BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16860.1
Length=1255
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480564 jgi|Araly1|480564|fgenesh2_kg.3__3265__AT2G16860.1 1823 0.0
> Ahg480564 jgi|Araly1|480564|fgenesh2_kg.3__3265__AT2G16860.1
Length=1137
Score = 1823 bits (987), Expect = 0.0
Identities = 1092/1141 (96%), Gaps = 14/1141 (1%)
Strand=Plus/Plus
Query 40 aaaaaaaaaaTCATTATCGTCCGCGAGATATCTGGTGTTCTTCTCGTACTTGCGGATTCC 99
|||||||||| |||||||||||||| |||||||||||||||||| || |||| ||||||
Sbjct 1 AAAAAAAAAA-AATTATCGTCCGCGAAATATCTGGTGTTCTTCTCATAGTTGCAGATTCC 59
Query 100 TCCGAATTGTTTCTTCACA-----GTTTCTTAACGCTTGGAAGTATGGTTAGTGAGAGAA 154
||||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||
Sbjct 60 TCCGAATCGTTTCTCCACAGGTTGGTTTCTTGACGCTTGGAAGTATGGTTAGTGAGAGAA 119
Query 155 GAGTGCATCCGGATTGTATAAACGCTTCAAATCCTTATCACGAGTGTGTCGAGTATTGCT 214
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 120 GAGTGCATCCGGACTGTATAAACGCTTCAAATCCTTATCACGAGTGTGTTGAGTATTGCT 179
Query 215 TTAAGAAAATCGCTGAAGCAAAGGCCAGATTCGAGAAGCAGAACACTGGATTAGCTAAAG 274
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 180 TTAAGAAAATCGCTGAAGCAAAGGCCAGATTCGAGAAGCAGAATGCTGGATTAGCTAAAG 239
Query 275 TTCACGAGCAGACGAGGGAGCCGCTCGATGATAAAAGAATAGAGGAAGATAGTTCAGAAG 334
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTCACGAGCAGACGAGAGAGCCGCTCGATGATAAAAGAATAGAGGAAGATAGTTCAGAAG 299
Query 335 AAGAAGAGGAGGAAGAGGATAACCAAGAACCTCAAGTAGATGTAACTCAACTTACAGGGA 394
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 300 AAGAAGAGGAGGAAGAGGATAACCAAGAACCTCAAGTAGACGTGACTCAACTTACAGGGA 359
Query 395 GACAAAAGAAGTTGTTTGAGTTGAGACTTAAGATGAATGAAGCAAGAAAATCCAATCAGA 454
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GGCAGAAGAAGTTGTTTGAGTTGAGACTTAAGATGAATGAAGCAAGAAAATCCAATCAGA 419
Query 455 CGGATGTCGGGAGTGAAAAGAAGAAAATGGAAGCACCAACAGAGACAAAAGGAATCTCAA 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGGATGTCGGGAGTGAAAAGAAGAAAATGGAAGCACCAACAGAGACAAAAGGAATCTCAA 479
Query 515 AACAGAAATGGTTGGAGGGGAGGAAGAAAAAGATTGGGAAACTTCTTGATGCTAATGGTT 574
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 480 AACAGAAATGGTTGGAGGGGAGGAAGAAAAAGATTGGGAAACTTCTCGATGCTAATGGTT 539
Query 575 TAGATATGACACAGGCTTATATGCTCGATACTCAAGAAGCAGCTGAATCAAAATACAAAA 634
||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 540 TAGATATGACAAAGGCTTATATGCTCGATACTCAAGAAGCAGCAGAAACAAAATACAAAA 599
Query 635 AATGGGAAAAGGAACCTACGCCTGCGGGTTGGGATGTCTTTAACCAGAAGACGTTATACA 694
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 600 AGTGGGAAAAGGAACCTACGCCTGCTGGTTGGGATGTCTTTAACCAGAAGACGTTATACA 659
Query 695 ACGCATACAAGAAACGGACAAAGAACATTCAGGTTGATCTGGAGGAGTATAACAGAATGA 754
||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 660 ACGCATATAAGAAACGGACAAAGAACATTCAGGTTGATCTAGAGGACTATAACAGAATGA 719
Query 755 GAGCAGCTGATCCAGAGTTTTACCGTGAGGCCTCAAGCTTGCAATATGGAAAGGCTCCAA 814
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 720 GAGCAGCTGATCCAGAGTTTTACCGTGAGGCCTCAAGCTTGCAATATGGGAAGGCTCCAA 779
Query 815 AAACTTCGCAAGATAAGATAGATAAGATGGCAAAAGAGCTCTTAGACAGAGAGCAAAAGC 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AAACTTCGCAAGATAAGATAGATAAGATGGCAAAAGAGCTCTTAGACAGAGAGCAAAAGC 839
Query 875 GACAAGAGTTTAGCAGGAGGAGGAAGTTCCGGGAAGAGAAGGATATCGATTCCATCAACG 934
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 840 GACAAGAGTTTAGTAGGAGGAGAAAGTTCCGGGAAGAGAAGGATATCGATTCCATCAACG 899
Query 935 ACAGAAACGAGCATTTCAACAAGAAAATCGAGCGTGCGTTTGGGAAATACACGCTGGAGA 994
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 900 ACAGAAACGAGCATTTCAACAAGAAAATCGAGCGTGCGTTTGGGAAATACACACTGGAGA 959
Query 995 TCAAAAACAACTTGGAACGAGGAACTGCATTACCCGACTAAGCTACTTGAGCTCACATGT 1054
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TCAAAAACAACTTGGAGCGAGGAACTGCATTACCCGACTAAGCTACTTGAGCTCACATGT 1019
Query 1055 TGGAAACAAGGGAATGGATTTCTGGTTCG-AAAGTAAACT-AT--GCTGTTGTCTGATTA 1110
|| |||||||||||||||||||||||||| |||||||||| || ||||||||||| |||
Sbjct 1020 TGAAAACAAGGGAATGGATTTCTGGTTCGGAAAGTAAACTTATATGCTGTTGTCTGCTTA 1079
Query 1111 ATTGTCCTTAAATT-ATCCTTCTTGAGAGAACTAAATTGTAGAATGAACGTTTCTTTAGC 1169
|||||||||||||| |||||| ||||||||||| ||||||||||||| ||||||||||
Sbjct 1080 ATTGTCCTTAAATTTATCCTT---GAGAGAACTAAGTTGTAGAATGAACTTTTCTTTAGC 1136
Query 1170 C 1170
|
Sbjct 1137 C 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46891187910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5