BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16900.1
Length=1764
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480570 jgi|Araly1|480570|fgenesh2_kg.3__3271__AT2G16900.1 2194 0.0
> Ahg480570 jgi|Araly1|480570|fgenesh2_kg.3__3271__AT2G16900.1
Length=1543
Score = 2194 bits (1188), Expect = 0.0
Identities = 1426/1537 (93%), Gaps = 31/1537 (2%)
Strand=Plus/Plus
Query 8 AATGAGTAGGTGTGAACAAATGAGAGAGGAGGAGGATCAGCTTTGCTTTTGTTCCCTTTT 67
||| ||||||||||||| | | ||||| ||||||||||||| |||||||||||||||
Sbjct 1 AATTAGTAGGTGTGAAC---T-A-TGAGGA-GAGGATCAGCTTTTCTTTTGTTCCCTTTT 54
Query 68 CTCGTCTCTGCAGCTTCCTTGTTGTCAACTTCTGGAAGCCTTTGATTGATTGCAACTTCT 127
|||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 55 CTCG--TCT-CAGCTTCCTTGTTGTCAACTTCTCGAAGCCTTTGATTGATTACAACTTCT 111
Query 128 ATCTCCATTCTCCTGCTCATTTAATATTCCAA-TTAATAGTCAATCTCGTCGAATCTTCA 186
| || ||||||| ||| |||||| | || || |||||||||| ||||||||||||||||
Sbjct 112 ACCTTCATTCTCATGCCCATTTATTGTT-TAATTTAATAGTCAGTCTCGTCGAATCTTCA 170
Query 187 ATTTTTTAAAGCTTTTGGTCAAATCAAATGTAATGCAAAGACAGACCAAAACCTCCTCTT 246
|||||| |||||||||||||||||||||||| |||||||| |||| ||||||||| ||||
Sbjct 171 ATTTTTAAAAGCTTTTGGTCAAATCAAATGT-ATGCAAAGTCAGATCAAAACCTCTTCTT 229
Query 247 CTTCTTCTTATATACTTCCTCTCCTACAAAATCTCTATTTACTTCCATCTTCTCTGCTAA 306
||||||||||||||||| | || ||||||||||||| ||||||||||||||||||||| |
Sbjct 230 CTTCTTCTTATATACTT-C-CT-CTACAAAATCTCTTTTTACTTCCATCTTCTCTGCTCA 286
Query 307 AGACCTTTCTTCACCATTCCCAATTTT-CC-GT---TCTTGTTTCTGATTGAATCTAGAT 361
|||||||||||||||||| || ||||| || || ||||| ||||||||||||||||||
Sbjct 287 AGACCTTTCTTCACCATTACC-ATTTTCCCGGTAACTCTTGCTTCTGATTGAATCTAGAT 345
Query 362 ATTGA-TTAAGCTATGGATGTCAATCGGAAAGCTCACCCGGATTGTCGATATTCTTCAAA 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 346 ATTGATTTAAGCTATGGATGTCAATCGGAAAGCTCACCCGGATTGTCGATATTCTTCGAA 405
Query 421 TCCTTTCCATGAATGTGCTTCAGATTGTTTAGAGAAGATCTCTCAAGGCCGTGGAAATAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 TCCTTTCCATGAATGTGCTTCAGATTGTTTAGAGAAGATCTCTCAAGGCCGTGGAAATAA 465
Query 481 GAATTCAAAGAAGCAAGGTTCAAAGATTCTTAGCCTTCCGGGGAGTTTTGGTAAGAAAAA 540
| ||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||
Sbjct 466 GCATTCAAAGAAGCAAGGTGCAAAGATTCTTAGCCTCCCTGGGAGTTTTGGTAAGAAAAA 525
Query 541 GACGGAGTCACAGCCACCGTCACCCCTGAGTACAAGGAACTATCAGAATGGTGCTGCTAA 600
||| |||||||||||||| ||||| |||| |||||||||||||||||| |||||||||||
Sbjct 526 GACAGAGTCACAGCCACCATCACCTCTGAATACAAGGAACTATCAGAACGGTGCTGCTAA 585
Query 601 TACCCCAAAGGTTCGTCAATCAAGACCTTCACCAGTAGCTATGAAGAAGACGCCAGTTCC 660
| |||||||| ||| ||||||||||||||||||||||||| | ||||||||| | |||||
Sbjct 586 TTCCCCAAAGATTCATCAATCAAGACCTTCACCAGTAGCTGTCAAGAAGACGACGGTTCC 645
Query 661 AGAAGCGAACAAATCTTTACACTCTTTATCGTCTGATGGAATCTCTATTGACCTCAACGG 720
||||||||||||||| || | |||| |||| |||||| |||||||||||||||||||||
Sbjct 646 AGAAGCGAACAAATCGTTCCCCTCTCTATCACCTGATGAAATCTCTATTGACCTCAACGG 705
Query 721 TCAGAATGATTCTTTTAACCATAA-GCAGGAGAAGCCATCGCGAACTGTTCCTCTATCCC 779
|||| |||||||||| |||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 706 TCAGCATGATTCTTTCAACCATAAGGCA-GAGAAGCCATCGCGAACTGTTCCTCTATCCC 764
Query 780 CAAACAGCATGGCTGATCGTGGGAAACCCT-TATCACCACGACCTCAAGGGCATGAACAC 838
||||||| ||||||||| |||| ||| ||| ||||||||||||||| ||||||||| |||
Sbjct 765 CAAACAGAATGGCTGATGGTGGCAAA-CCTGTATCACCACGACCTCGAGGGCATGACCAC 823
Query 839 AGTGGCAAGAATGACACAGCCAGTGAGATTAGTTTGTTTAATGTTGTAAGCCCTCCAAGA 898
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 824 AGTGGCAAGAATGAAACAGCCAGTGAGATTAGTGTGTTTAATGTTGTAAGCCCTCCAAGA 883
Query 899 TCATGCGCCAatgatgatgatgatgatgatgatgaAAACAATGGTTACGAGGAGGGAGTG 958
||||| ||| | |||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 884 TCATGTGCC-A--ATGATGATGATGATGATGATGAAAACAATGATTATGAGGAGGGAGTG 940
Query 959 GAGTTAGACCTTATATCAGTAATGTCAGACTCATGTGTTTCGGTTGGAAAATACCGTGTG 1018
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 941 GAGTTAGACCTTATATCAGTAATGTCGGACTCGTGTGTTTCTGTTGGAAAATACCGTGTG 1000
Query 1019 AACTCAAGTGTTTCCACAATCCTACAGTCAATCATTGATAAACACGGAGACATAGCAGCA 1078
|||||| |||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 1001 AACTCAGGTGTTTCCACAATCCTACAGTCAATCATCGACAAACACGGAGACATAGCTGCA 1060
Query 1079 AACTGCAAGCTAGAATCAGCATCAATGCGATCCCGATACCTAGAGTGTCTATGCTCATTG 1138
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1061 AACTGCAAGCTAGAATCAGCATCAATGCGATCCCGATACCTAGAGTGCCTATGCTCATTG 1120
Query 1139 ATGCAAGAACTTGGATCAACCCCGGT-GGGTCAGTTAACCGAACTAAAAGTAAAAGAGAT 1197
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1121 ATGCAAGAACTTGGATCAACCCCGGTCGGG-CAGTTAACCGAACTAAAAGTAAAAGAGAT 1179
Query 1198 GGTCGCGGTTCTCAAGGACTTGGAGTCTGTGAACATCGACGTTGGCTGGATGCGTTCGGT 1257
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1180 GGTCGCAGTTCTCAAGGACTTGGAGTCTGTGAACATCGATGTTGGCTGGATGCGTTCAGT 1239
Query 1258 TCTTGAGGAGTTTGCTCAGTATCAAGAGAACACAGACTCAGAGAAGGAGAGACAAGAAGG 1317
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 1240 TCTTGAGGAGTTTGCTCAGTATCAAGAGAACACAGACTCGGAGAAAGAGAGGCAAGAAGG 1299
Query 1318 ATTGGTGAGGTCTAAGAAACAAGAAATGGAGATTCAAGAAGCTGATTTGGCTCGGATTGA 1377
|||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1300 ATTGGTAAGGTCTAAGAAACAGGAAATGGAGGTTCAAGAAGCTGATTTGGCTCGGATTGA 1359
Query 1378 GAAGGAAGTAGCGGAGGCGAGGTTGAGGGTCGAGGAGATGAAAGCAGAGCTCGCTGAGCT 1437
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1360 GAAGGAAGTAGCGGAAGCGAGGTTGAGGGTCGAGGAGATGAAAGCAGAGCTGGCTGAGCT 1419
Query 1438 CGAGACAGAGCGGTTGCGGATGGAGGAGATGGGATTTAAGGTCGAGAAATATAAAGGGAA 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1420 CGAGACAGAGCGGTTGCGGATGGAGGAGATGGGATTTAAGGTCGAGAAATATAAAGGGAA 1479
Query 1498 GACGTTTCTTGATGAACTTCTGTGATGGTTGTTAATA 1534
| | ||||||||||||||||| ||||| |||||||||
Sbjct 1480 GTCATTTCTTGATGAACTTCTATGATGTTTGTTAATA 1516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66200845810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5