BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16850.1
Length=1160
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480563 jgi|Araly1|480563|fgenesh2_kg.3__3264__AT2G16850.1 1563 0.0
Ahg491143 jgi|Araly1|491143|fgenesh2_kg.7__576__AT4G35100.1 784 0.0
Ahg470115 jgi|Araly1|470115|fgenesh2_kg.1__69__AT1G01620.1 324 1e-87
> Ahg480563 jgi|Araly1|480563|fgenesh2_kg.3__3264__AT2G16850.1
Length=1043
Score = 1563 bits (846), Expect = 0.0
Identities = 993/1061 (94%), Gaps = 21/1061 (2%)
Strand=Plus/Plus
Query 1 TCCATAACTAGAGAGAGAAACTAATCTTTTTAGTGAGAGAGAAATCTTAGAGCTGAGCTA 60
|||||||| |||||||||||| |||||||| |||||| ||| | || | || ||
Sbjct 1 TCCATAACAAGAGAGAGAAACCAATCTTTTCAGTGAGTGAG----C-TA-A---GA--TA 49
Query 61 AGAAAAATGTCAAAAGAAGTGAGTGAAGAAGGAAGACATGGCAAAGACTACGTGGATCCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 50 AGAAAAATGTCAAAAGAAGTGAGTGAAGAAGGAAGACATGGCAAAGACTACGTTGATCCA 109
Query 121 CCTCCAGCTCCACTTCTAGACATGGCTGAGCTTAAGCTCTGGTCTTTTTACAGAGCTATC 180
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 110 CCTCCAGCTCCACTTCTAGACATGGCTGAGATTAAGCTCTGGTCTTTCTACAGAGCTATC 169
Query 181 ATCGCAGAGTTCATCGCCACTCTCCTCTTCCTCTATGTAACCGTAGCTACAGTCATTGGC 240
|| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 170 ATTGCAGAGTTCATCGCCACTCTCCTCTTCCTCTACGTAACCGTTGCTACAGTCATTGGC 229
Query 241 CACAAGAACCAAACCGGTCCTTGTGGCGGTGTTGGTTTACTCGGCATTGCGTGGGCCTTT 300
||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 230 CACAAGAACCAAATCGGTCCTTGTGATGGTGTTGGTTTACTCGGCATTGCATGGGCCTTT 289
Query 301 GGTGGCATGATCTTTGTCCTCGTCTATTGCACCGCCGGTATCTCCGGAGGTCACATTAAC 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 290 GGTGGCATGATCTTTGTCCTCGTTTATTGCACCGCCGGTATCTCCGGAGGTCATATTAAT 349
Query 361 CCAGCTGTGACATTTGGTCTGTTCTTGGCTCGTAAAGTGTCGCTCCCTAGAGCAGTTGCT 420
||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 350 CCAGCAGTGACATTTGGTCTGTTCTTGGCTCGTAAAGTGTCACTCCTTAGAGCAGTTGCA 409
Query 421 TACATGGTGGCTCAGTGTCTTGGAGCCATTTGTGGAGTTGGACTCGTT-AAGGCCTTTAT 479
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 410 TACATGGTGGCTCAGTGTCTTGGAGCCATTTGTGGAGTTGGACTCGTTGAA-GCCTTTAT 468
Query 480 GATGACTCCATATAAACGTCTCGGAGGCGGAGCTAACACCGTAGCTGATGGTTATAGCAC 539
|||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 469 GATGACTCCATACAAACGTCTAGGTGGCGGAGCTAACACCGTAGCTGATGGTTATAGCAC 528
Query 540 CGGAACTGCTCTTGGTGCTGAGATTATTGGCACATTTGTCTTGGTTTACACTGTCTTCTC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 CGGAACTGCTCTTGGTGCTGAGATTATTGGCACATTTGTCTTGGTTTACACTGTCTTCTC 588
Query 600 CGCCACTGACCCCAAAAGAAGTGCCCGTGACTCTCACGTCCCGGTTTTGGCTCCGTTACC 659
||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 589 TGCCACTGACCCTAAAAGAAGCGCGCGTGACTCTCACGTCCCGGTTTTGGCTCCGTTACC 648
Query 660 TATAGGGTTTGCTGTGTTCATGGTGCATTTGGCTACTATCCCCATAACTGGAACTGGGAT 719
||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 649 TATTGGGTTCGCAGTGTTCATGGTGCATTTGGCTACTATCCCCATCACTGGAACTGGAAT 708
Query 720 TAATCCAGCCAGAAGCTTTGGTGCTGCTGTTATCTACAACAATGAGAAAGCTTGGGACGA 779
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 709 TAATCCAGCTAGAAGCTTTGGTGCTGCTGTTATCTACAACAATGAAAAAGCTTGGGAGGA 768
Query 780 CCATTGGATCTTTTGGGTTGGACCATTCGTGGGAGCATTAGCAGCAGCAGCATACCATCA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 CCATTGGATCTTTTGGGTTGGACCATTCGTGGGAGCATTAGCAGCAGCAGCATACCATCA 828
Query 840 ATATATCTTGAGAGCTGCAGCAATCAAAGCTTTGGCTTCATTCCGCAGCAACCCAACCAA 899
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 829 ATACATCTTGAGAGCTGCAGCAATCAAAGCCTTGGCTTCATTCCGCAGCAACCCAACCAA 888
Query 900 TTGATGATTCATGAGACTTCTTAGAACAATTTGAGATCtttttttttGTGTGCTTAATGA 959
|||||||| |||||| ||| ||| | ||||||||| ||| |||| | |||| |||||||
Sbjct 889 TTGATGATGCATGAG-CTTATTA-A-CAATTTGAGCTCTGTTTTGT-GTGT--TTAATGA 942
Query 960 GAGATATTTGTGTGTTTTAATTTGATGTAATCGGATTTATTCATTTTCA-TAGTTTAATT 1018
|||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||| ||
Sbjct 943 GAGATATTTGTGTGTTTTAATTTGGTGTTATCGGATTTATTCATTTTCAATAGTTTAGTT 1002
Query 1019 TGGTTTAATTCATCTTTGT-CCGTTGCTTTCTTTCATGTAG 1058
|||||| |||||||||||| |||||||||||||||||||||
Sbjct 1003 TGGTTTGATTCATCTTTGTACCGTTGCTTTCTTTCATGTAG 1043
> Ahg491143 jgi|Araly1|491143|fgenesh2_kg.7__576__AT4G35100.1
Length=1045
Score = 784 bits (424), Expect = 0.0
Identities = 720/861 (84%), Gaps = 28/861 (3%)
Strand=Plus/Plus
Query 63 AAAAATGTCAAAAGAAGTGAGTGAAGAAGG---AA--GA-CATGGCAAAGACTACGTGGA 116
||| ||||| ||||||||||| |||||||| || | ||||| ||||||||||||||
Sbjct 71 AAAGATGTCGAAAGAAGTGAGCGAAGAAGGAAAAACCCACCATGGGAAAGACTACGTGGA 130
Query 117 TCCACCTCCAGCTCCACTTCTAGACATGGCTGAGCT-TAAGCTCTGGTCTTTTTACAGAG 175
||| || |||||||| || | ||||||| |||||| || | ||||||||| |||||||
Sbjct 131 TCCTCCACCAGCTCCGTTTTTCGACATGGGTGAGCTCAAATC-CTGGTCTTTCTACAGAG 189
Query 176 CTATCATCGCAGAGTTCATCGCCACTCTCCTCTTCCTCTATGTAACCGTAGCTACAGTCA 235
|| ||||||| ||||||||||| || |||||||||||||| || || || ||||| ||||
Sbjct 190 CTCTCATCGCTGAGTTCATCGCTACACTCCTCTTCCTCTACGTCACTGTCGCTACTGTCA 249
Query 236 TTGGCCACAAGAACCAAACCGGTCCTTGTGGCGGTGTTGGTTTACTCGGCATTGCGTGGG 295
| ||||||||||| ||||||||| |||||| ||| ||||||||||||||||| || ||||
Sbjct 250 TCGGCCACAAGAAGCAAACCGGTGCTTGTGACGGCGTTGGTTTACTCGGCATCGCTTGGG 309
Query 296 CCTTT-GGTGGCATGATCTTTGTCCTCGTCTATTGCACCGCCGGTATCTCCGGAGGTCAC 354
|||| ||||| |||||||| |||||||| || ||||||||||||||||| || ||||||
Sbjct 310 -CTTTCGGTGGTATGATCTTCGTCCTCGTTTACTGCACCGCCGGTATCTCTGGTGGTCAC 368
Query 355 ATTAACCCAGCTGTGACATTT-GGTCTGTTCTTGGCTCGTAAAGTGTCGC-TCCCT-AGA 411
||||||||||||||||| ||| ||||| ||||| || ||| ||| ||| | | | |||
Sbjct 369 ATTAACCCAGCTGTGAC-TTTCGGTCTATTCTTAGCCCGT-AAG-GTCTCTTTGGTGAGA 425
Query 412 GCAGTTGCTTACATGGTGGCTCAGTGTCTTGGAGCCATTTGTGGAGTTGGACTCGTTAAG 471
|| ||| ||||||| | |||||||||||||||||||||||||| || || |||| ||
Sbjct 426 GCTCTTGGTTACATGATAGCTCAGTGTCTTGGAGCCATTTGTGGTGTGGGTTTCGTGAAA 485
Query 472 GCCTTT-ATGATGACTCCATATAA-ACGTCTCGGAGGCGGAGCTAACACCGTAGCTGATG 529
| |||| |||| ||||| || || || ||| || || |||||||||||||||||||| |
Sbjct 486 G-CTTTCATGAAAACTCCTTACAACAC-TCTTGGTGGAGGAGCTAACACCGTAGCTGACG 543
Query 530 GTTATAGCACCGGAACTGCTCTTGGTGCTGAGATTATTGGCACATTT-GT-CTTGGTTTA 587
| || |||| ||||||||||| || ||||||||||| || || ||| || ||| |||||
Sbjct 544 GCTACAGCAAAGGAACTGCTCTCGGAGCTGAGATTATCGGAAC-TTTCGTCCTT-GTTTA 601
Query 588 CACTGTCTTCTCCGCCACTGACCCCAAAAGAAGTGCCCGTGACTCTCACGTCCCGGTTTT 647
||| || ||||| || |||||||| || ||||| || |||||||||||| |||| |||||
Sbjct 602 CACCGTTTTCTCTGCAACTGACCCTAAGAGAAGCGCTCGTGACTCTCACATCCCCGTTTT 661
Query 648 GGCTCC-GTTACCTATAGGGTTTGCTGTGTTCATGGTGCATTTGGCTACTATCCCCATAA 706
|||||| || || || || |||||||||||||||||||||||||||||||||||||| |
Sbjct 662 GGCTCCACTT-CCAATTGGATTTGCTGTGTTCATGGTGCATTTGGCTACTATCCCCATTA 720
Query 707 CTGGAACTGGGATTAATCCAGCCAGAAGCTTTGGTGCTGCTGTTATCTACAACAATGAGA 766
| |||||||| || || ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 721 CCGGAACTGGTATCAACCCAGCAAGAAGCTTTGGTGCTGCTGTTATCTACAACAACGAGA 780
Query 767 AAGCTTGGGACGACCATTGGATCTTTTGGGTTGGACCATTCGTGGGAGCATTAGCAGCAG 826
| || ||||| ||||| ||||||||||||||||| || ||| |||||||| |||| ||||
Sbjct 781 AGGCGTGGGATGACCAATGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAG 840
Query 827 CAGCATACCATCAATATATCTTGAGAGCTGCAGCAATCAAAGCTTTGG-CTTCATTCCGC 885
| || ||||||||||| || ||||||||| ||||||| || || |||| || | |||||
Sbjct 841 CCGCTTACCATCAATACATATTGAGAGCTTCAGCAATTAAGGCCTTGGGCT-CTTTCCGA 899
Query 886 AGCAACCCAACCAATTGATGA 906
|||||| ||||||||| ||||
Sbjct 900 AGCAACGCAACCAATTAATGA 920
> Ahg470115 jgi|Araly1|470115|fgenesh2_kg.1__69__AT1G01620.1
Length=1065
Score = 324 bits (175), Expect = 1e-87
Identities = 551/731 (75%), Gaps = 32/731 (4%)
Strand=Plus/Plus
Query 102 CAAAGACTACGTGGATCCACCTCCAGCTCCAC--TTCTAGACATGGCTGAGCTTAAGCTC 159
|||||||||| ||| ||||| |||||||||| ||| || || ||| |||| | || ||
Sbjct 171 CAAAGACTACAAGGAGCCACCACCAGCTCCACTGTTCGAGCCA-GGC-GAGC-TGAGTTC 227
Query 160 -TGGTCTTTTTACAGAGCTATCATCGCAGAGTTCATCGCCAC-TCTCCTCTTCCTCTATG 217
||||| || |||||||| ||||| |||||||| ||||| | |||| || || ||
Sbjct 228 ATGGTCCTTCTACAGAGCCGGAATCGCCGAGTTCATAGCCACAT-TCCTGTTTCTATACA 286
Query 218 TAACCGTAGCT-ACAGTCATTGGCCACAAGA-ACCAAACCGGTCCT-TGTGGCGGTGTTG 274
| || ||| | ||||| || || |||| | | ||| | | |||| | |||||
Sbjct 287 TCACAGTA-TTGACAGTGATGGGAGTGAAGAGAGC--ACCAAACATGTGTGCCTCTGTTG 343
Query 275 GTTTACTCGGCATTGCGTGGGCCTTTGGTGGCATGATCTTTGTCCTCGTCTATTGCACCG 334
| | | |||||||| ||||| ||||| ||||||||||||| ||| ||||| || || |
Sbjct 344 GAATCCAAGGCATTGCTTGGGCTTTTGGAGGCATGATCTTTGCCCTTGTCTACTGTACTG 403
Query 335 CCGGTATCTCCGGAGGTCACATTAACCCAGCTGTGACATTTGGTCTGTTCTTGGCTCGTA 394
| || ||||| || || ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 404 CTGGAATCTCTGGTGGACACATAAACCCAGCGGTGACATTTGGTCTGTTCTTGGCTCGTA 463
Query 395 AAGTGTCGCTCCCTAGAGCAGT-TGCTTACATGGTGGCT-CAGTGTCTTGGAGCCATTTG 452
|| |||| | | ||||| || | || |||| ||| | || ||||| |||||||| ||
Sbjct 464 AACTGTCATTGACGAGAGCTGTCTTCT-ACATCGTGA-TGCAATGTCTCGGAGCCATCTG 521
Query 453 TGGAGTTGGACTCGTTAA-GGCCTTT-ATGATGACTCCATAT-AAACGTCTCGGAGGCGG 509
|| | ||| | || || ||| || | | | ||| || |||| |||||| || ||
Sbjct 522 CGGCGCCGGAGTTGTCAAAGGC-TTCCA-GCCAAATCCTTACCAAAC-TCTCGGCGGAGG 578
Query 510 AGCTAACACCGTAGCTGATGGTTATAGC-ACCGGAACTGCTCTTGGT-GCTGAGATTATT 567
||| |||||||| ||| | || || | | | || ||| | |||| |||||||| ||
Sbjct 579 AGCCAACACCGTCGCTCACGGCTACA-CTAAGGGCTCTGGT-TTGGGCGCTGAGATCATC 636
Query 568 GGCACATTTGTC-TTGGTTTACACTGTCTTCTCCGCCACTGACCCCAAAAGAAGTGCCCG 626
|| || || ||| ||| | ||||| |||||||||||||||||| |||| ||||| || ||
Sbjct 637 GGAACCTTCGTCCTTG-TCTACACGGTCTTCTCCGCCACTGACGCCAAGAGAAGCGCTCG 695
Query 627 TGACTCTCACGTCCCGGTTTTGGCTCCGTTACCTATAGGGTTTGCTGTGTTCATGGTGCA 686
|||||| ||||| ||| |||||||||| | || || || || ||||||||| |||| ||
Sbjct 696 TGACTCCCACGTGCCGATTTTGGCTCCACTCCCAATCGGATTCGCTGTGTTCTTGGTTCA 755
Query 687 TTTGGCTACTATCCCCATAACTGGAACTGGGATTAATCCAGCCAGAAG-CTTTGGTGCTG 745
||||| || || || ||||| ||||| || || || ||||| || || ||| || ||||
Sbjct 756 CTTGGCGACGATTCCGATAACCGGAACCGGAATCAACCCAGCAAGGAGTCTT-GGAGCTG 814
Query 746 CTGTTATCTACAACAATGAGAAAGCTTGGGACGACCATTGGATCTTTTGGGTTGGACCAT 805
| | ||||||||||| || | |||||||||||||| ||||| || ||||| |||||||
Sbjct 815 CAATCATCTACAACAAGGACCACGCTTGGGACGACCACTGGATATTCTGGGTAGGACCAT 874
Query 806 TCGTGGGAGCA 816
|| | ||||||
Sbjct 875 TCATTGGAGCA 885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43269510795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5