BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16810.1
Length=1534
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319526 jgi|Araly1|319526|fgenesh1_pm.C_scaffold_3002542 765 0.0
Ahg931517 jgi|Araly1|931517|scaffold_303974.1 427 1e-118
> Ahg319526 jgi|Araly1|319526|fgenesh1_pm.C_scaffold_3002542
Length=1242
Score = 765 bits (414), Expect = 0.0
Identities = 959/1210 (79%), Gaps = 85/1210 (7%)
Strand=Plus/Plus
Query 214 AAAACTTGGGTCGCA--AGATATATCCCTCAGGATCTACTGATCGAGATTCTGACGAGAT 271
||||||||||||||| ||| || | |||| |||||| || ||||| |||||||||||||
Sbjct 70 AAAACTTGGGTCGCACCAGAGAT-T-CCTCTGGATCTCCTAATCGAAATTCTGACGAGAT 127
Query 272 TACCTCCGAAGTCAGTGATGAGATTCAAGTGTGTCTCAAAGTTTTGGTCATCTCTCTTGT 331
| ||| |||| || ||| ||||||||||||||||||||||||||||||||||||| || |
Sbjct 128 TGCCTGCGAAATCTGTGTTGAGATTCAAGTGTGTCTCAAAGTTTTGGTCATCTCTTTTCT 187
Query 332 CCTCCAGATATTTTTGCAACCGTTTTCTCATCGTCCCATCTCAACCTCAACCTAGTCTTT 391
|||| ||||||||| |||| ||||| || || ||| ||||||||| ||| || ||||||
Sbjct 188 CCTCGAGATATTTTCGCAATCGTTTCCTTATGGTCTCATCTCAACGTCATTCTCGTCTTT 247
Query 392 ACATGTGCCTAT-TGGATCGATACAACTACTCTAAGTCTCT-CATCTTATCATCTGCTCC 449
|||||| | | | |||| | |||||| | ||||||||| | | ||| |||||| |||||
Sbjct 248 ACATGT-CTTTTATGGACCTTTACAACGATTCTAAGTCTATGCTTCT-ATCATCCGCTCC 305
Query 450 AA---GCA-CG--TCTCCGTATTCCTTTGTATTCGACCAAGATCTAACCATCCGTAAGAT 503
|| ||| | | ||||| ||||| ||||||||||||||||| |||||||| |||||
Sbjct 306 AATAAGCAGCACATTTCCGTCCTCCTTAGTATTCGACCAAGATCTGACCATCCGCAAGAT 365
Query 504 GGGAGGTTTCTTCTTGCG-GATTCTTCGTGGCTTCAtttttttCACTAGAA-ATT-TAAA 560
|||||||||| | ||||| | |||| ||||||||||| | ||||| || | | |||
Sbjct 366 GGGAGGTTTCATATTGCGCG-TTCTCCGTGGCTTCATCTGCTTCAC-AGTTGACTCTAA- 422
Query 561 GGCGCGTATCTATAACCCCACCACTAGACAACTTGTGATCTTACCTACCATAAAAGAATC 620
| |||||||||||||||||||||| ||||||||||| ||||||||| ||||| |||||||
Sbjct 423 GCCGCGTATCTATAACCCCACCACCAGACAACTTGTAATCTTACCTGCCATAGAAGAATC 482
Query 621 TGATATCATAGC--A-G--GACCTCCTTA-TAAC-A--TCCTCTAT-TTTATCTGCCATG 670
|| ||||||||| | | || || | || | | ||| | ||||| |||| |
Sbjct 483 TGTTATCATAGCTGAAGAAGAAGAAGATAATTACGAAATATTCT-TCTTTATGGGCCACG 541
Query 671 ACCCTGTTAATGATCGG-TACAAACTACTCTGCACAGTTA-GTTA-TGCATCAGACAATG 727
||| |||||| |||| | | ||||||||| |||||| ||| | | || ||| || ||
Sbjct 542 ACCATGTTAAAGATCAGCT-CAAACTACTGTGCACAATTACGACAATG--TCAAACGAT- 597
Query 728 ATTTGCAAAATTTA-AAGTCAGAGCTTTGGAT-TTTCGTACTAGAAGCAGGGGGTTCGTG 785
|| |||||| || || |||||||||||| | ||| ||||||||||| || ||||||||
Sbjct 598 AT--GCAAAAGATAGAA-TCAGAGCTTTGGGTCTTT-GTACTAGAAGCTGGCGGTTCGTG 653
Query 786 GAAAAGGGTTGCAAATGAGTTTCCTCATCATGTTCCTTCAC-ATCTTGATTTGAATATGA 844
||||||||||||||| |||||||||| |||| ||||| | | || | || |||||||||
Sbjct 654 GAAAAGGGTTGCAAAGGAGTTTCCTCCTCATCTTCCTACTCCATAT-GAACTGAATATGA 712
Query 845 ATGGAGTTTTGTATTTTTTGGCTTGGACTGATCCACATACTTGTATGCTTGTTAGTTTCG 904
|||||||||| |||| ||||||||||||||| ||||||||| ||||||| |||||||
Sbjct 713 ATGGAGTTTTATATTACTTGGCTTGGACTGATATGCATACTTGTGTGCTTGTGAGTTTCG 772
Query 905 ACGTT-AGGTCTGAAGAGTTCAATACGATGCAAGTACCACGCAATGCTGGAGACAC-A-C 961
|| || ||||| ||||| ||||||| ||| |||||||| ||||| || || || | | |
Sbjct 773 AC-TTCAGGTCGGAAGAATTCAATATGATTCAAGTACCTCGCAAGGCCGGTGATAAGATC 831
Query 962 -TACCTAGACA-AGAGAAG-GG-TGTAGTTAA-TAGAGTATGGTG-AGAATGTAGCTGT- 1014
||||||||| | ||||| || || | | || |||| |||| || | || ||||||||
Sbjct 832 CTACCTAGACTTA-AGAAGTGGATG-ACTCAAATAGATTATGCTGGAAAA-GTAGCTGTG 888
Query 1015 TCTTGATTTCACCGATCTCCGAGTGAATGGTAAGATGGATTTGTGGGTTGTGGAAGA-TG 1073
| |||| || || |||||||||||| |||| | ||||| | ||||| ||| |||| ||
Sbjct 889 T-TTGACTTGACTTATCTCCGAGTGAGGGGTACGGTGGATCTATGGGTAGTGCAAGACTG 947
Query 1074 CCAAGAAGAAGGAATGGTCGAGGAAGACTTTTGTTTTGCAGCCCTCTCAGATGCATTTAG 1133
| |||||||||||||| |||||||||| | ||||||||||| |||||| ||||| |
Sbjct 948 G-AGGAAGAAGGAATGGTTGAGGAAGACTCTGGTTTTGCAGCCTTCTCAGCTGCATCCA- 1005
Query 1134 ACGTCACTGATAAT-ATA--TGGGCAGCAAAAGGTACATCTATAAAAGGCAAGGTCATCT 1190
| || ||| ||| ||| | ||||||||| || |||| ||| |||||||| ||||
Sbjct 1006 A--TCTTTGACAATCATAGATTAATAGCAAAAGGAAC-TCTA-AAA-GGCAAGGTTATCT 1060
Query 1191 TGGTACCAAAGA-AGTTGTTTTCTTCTCCCTTTTACTTTCTCTACTATGACCTGCAAATC 1249
||||||| || | ||| ||||| | || ||||||||||| | ||| || |||||| ||
Sbjct 1061 TGGTACCGC-GATATTTGGTTTCT-C-CC-TTTTACTTTCTTTGCTACGATCTGCAACTC 1116
Query 1250 AATGATTTGAAAAAGGTTGAGGTCAAAGGAATACCAGATCGTTGGTTTAGTAACCCTGTA 1309
|||||||||||||||||||| ||||||||||||| ||||| ||||||||||| | | |
Sbjct 1117 AATGATTTGAAAAAGGTTGAAATCAAAGGAATACCTGATCGCTGGTTTAGTAAGCATA-A 1175
Query 1310 -A-GGACCAGATATATG-GACATGGAGCTTATGGATCCAAGTGAGAGCATC-ATGTATCT 1365
| |||| | |||| || ||||| ||| ||||| |||| |||||||||||| | ||| ||
Sbjct 1176 CACGGAC-ATATAT-TGTGACATTGAGTTTATGAATCCGAGTGAGAGCATCGA-GTACCT 1232
Query 1366 GGAAACTTGA 1375
|||||||||
Sbjct 1233 TGAAACTTGA 1242
> Ahg931517 jgi|Araly1|931517|scaffold_303974.1
Length=480
Score = 427 bits (231), Expect = 1e-118
Identities = 299/330 (91%), Gaps = 12/330 (4%)
Strand=Plus/Plus
Query 854 TGTA-TTTTTTGGCTTGGACTGATCCACATACTTGTATGCTTGTTAGTTTCGACGTTAGG 912
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 154 TGTATTTTTTTGGCTTGGACTGATTCACATACTTGTATGCTTGTTAGTTTCGACGTCAGG 213
Query 913 TCTGAAGAGTTC-A-AT-A--CGA-TGCAAGTACCACGCAATGCTGGAGACACACTACCT 966
|| ||||||||| | || | | | |||||||||||||||||||||||||||||||||||
Sbjct 214 TCGGAAGAGTTCAATATGATGCAACTGCAAGTACCACGCAATGCTGGAGACACACTACCT 273
Query 967 AGACAAGAGAAGGGTGTAGTT--AATAGAGTATGGTGAGAATGTAGCTGTTCTTGATTTC 1024
||| | ||||| || || ||| ||||||||||||||| |||||||||||| ||||||||
Sbjct 274 AGATATGAGAAAGGCGTGGTTCCAATAGAGTATGGTGAAAATGTAGCTGTTTTTGATTTC 333
Query 1025 ACCGATCTCCGAGTGAATGGTAAGATGGATTTGTGGGTTGTGGAAGATGCCAAGAAGAAG 1084
||| |||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 334 ACCTATCTCCTAGTGAATGGTAAGGTGGATTTGTGGGTTGTGGAAGATGCTAAGAAGAAG 393
Query 1085 GAATGGTCGAGGAAGACTTTTGTTTTGCAGCCCTCTCAGATGCATTTAGACGTCACTGAT 1144
|||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||
Sbjct 394 GAATGGTCGAGGAAGACTTTGGTTTTGCAGCCCTCTCACATGCATTTAG---TCACTGAT 450
Query 1145 AATATATGGGCAGCAAAAGGTACATCTATA 1174
||||||| || |||||||||||||||||||
Sbjct 451 AATATATAGGTAGCAAAAGGTACATCTATA 480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57440089460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5