BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16940.2
Length=2278
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480573 jgi|Araly1|480573|fgenesh2_kg.3__3274__AT2G16940.1 2202 0.0
> Ahg480573 jgi|Araly1|480573|fgenesh2_kg.3__3274__AT2G16940.1
Length=2058
Score = 2202 bits (1192), Expect = 0.0
Identities = 1355/1430 (95%), Gaps = 26/1430 (2%)
Strand=Plus/Plus
Query 813 ACGCCATAAAGATAAGAAGGAGGATAAGGTAGAGCCTGAGGCTGATCCTGAAAGAGATCA 872
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 645 ACGCCATAAAGATAAGAAGGATGATAAGGTAGAGCCTGAGGCTGATCCTGAAAGAGATCA 704
Query 873 GAGAACAGTTTTTGCATATCAGATTGCTTTGAGGGCAACTGAAAGGGATGTATATGAGTT 932
||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 705 GAGAACAGTTTTTGCCTATCAGATTGCTTTGAGGGCAACAGAAAGGGATGTTTATGAGTT 764
Query 933 CTTTTCCAGAGCTGGAAAGGTGCGAGATGTACGGATAATAATGGATCGAATTTCCAGGCG 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 CTTTTCCAGAGCTGGAAAGGTGCGAGATGTACGGATAATAATGGATCGAATTTCCAGGCG 824
Query 993 TTCCAGAGGAATAGGGTATGTGGAGTTTTATGATACAATGTCTGTCCCTATGGCTATTGC 1052
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 TTCCAGGGGAATAGGGTATGTGGAGTTTTATGATACAATGTCTGTCCCTATGGCTATTGC 884
Query 1053 TCTATCTGGACAACCTCTTCTTGGTCAGCCTGTTATGGTAAAACCTTCTGAAGCTGAGAA 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 TCTATCTGGACAACCTCTTCTTGGTCAGCCTGTTATGGTAAAACCTTCTGAAGCTGAGAA 944
Query 1113 GAATCTTGTTCAGTCAACAACTGCTGCTGCTGGAGCAGGGGGGATGTTGGGCCCCTACTC 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 GAATCTTGTTCAGTCAACAACTGCTGCTGCTGGAGCAGGGGGGATGTTGGGCCCCTACTC 1004
Query 1173 CGGGGGAGCTAGGCGTCTTTATGTTGGTAACCTCCACATTAACATGTCAGAAGATGATTT 1232
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1005 CGGGGGAGCTAGACGTCTTTATGTTGGTAACCTCCACATTAACATGTCAGAAGATGATCT 1064
Query 1233 GCGAAAGGTATTTGAATCATTTGGGAGTGTGGAGCTGGTGCAAGTACCTCGTGATGAAAC 1292
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 GCGAAAGGTTTTTGAACCATTTGGGAGTGTGGAGCTGGTGCAAGTACCTCGTGATGAAAC 1124
Query 1293 TGGTCTCTGCAAAGGATTTGGTTTTGTTCAGTTTGCCCGGCTGGAGGATGCTAGAAACGC 1352
||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1125 TGGCCTCTGCAAAGGATTTGGTTTTGTTCAGTTCGCCCGCCTGGAGGATGCTAGAAACGC 1184
Query 1353 ACTGAATCTAAATGGGCAGTTGGAAATTGCAGGTCGTGCAATCAAGGTGTCAGCTGTAAC 1412
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1185 ACTGAATCTAAATGGGCAGTTGGAGATTGCAGGTCGTGCAATCAAGGTGTCAGCTGTAAC 1244
Query 1413 TGATCAAACTGAAGTCCCAGAAGCTGGACAGACGCAAACCACCGGTGATTTGGATGATGA 1472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 TGATCAAACTGAAGTCCCAGAAGCTGGACAGACGCAAACCACCGGTGATTTGGATGATGA 1304
Query 1473 TGATGGAGGTGGCCTGTCTCTGAATGCACAATCGCGGGCGCTTCTCATGCAAAAGCTCGA 1532
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1305 TGATGGAGGTGGCCTGTCTCTGAATGCACAATCGCGGGCGCTTCTCATGCGAAAGCTCGA 1364
Query 1533 TCGCAGTGGAACTGCATCGAGCACTGGCCTTACTACAGCTGCATCT-TTCAACGGTGGAG 1591
|||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1365 TCGCAGTGGAACTGCATCAAGCACTGGCCTTACTACAGCTGCATCTATTCA-CGGTGGAG 1423
Query 1592 TTTCAACAATCTCTTCGTTGGCAGCTCCTGCTCTTGTACAAGGGTCTTTTCCTGCTGTTG 1651
|||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1424 TTTCTACAATCTCTTCATTGGCAGCTCCTGCACTTGTACAAGGGTCTTTTCCTGCTGTTG 1483
Query 1652 CTGGACTCGCAGGGTCCGGCATTATTCCCGGTGTTATACCAGCTGGTTTCGACCCAATTG 1711
|||||||||||||| || |||||||||||||||| ||| | ||||| |||
Sbjct 1484 CTGGACTCGCAGGGGCCAGCATTATTCCCGGTGTAATA---G---------ACCCAGTTG 1531
Query 1712 GTGTCCCCAGCGAATGTCTGCTGCTTAAAAACATGTTTGATCCATCCACAGAGACTGAAG 1771
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 GTGCCCCCAGCGAATGTCTGCTGCTTAAAAACATGTTTGATCCATCCACAGAGACTGAAG 1591
Query 1772 ATGATTTTGATGAGGATATAAAAGAAGATGTTAAAGAAGAATGCTCCAAATTCGGAAAAC 1831
|||||||||| |||||||| |||||||||||||||| |||||||||||||||||||| |
Sbjct 1592 ATGATTTTGACAAGGATATAGAAGAAGATGTTAAAGACGAATGCTCCAAATTCGGAAATC 1651
Query 1832 TGAATCATATCTTTGTTGACAAGAACAGCGTTGGTTTTGTCTACCTGAGATTTGAGAATG 1891
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1652 TGAATCATATCTATGTTGACAAGAACAGCGTTGGTTTTGTCTACCTGAGATTTGAGAATG 1711
Query 1892 CGCAAGCAGCCATAGGTGCACAACGTGCTCTCCATGGAAGATGGTTTGCTGGAAAGATGA 1951
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1712 TGCAAGCAGCCATAGGTGCACAACGTGCTCTCCATGGAAGATGGTTTGCTGGAAAGATGA 1771
Query 1952 TTACTGCGACTTACATGACTACAGAGGCTTACGAGGCCAAATTCCCCGAGAGTAAGGTCG 2011
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1772 TTACTGCGACTTACATGACTACAGAGGCGTACGAGGCCAAATTCCCCGAGAGTAAGGTCG 1831
Query 2012 TTTAAAGGTGCCGAGACAAAGTTTTTAGTATCGTTATTAAAGCATAAATGAAGATACA-T 2070
||||||| | |||| |||||| ||| ||| ||| | |||||||||||||||||| | |
Sbjct 1832 GCTAAAGGTACTGAGAAAAAGTTGTTATTATGGTTGTCAAAGCATAAATGAAGATAAAAT 1891
Query 2071 CTGCGGTGACAAATCCAATATTGAGTCAAATTTATGTTTATGCTAGATTACCCGCTTCTT 2130
||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||
Sbjct 1892 CTGCGGTGACAAATCCAATCTTGTGTCAAATTTATGTTTATGCTT--TTACCCGCTTCTT 1949
Query 2131 GTATT-TGTAAGTCTCGGTAATGTGTGTGACGGAAACTTTGACACCTTT-CAC-TTT--- 2184
||||| | ||||||||||||||||||||| ||| ||||||||||||||| || |||
Sbjct 1950 GTATTCT-TAAGTCTCGGTAATGTGTGTGCCGGTAACTTTGACACCTTTTCAAGTTTTAA 2008
Query 2185 --CAGTATTTGTATTATGCGAACATGTTTTAGATTTCATAAGAATGTTTT 2232
||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2009 TTCAGTATTTGTATTATGCTAACATGTTTTAGATTTCATAAGAATGTTTT 2058
Score = 981 bits (531), Expect = 0.0
Identities = 610/646 (94%), Gaps = 13/646 (2%)
Strand=Plus/Plus
Query 31 CTTCGTCTCCTTCACAGAGCTTTATTCTTGCCCTAGAGATA-C-CGAGCGGGAGATTCCA 88
|||||||| |||||||||||||| |||||||||| ||||| | ||||||||||||||||
Sbjct 1 CTTCGTCTTCTTCACAGAGCTTTTTTCTTGCCCT--AGATAGCGCGAGCGGGAGATTCCA 58
Query 89 GATTGAGAGCAGCTTCGAGTCTCTCTCTCCTCGCCGTTCCTTTTCGCTTCTTCAAGTTTC 148
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 59 GATTGAGAGCAGCTTCGAGTTTCTCTCTCCTCGCCGTTCCTCTTCGCTTCTTCGAGTTTC 118
Query 149 GTTGCCAGAGAGATTCTAGGTATT------GA-AGT--TATAGAATGGACTTTGATGAGT 199
||| |||||||||||||||||||| || ||| | |||||||||||||||||| |
Sbjct 119 GTTACCAGAGAGATTCTAGGTATTGAGGGAGAGAGTGGTGTAGAATGGACTTTGATGAAT 178
Query 200 ATGAGTACTTAGAGAAGACAGTTGAAAATCCTCACCTGGAGAATGAAGTTGGTAATGGTG 259
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 179 ATGAGTACTTAGAGAAGACAGTTGAAAATCCTCACTTGGAGAATGAAGTTGGGAATGGTG 238
Query 260 GTGGTGATGAGAAAGTCAAATCTGAAGGGAAAGAGAGGAGTAGGAGCTCAAGGCATAGGG 319
||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct 239 GTGGTGATGAGAAAGTCAAATCTGATGGGAAAGAGCGGAGTAGAAGCTCAAGGCATAGGG 298
Query 320 GTGACAAGAAGAAGGAGAGGGATGAAGATGAGGATGGTCGGCGTTCTAAGCGGTCGAGAT 379
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 299 GTGACGAGAAGAAGGAGAGGGATGAAGACGAGGATGGTCGGCGTTCTAAGCGGTCGAGAT 358
Query 380 CGCATCACCGTTCACGTTCTAGGGACAGAGAGAGGGATAGGCATAGAAGTAGCAGGGAGC 439
| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 359 CTCACCACCGTTCACGTTCTAGGGACAGAGAGAGGGATAGGCATAGAAGTAGCCGGGAGC 418
Query 440 ACagagatagagatcgtgaaaaggatgtagataaagaagaaagaaatgggaaagatagag 499
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 419 ACAGAGATAGAGATCGTGAAAAGGATATAGATAAAGAAGAAAGAAATGGGAAAGATAGAG 478
Query 500 agagGGACAGAGATAAGGATCGAGACAGTAAAGGGCGTGACCATGAAAAAGATCGGTCAC 559
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 AGAGGGACAGAGATAAGGATCGAGACAGTAAAGGGCGTGACCATGAAAAAGATCGGTCAA 538
Query 560 GAAGAAGTAGAAGTCGATCAGAGCGACATCGGAGTCAGGAAAGAGAAAAGAGCTTGGAAA 619
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 539 GAAGGAGTAGAAGTCGATCAGAGCGACATCGGAGTCAGGAAAGAGAAAAGAGCCTGGAAA 598
Query 620 TAGAACCTAAGGAAAGAGAGACCAAGGACCGGGATAGAGATCGCAG 665
| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTGAACCTAAGGAAAGAGAGACCAAGGACCGGGATAGAGATCGCAG 644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85779231740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5