BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16960.1
Length=1644
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480576 jgi|Araly1|480576|fgenesh2_kg.3__3277__AT2G16960.1 2050 0.0
Ahg931532 jgi|Araly1|931532|scaffold_303989.1 601 6e-171
> Ahg480576 jgi|Araly1|480576|fgenesh2_kg.3__3277__AT2G16960.1
Length=1659
Score = 2050 bits (1110), Expect = 0.0
Identities = 1465/1629 (90%), Gaps = 54/1629 (3%)
Strand=Plus/Plus
Query 43 GAGTGGAATTTAAGAGCATGCAGTGCAAAATTTATTGGTATTCTCGCTAATGTATTTGGA 102
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 58 GAGTGGAATTTAAGAGCATGCAGTGCAAAATTTATTGGCATTCTCGCTAATGTATTTGGA 117
Query 103 GATGAAATTCTTCTAACACTCATGCCTCTTATTGAGGCAAAACTATCAAAAT-TCGATGA 161
|||||||| |||||||||||||||||||||||| ||||||||||||||| || | |||||
Sbjct 118 GATGAAATCCTTCTAACACTCATGCCTCTTATTAAGGCAAAACTATCAAGATAT-GATGA 176
Query 162 TGAGACTTGGAAAGAGAGGGAAGCTGCAGTGTT-TGCTTTTGGAGCCATTGCTGAAGGAT 220
||||||||||||||| ||||||| ||| || || |||| ||||||| |||||||||||||
Sbjct 177 TGAGACTTGGAAAGAAAGGGAAGTTGCTGT-TTATGCTCTTGGAGCTATTGCTGAAGGAT 235
Query 221 GCAATAGttttttttACCCTCA--------T-TT---GATTGTAGCAATCCTTCGTCGTC 268
|||||| |||| |||||||| | || ||||||| |||||||||||||||
Sbjct 236 GCAATAAAATTTTCTACCCTCACTTTGCCTTGTTACAGATTGTAACAATCCTTCGTCGTC 295
Query 269 TTTTAGATGATCAATCTCCTCTCGTACGAAGGATAACGTGTTGGACACTTTATCAATTTG 328
||||| ||||||||| ||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 296 TTTTAAATGATCAATTTCCTCTCGTACGAAGAATAACGTGCTGGACACTTTATCAATTTG 355
Query 329 GCACATATGTTTTTGAGGAAAGTAATTTGGAGAATAGTAAACTCTTTACAAAAGTTCTTC 388
||||||||||||||||||||| ||||| || ||||||| ||||||||| ||||||||||
Sbjct 356 GCACATATGTTTTTGAGGAAAATAATTCGGTGAATAGTGAACTCTTTAGAAAAGTTCTTA 415
Query 389 ATGGTTTTCGTT-TCAAACTTTTGGATTCGAACATC-TGGGTCCAGGAAGCTGCATGTTT 446
| ||| ||| || ||||| |||||||| |||||| | || ||||||||||||||||||||
Sbjct 416 AGGGTCTTC-TTCTCAAAGTTTTGGATACGAACA-CTTGTGTCCAGGAAGCTGCATGTTT 473
Query 447 GGCTTTGACAACTTTTGAAGAGGATGCTGGTGACAAA-TTAGTACCACACCTGGAAAAA- 504
|||||||||||| ||||||||||||||||||| ||| |||||||||||||| ||||||
Sbjct 474 AGCTTTGACAACTCTTGAAGAGGATGCTGGTGA-AAACTTAGTACCACACCT-GAAAAAG 531
Query 505 ATATT-ACAACAGCTAATGCGCGCTTTTGGAAAGTATCAGAAGA-GGAACTTAAAAGTTC 562
||||| || ||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 532 ATATTAAC-ACAGCTAATGCGCGCTTTTGGAAAGTATCAG-AGACGGAACTTAAAAGTTC 589
Query 563 TTCTTGATGCTATTAGAGCACTAGCAGATTCAGTTGGAATCAATCTGAACAAGCGTGCTT 622
|| ||||||||||||||||||||||||||||||||||||| ||||||| |||| | |||
Sbjct 590 TTTTTGATGCTATTAGAGCACTAGCAGATTCAGTTGGAATTGATCTGAATAAGCCTTCTT 649
Query 623 ATATTAAGATTTTGATTCCCCCACTGGTTTCAACGTTGGAACAAATTTCCA-ATTCAGAT 681
|| |||||||||||||||||||||||||||| |||| ||||||||||| || ||||||||
Sbjct 650 ATCTTAAGATTTTGATTCCCCCACTGGTTTCGACGTCGGAACAAATTT-CAGATTCAGAT 708
Query 682 AAAGATGTAATTCCATTGCTGAAGTGCTTCACATCCATTTCTAAGGCTTTAGAAGTAGGA 741
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 709 AAAGATGTAATTCCATTGCTAAAATGCTTCACATCCATTTCTAAGGCTTTAGAAGTAGGA 768
Query 742 TTCGCTCCATTTTCTTGGTATGTTTTCGAGAGGTGCATGGATATCCTTCAACTACAACAG 801
|||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 769 TTCGCTCCATTTTCTTTGTATGTTTTTGAGAGGTGCATGGATATCCTCCAACTACAACAG 828
Query 802 CTAGCTAAGGTTGATCATGATTTTGCCGGGGTTCAATACGACC-AAAATATCGTCGTTTG 860
|||||||||||||||||||||||||| | |||| ||||||||| |||| ||||| |||||
Sbjct 829 CTAGCTAAGGTTGATCATGATTTTGCTGAGGTTGAATACGACCCAAAA-ATCGTTGTTTG 887
Query 861 TTCTCTTGAAtttttttCTGGACTTTCTAAAGGGCTTGTCAGTGGGATAGAGTCTCTGGT 920
||||||||||||| |||||||| || || ||||||||| ||||||||||||||||||| |
Sbjct 888 TTCTCTTGAATTTGTTTCTGGAGTTGCTGAAGGGCTTGGCAGTGGGATAGAGTCTCTGCT 947
Query 921 TTCACAAAGTAATCTAAGGGATATGCTTCTTAAGTGTTTCATGGATGAAACTCCAGATGT 980
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||
Sbjct 948 TTCACAAAGTAATCTAAGGGATATGCTTCTCAAGTGTTGCATGGATGAAACTCCTGATGT 1007
Query 981 TAGAGAAAGTGCTTTTGCCCTTATTTGTCATCTTACAAAAAGTGCAAATTTTAGCGGAGA 1040
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||
Sbjct 1008 TAGAGAAAGTGCTTTTGCCCTTATTTGTGATCTTACAAAAAGTGAAAATTTTAGTGGAGA 1067
Query 1041 AAACCTTTCTGCTGCGAATAATGCTTGTAAAGCAATAGGAGAATTAGCGGTCAAGTTTCT 1100
||||||| |||||| ||||||||||||||||| || ||||||||||| | || |
Sbjct 1068 AAACCTTAGTGCTGCAAATAATGCTTGTAAAGCCATTGGAGAATTAGC--T----TT-C- 1119
Query 1101 GGTAAAGAACAAACTCGTGAATGATATGAACTCAATGTTTCAGTATCCTCAAGAAGTCTC 1160
|| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1120 ---AA-GAACAAACTCGTGAATGATAGGAACTCAATGTTTCAGTTTCCTCAAGAAGTCTC 1175
Query 1161 ACCAATTGTGACCAATGTTGTCTATTCATTAGGCATGATTATTCAAC-TCGGAGAGACAC 1219
|||| |||||||||||||||||| ||| |||||| ||||||||||| | ||||||||||
Sbjct 1176 ACCAGTTGTGACCAATGTTGTCTCTTCCTTAGGCCTGATTATTCAAAAT-GGAGAGACAC 1234
Query 1220 TAGAGTTGAAGAGTTTAACTACACTAGTTGAATACAATGCAATTGAACTAGCTATGAACA 1279
|||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1235 TAGAATTGAAGAGTGCAACTACACTAGTTGAATACATTGCAATTGAACTAGCTATGAACA 1294
Query 1280 GTGCAATTACCGTTGGGATACTAGCACGGATTCGTCCAGACCTCAGTGCAC-G-ATCCAT 1337
||||||||||| |||||||||||||| |||| |||||||||| |||||| | | | ||
Sbjct 1295 GTGCAATTACCATTGGGATACTAGCATTTATTCATCCAGACCTCGGTGCACCGCA-C-AT 1352
Query 1338 TGAGAACTTCATGAAGCCTTGGTGCATGAGATTGGCAACGTTAGATGATGACAGTACAAA 1397
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1353 AGAGAACTTCATGAAGCCTTGGTGCATGAGATTGGCAACGTTAGATGATAACAGTACAAA 1412
Query 1398 AGAAAATGCATTTCAAGGGTTATGTGAAATGGTTAAGGTGAATCCATCAAGATATGTCAG 1457
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1413 AGAAACTGCATTTCGAGGGTTATGTGCAATGGTTAAGGTGAATCCATCAAGATATGTCAG 1472
Query 1458 CTCCGTTGCTTTCATATGCTTAGCGATCGCAAGCTGGAAAGATATG-GAAAACAAGGTCA 1516
||| |||||||| ||||||||||| || ||||||||| |||| | ||| || ||||
Sbjct 1473 CTCGGTTGCTTTTATATGCTTAGCCATTGCAAGCTGGCAAGAAACAAGAAG-CATTGTCA 1531
Query 1517 TCCAAAGCGAATTCTCCAAAGTGCTGATAGG-CTATAAAAACATGCTTGGAAAAAACTCA 1575
|||||| |||||||||| ||||||| | | | |||||||||||||||||||| |||||||
Sbjct 1532 TCCAAAACGAATTCTCCCAAGTGCTAA-ACGACTATAAAAACATGCTTGGAAGAAACTCA 1590
Query 1576 TGGGAAGAATGTCTCTCTGTTTTGGATCCTCTTGCTAAGGAAAGGCTTGCTGCGAGGTAT 1635
|||||||||||||| ||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 1591 TGGGAAGAATGTCTTTCTGTTTTGGATCCTGTTTTTAAGGAAAGGCTTGCTGAAAGGTAT 1650
Query 1636 CAAGTGTGA 1644
|||||||||
Sbjct 1651 CAAGTGTGA 1659
> Ahg931532 jgi|Araly1|931532|scaffold_303989.1
Length=2716
Score = 601 bits (325), Expect = 6e-171
Identities = 779/991 (79%), Gaps = 59/991 (6%)
Strand=Plus/Plus
Query 45 GTGGAATTTAAGAGCA-TGCAGTGCAAAATTTATTGGTATTCTCGCTAATGTATTTGGAG 103
||||||||||||| | || |||||| | ||||| |||||| |||||||||||||||
Sbjct 1115 GTGGAATTTAAGA-AAGTGTAGTGCAGCAGCTATTGACATTCTCTCTAATGTATTTGGAG 1173
Query 104 ATGAAATTCTTCTAACACTCATGCCTCTTATTGAGGCAAAACTATCAAAATTC-GATGAT 162
||||||| |||| | || ||||||| || ||| || |||| |||| | || | ||||
Sbjct 1174 ATGAAATCCTTCCAGCAATCATGCCCCTAATTCAGACAAATTTATC-AGCCTCTGGTGAT 1232
Query 163 GA-GACTTGGAAAGAGAGGGAAGCTGCAGTGTTT-GCTTTTGGAGCCATTGCTGAAGGAT 220
|| | | |||||| | ||||||||||| || ||| ||| |||| || ||| ||||||| |
Sbjct 1233 GACG-CCTGGAAACAAAGGGAAGCTGCTGT-TTTGGCTCTTGGGGCTATTTCTGAAGGCT 1290
Query 221 GCAAT-AGttttttttACCCTCA--T-T-T--GATTGTAGCAATCCTTCGTCGTCTTTTA 273
|| || | | | |||||||||| | | | ||| || ||| | |||| || |||||||
Sbjct 1291 GC-ATGAATGGTCTTTACCCTCATTTGTCTGAGATCGTGGCATTTCTTCTTCCTCTTTTA 1349
Query 274 GATGATCAA-TCTCCTCTCG-TACGAAGGATAACGTGTTGGACACTTTATCAATTTGGCA 331
|||||| || || || || | ||||||| ||| | || ||||| |||| || ||||||||
Sbjct 1350 GATGATAAATTC-CCGCT-GATACGAAGCATATCTTGCTGGACGCTTTCTCGATTTGGCA 1407
Query 332 CA-TATGTTTTTGAGGAAAGT---AATTTGGA-GAATAGTAAACTCTTTACA-AAAGTTC 385
| ||| || | |||||||| ||| | | | || | ||| ||| | | |||||
Sbjct 1408 -AGTATCTTATCCAGGAAAGTGGCAATCCGAAGGGTTA-TGAACAATTT-GAGAGAGTTC 1464
Query 386 TTCAT-GGTTTTCGT-TTCAAACTTTTGGATTCGAAC-ATCTGGGTCCAGGAAGCTGCAT 442
|| || ||| ||| | || ||| |||||| ||||| | | |||||||||| ||||| |
Sbjct 1465 TT-ATGGGTCTTC-TCCGCAGACTCTTGGATACGAACAAGC-GGGTCCAGGAGGCTGCCT 1521
Query 443 GTTTGGC-TTTGACAACTTTTGAAGAGGATGCTGGTGACA-AATTAGTACCACACCTGGA 500
||| || |||| ||||| ||||||||||||||| || | | ||||| ||||||||||
Sbjct 1522 GTTCAGCTTTTG-CAACTGTTGAAGAGGATGCTGCCGA-AGAGTTAGTGCCACACCTGGG 1579
Query 501 AAAAATATTACAACAGCTAATGCGCGCTTTTGGAAAGTATCAGAAGA-GGAACTTAA-AA 558
|||| | || || || ||| |||||||||||||||||||| ||| ||||||||| ||
Sbjct 1580 GGTAATACTGCAGCATCTGATGTGCGCTTTTGGAAAGTATCAG-AGACGGAACTTAAGAA 1638
Query 559 GTTCTTCT-TGATGCTATTAGAGCACTAGCAGATTCAGTT-G-GAATCAATCTGAACAAG 615
|| || | |||||||||| || |||| |||||||||||| | | | | | ||||||||
Sbjct 1639 -TTGTT-TATGATGCTATTGGAACACTGGCAGATTCAGTTAGAGGA-GAGT-TGAACAAG 1694
Query 616 CGTGCTTATATTAAGATTTTGATTCCCCCACTGGTTTCAACGTTGG-AACAAATTTCCAA 674
| ||||||| || | ||| |||| |||||||||||| ||| | ||| |||| |||||||
Sbjct 1695 CCTGCTTATCTTGATATTCTGATGCCCCCACTGGTTGCAAAG-TGGCAACAGCTTTCCAA 1753
Query 675 TTCAGATAAAGATGTAATTCCATTGCTGA-AGTGCTTCACATCCATTTCTAAGGCTTTAG 733
||||||||||||| || ||||| |||| | |||||||||||||||||||| |||||||||
Sbjct 1754 TTCAGATAAAGATCTATTTCCACTGCT-AGAGTGCTTCACATCCATTTCTCAGGCTTTAG 1812
Query 734 AAGTAGGATTCGCTCCATTTTCTTGGTATGTTTTCGAGAGGTGCATGGATATCCTTCAAC 793
|||||||| ||||||||| || | ||||||| |||| |||||||||||| | |||
Sbjct 1813 GTGTAGGATTTGCTCCATTTGCTCAGCCTGTTTTCCAGAGATGCATGGATATCATCCAAT 1872
Query 794 TACAACAGCTAGCTAAGGTTGATCATGATTTTGCCGGGGTTCAATACGACCA-A-AATAT 851
| || ||||| ||||||||||||| | || ||| |||| ||| || || | | ||| |
Sbjct 1873 TGCAGCAGCTGGCTAAGGTTGATCCTTCTTCTGCTGGGGCTCAGTATGA-TAGAGAAT-T 1930
Query 852 CGTCGTTTGTTCTCTTGAAttt-ttttCTGGACTTTCTAAAGGGCTTGTCAGTGGGATAG 910
| | ||||||||||||| |||| ||||||||||| || ||||||||| |||||||||||
Sbjct 1931 CATTGTTTGTTCTCTTG-ATTTGCTTTCTGGACTTGCTGAAGGGCTTGGCAGTGGGATAG 1989
Query 911 AGTCTCTGGTTTCACAAAGTAATCTAAGGGATATGCTTCTTAAGTGTTTCATGGATGAAA 970
|||||||||||||||||||||| ||||||||| ||||||| || |||| ||| ||||||
Sbjct 1990 AGTCTCTGGTTTCACAAAGTAACCTAAGGGATCTGCTTCTCAATTGTTGCATTGATGAAG 2049
Query 971 CTCCAGATGTTAGAGAAAGTGCTTTTGCCCT 1001
|||| ||||| ||| ||||||||||||||||
Sbjct 2050 CTCCTGATGTCAGACAAAGTGCTTTTGCCCT 2080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61630016410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5