BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16980.2
Length=1566
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480580 jgi|Araly1|480580|fgenesh2_kg.3__3281__AT2G16980.2 2150 0.0
Ahg906520 jgi|Araly1|906520|Al_scaffold_0003_3648 710 0.0
> Ahg480580 jgi|Araly1|480580|fgenesh2_kg.3__3281__AT2G16980.2
Length=1497
Score = 2150 bits (1164), Expect = 0.0
Identities = 1380/1481 (93%), Gaps = 27/1481 (2%)
Strand=Plus/Plus
Query 1 GAAGTGAAGTTTAGGAGAGGAAGAGAGATGGAGGTATTTAGACTTGGAGAGCTGAGACAC 60
||||| |||||||||||||| ||||||||||||| ||||||| |||||||||||||||||
Sbjct 1 GAAGTTAAGTTTAGGAGAGG-AGAGAGATGGAGGAATTTAGAGTTGGAGAGCTGAGACAC 59
Query 61 CTACTGGTGACGGTTTTCTTGTCGGGGCTCGCCGAATACTTGATAAGGCCAGTGATGACT 120
||||| ||||||||||||||||||| |||||||||||||| | |||||||||||||||
Sbjct 60 ATACTGATGACGGTTTTCTTGTCGGGATTCGCCGAATACTTGCTTAGGCCAGTGATGACT 119
Query 121 GACGTCACCGTAGCCGCGGTTTGCTCCGGCCTAGACGATTCATGTTCTTTGGCCGTCTAT 180
||||||||||| ||||||||||||||||||||| | |||||||||||| | |||||||||
Sbjct 120 GACGTCACCGTCGCCGCGGTTTGCTCCGGCCTAAATGATTCATGTTCTCTCGCCGTCTAT 179
Query 181 CTCACCGGAGTACAACAAGTGACGGTAGGAATGGGGACAATGGTAATGATGCCAGTGATC 240
|||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||
Sbjct 180 CTCACCGGAGTACAACAAGTGACGGTAGGACTTGGGACAATGATAATGATGCCAGTGATT 239
Query 241 GGCAATCTATCGGACAGATATGGAATCAAAGCAATGCTCACTCTTCCCATGTGCCTCTCT 300
|| |||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 240 GGAAATCTATCCGACAGATATGGAATCAAAGCATTGCTCACTCTTCCAATGTGCCTCTCT 299
Query 301 GTTCTTCCTCCAGCAATATTAGGGTACAGAAGGGATACCAATTTCTTTTACGCATTTTAT 360
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 300 ATTCTTCCTCCAGCAATATTAGGGTACAGAAGGGATACCAATTTCTTTTATGCATTTTAT 359
Query 361 GTAATCAAGACCCTATTCGATATGGTCTGCCAAGGCACCATTGACTGTCTCGCTAACGCT 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 360 ATAATCAAGACTCTATTCGATATGGTCTGCCAAGGCACCATTGACTGTCTCGCTAATGCT 419
Query 421 TATGTGGCAAAAAATGTTCATGGCACAAAAAGAATATCAATGTTCGGAATTTTAGCAGGT 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TATGTGGCTAAAAATGTTCATGGCACAAAAAGAATATCAATGTTCGGAATTTTAGCAGGT 479
Query 481 GTCAGCTCGATTTCCGGAGTTTGTGCATCACTATCAGCTCGTTTTTTATCCATAGCTTCG 540
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 480 GTCAGCTCAATTTCCGGAGTTTGTGCATCACTCTCAGCTCGTTTTTTATCCATAGCTTCG 539
Query 541 ACTTTTCAGGTTGCAGCTATATCATTATTCATTGGCCTGGTGTATATGAGGGTTTTCCTA 600
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 540 ACTTTTCAGGTTGCAGCTATATCATTATTCATTGGCCTGGTGTATATGAGAGTTTTCCTA 599
Query 601 AAAGAGAGGTTACAAGATGCTGATGATGATGATGAAGCTGATAGTGGTGGTTGTAGAAGT 660
||||||||||||||||| ||||||||| | | | | |||||||||| | ||||||||
Sbjct 600 AAAGAGAGGTTACAAGA---TGATGATGA--A-G-A-C-GATAGTGGTGATGGTAGAAGT 650
Query 661 CATCAAGAGGTTCATAATGGTGGTGATCTAAAGATGTTA--A-CTGAGCCGATACTAAGA 717
||||||||||||||| |||||| ||||| ||||||||| | | |||||| ||||||||
Sbjct 651 CATCAAGAGGTTCATGATGGTGAAGATCTGAAGATGTTATTAGCAGAGCCGGTACTAAGA 710
Query 718 GATGCACCAACAAAGACACATGTCTTCAACAGTAAGTATTCGTCTTGGAAAGATATGGTC 777
|| ||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 711 GACACACCAACTAAGACACATGTCTTCAACACTAAGTATTCGTCTTTGAAAGATATGGTC 770
Query 778 AGCTTGATAAAT-AATAGCACTATACTCATTCAAGCATTGGTTGTTACATTCTTTGCTAC 836
|||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 771 AGCTTGAT-ATTGAATAGCACCATACTCATTCAAGCATTGGTTGTTACATTTTTTGCTAC 829
Query 837 CTTCTCGGAAAGTGGAAGGGGGTCTGCTCTCATGTATTTTCTGAAAGCTCGTTTTGGGTT 896
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||
Sbjct 830 CTTCTCGGAAAGTGGAAGGGGGTCTGCTCTCATGTATTTTTTGAAAGCCCGTTTTGAGTT 889
Query 897 CAACAAAAATGACTTTGCTGAGCTA-TTCTTGTTGGTTACCATCATTGGCTCCATCTCCC 955
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 890 CAACAAAAATGACTTTGCTGAGCTATTTC-TGTTGGTTACCATCATTGGCTCCATCTCCC 948
Query 956 AGCTATTTATATTGCCGACT-TTAAG-TTCTACCATTGGAGAACGTAAGGTGTTATCAAC 1013
|||| |||||| |||| | | || | |||| ||||||||||||||||||||||||||||
Sbjct 949 AGCTGTTTATACTGCC-AATATT-GGTTTCTGCCATTGGAGAACGTAAGGTGTTATCAAC 1006
Query 1014 GGGGCTTCTTATGGAATTCTTCAACGCGACTTGTCTTAGTGTTGCATGGTCACCATGGGT 1073
||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||
Sbjct 1007 AGGGCTTCTTATGGAATTCTTCAACGCGGCTTGTCTCAGTGTTGCTTGGTCACCATGGGT 1066
Query 1074 TCCTTATGCCATGACCATGCTTGTACCCGGAGCCATGTTTGTGATGCCATCTGTTTGTGG 1133
|||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1067 TCCTTATGCCATGACCTTGCTTGTGCCCGGAGCCATGTTTGTGATGCCATCGGTTTGTGG 1126
Query 1134 TATTGCGTCAAGACAAGTTGGATCCAGTGAACAGGGGAAGGTCCAAGGATGTATATCCGG 1193
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1127 TATTGCCTCAAGACAAGTTGGATCCGGTGAACAGGGGAAGGTCCAAGGATGTATATCCGG 1186
Query 1194 GGTAAGGGCTTTTGCTCAAGTTGTGGCTCCATTTGTATATAGTCCATTGACAGC-TCTAT 1252
||||||||||||||||||||||||||||||||||||||||||||||||||| || | | |
Sbjct 1187 GGTAAGGGCTTTTGCTCAAGTTGTGGCTCCATTTGTATATAGTCCATTGACGGCGT-TGT 1245
Query 1253 TTCTCTCCGAAAATGCACCATTCTATTTCCCTGGATTCAGCATTCTATGCATCGCCATCT 1312
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 TTCTCTCCGAAAAAGCACCATTCTATTTCCCTGGATTCAGCATTCTATGCATCGCCATCT 1305
Query 1313 CTTTGATGATCGGATTCCTTCAGAGTCTTCTGATAAAAGATCATCCTTCTTTGCCCTTAG 1372
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1306 CTTTGATGATCGGATTCCTTCAGAGTCTCCTGATAAAAGATCATCCTTCTTCGCCCTTAG 1365
Query 1373 TGAACATAACAATCAACAACCCTTCAAAAGCGGAAGCTTGACAAGAAATATATCAAGAAG 1432
| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1366 TAAACATAGCAATCAACAACCCTTCAAAAGCGGAAGCTTGACAAGAGGTATATCAAGAAG 1425
Query 1433 CAAATGTAACT-GTAATATTGTAC-AAATTTGCTTCAAATT 1471
||||||||||| | |||||||| | |||||||||| |||||
Sbjct 1426 CAAATGTAACTTG-AATATTGT-CGAAATTTGCTTAAAATT 1464
> Ahg906520 jgi|Araly1|906520|Al_scaffold_0003_3648
Length=1236
Score = 710 bits (384), Expect = 0.0
Identities = 634/755 (84%), Gaps = 16/755 (2%)
Strand=Plus/Plus
Query 28 ATGGAGGTATTTAGACTTGGAGAGCTGAGACACCTACTG-GTGACGG-TTTTCTTGTCGG 85
||||| | || |||| |||||||||| |||||| | || | | || ||||| ||||||
Sbjct 1 ATGGAAGAATATAGAATTGGAGAGCTTAGACACATTTTGACT-ATGGTTTTTC-TGTCGG 58
Query 86 GGCTCGCCGA-ATACTTGATAAGGCCAGTGATGACTGACGTCACCGTAGCCGCGGTTTGC 144
|| | | | | | |||| | ||||| |||||||||||||||||||| || || ||||||
Sbjct 59 GGTTTG-CTATTTTCTTGGTGAGGCCGGTGATGACTGACGTCACCGTTGCTGCCGTTTGC 117
Query 145 TCCGGCCTAGACGATTCATGTTCTTTGGCCGTCTATCTCACCGGAGTACAACAAGTGACG 204
|||||| || | |||||||||||| | ||||| || ||||||||||| ||||||||||||
Sbjct 118 TCCGGCATAAATGATTCATGTTCTCTAGCCGTTTACCTCACCGGAGTTCAACAAGTGACG 177
Query 205 GTAGGAATGGGGACAATGGTAATGATGCCAGTGATCGGCAATCTATCGGACAGATATGGA 264
|| || | ||||||||||||||||||||||||||||| | |||||| ||| ||||||||
Sbjct 178 GTGGGGCTAGGGACAATGGTAATGATGCCAGTGATCGGGAGTCTATCCGACCGATATGGA 237
Query 265 ATCAAAGCAATGCTCACTCTTCCCATGTGCCTCTCTGTTCTTCCTCCAGCAATATTAGGG 324
||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 238 ATCAAAGCATTGCTCACTCTTCCCATGTGCCTCTCTATTCTTCCTCCAGCGATATTAGGG 297
Query 325 TACAGAAGGGATACCAATTTCTT-TTACGCATTTTATGTAATCAAGACCCTATTCGATAT 383
|| ||||||||||| ||||| || || ||||||||| ||| |||||| |||||||||||
Sbjct 298 TATAGAAGGGATACGAATTTTTTCTTT-GCATTTTATATAACCAAGACTCTATTCGATAT 356
Query 384 GGTCTGCCAAGGCACCATTGACTGTCTCGCT-AACGCTTATGTGGCAAAAAATGTTCATG 442
|||||||| |||| | ||||||||||| || || ||||||||||| ||||||||||| |
Sbjct 357 GGTCTGCCGAGGCGCTGTTGACTGTCTCTCTCAA-GCTTATGTGGCGAAAAATGTTCAGG 415
Query 443 GCACAAAAAGAATATCAATGTTCGGAATTTTAGCAGGTGTCAGCTCGATTTCCGGAGTTT 502
||| |||||||||| ||||||| ||| |||| || ||||||| | |||||||||||||
Sbjct 416 GCAAAAAAAGAATAGCAATGTTTGGAGTTTTGGCCGGTGTCAAAACAATTTCCGGAGTTT 475
Query 503 GTGCATCACTATCAGCTCGTTTTTTATCCA-TAGCTTCGACTTTTCAGGTTGCAGCTATA 561
|||| || | |||||||||||| || || ||||||| |||||||||||||||||||||
Sbjct 476 TTGCAACATTCTCAGCTCGTTTTCTA-CCTGTAGCTTCCACTTTTCAGGTTGCAGCTATA 534
Query 562 TCATTATTCATTGGCCTGGTGTATATGAGGGTTTTCCTAAAAGAGAGGTTACAAGATGCT 621
|||||||| ||||| |||||||| ||||| |||||||| ||||| || ||||| ||||
Sbjct 535 TCATTATTAATTGGTCTGGTGTACATGAGAGTTTTCCTCAAAGATAGATTACACGATGAA 594
Query 622 GATGATGATGAT-GAAGCTGATAGTGGTGGTTGTAG-AAGTCATCAAGAGGTTCATAATG 679
||| | || || | | |||| ||||| || |||| || ||||||| | |||||||| |
Sbjct 595 GATAACGACAATTGTGG-TGATGGTGGTAGTAGTAGCAA-TCATCAAAAAGTTCATAAAG 652
Query 680 GTGGTGATCTAAAGATGTTAACTGAGCCGATACTAAGAGATGCACCAACAAAGACACATG 739
|| ||||||||| ||||||| | |||| || |||||||| |||||||||||||||||||
Sbjct 653 GTAGTGATCTAAGGATGTTAGCAAAGCCAATTCTAAGAGACGCACCAACAAAGACACATG 712
Query 740 TCTTCAACAGTAAGTATTCGTCTTGGAAAGATATG 774
||||||||| |||||| ||||||| |||| |||||
Sbjct 713 TCTTCAACACTAAGTACTCGTCTTTGAAAAATATG 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58658977300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5