BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G16990.1
Length=1506
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480581 jgi|Araly1|480581|fgenesh2_kg.3__3282__AT2G16990.2 2211 0.0
Ahg480580 jgi|Araly1|480580|fgenesh2_kg.3__3281__AT2G16980.2 872 0.0
> Ahg480581 jgi|Araly1|480581|fgenesh2_kg.3__3282__AT2G16990.2
Length=1533
Score = 2211 bits (1197), Expect = 0.0
Identities = 1378/1463 (94%), Gaps = 21/1463 (1%)
Strand=Plus/Plus
Query 41 TCGGCAAGCATAGGCTAAAAGGTGATGGAGGATGGAATTGGAGGGCTGAGACACATGTTG 100
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 84 TCGGCAAACATAGGCTAAAAGGTGATGGAGGATGGAATTGGAGGGCTGAGACACATGTTG 143
Query 101 GCGACGGTTTTTC-TTTCTGCCTTCGCCGGATTCATGGTAGTACCAGTGATTACTGATGT 159
|||||| | ||| ||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 144 ACGACGG-TCTTCTTTTCTGCCTTCGCCGGATTCATGGTAGTACCTGTGATTACCGATGT 202
Query 160 CACCGTCGCTGCTGTATGCTCTGGCCCTGACGACTCATGTTCTCTTGCCGTTTACCTCAC 219
|||||||| || || || || ||||| ||||||||||||||||| ||||||||||||||
Sbjct 203 TACCGTCGCCGCCGTGTGTTCCGGCCCAGACGACTCATGTTCTCTAGCCGTTTACCTCAC 262
Query 220 TGGTTTTCAACAAGTGGCAATAGGGATGGGGACTATGATAATGATGCCAGTAATTGGGAA 279
|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 263 TGGTTTCCAACAAGTGGCGATAGGGATGGGGACAATGATAATGATGCCAGTAATTGGGAA 322
Query 280 TCTATCAGACAGATATGGGATTAAAACAATCCTCACCCTTCCCATGTGTCTCTCCATTGT 339
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 323 TCTATCAGACAGATATGGGATTAAAACAATCCTCACACTTCCTATGTGTCTCTCCATTGT 382
Query 340 TCCTCCTGTAATTTTAGGATACAGAAGGGATATAAAATTCTTTTATGTGTTTTATATAAG 399
||||||||||||||||||||||||||| |||| ||||||||| ||||||| |||||||||
Sbjct 383 TCCTCCTGTAATTTTAGGATACAGAAGAGATACAAAATTCTTCTATGTGTATTATATAAG 442
Query 400 CAAGATTCTGACCT-CTATGGTATGTGAAGGCACCGTTGACTGCCTAGCTTATGCATATG 458
||||||||||| || |||||||||||||||||||| ||||||| || ||| |||||||||
Sbjct 443 CAAGATTCTGA-CTGCTATGGTATGTGAAGGCACCATTGACTGTCTCGCTAATGCATATG 501
Query 459 TGGCAGTAAATATTCATGGCAGTACAAGAATTTCAGCTTTTGGTATTTTAGCTGGTATCA 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 TGGCAGTAAATATTCATGGCAGTACAAGAATTTCAGCTTTTGGTATTTTAGCTGGTATCA 561
Query 519 AAACAATTGCTGGACTTTTTGGAACATTAGTTGCTCGTTTTCTTCCCATAGCTTTGACTT 578
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 562 AAACAATTGCTGGACTTTTTGGAACATTAGTCGCTCGTTTTCTACCCATAGCTTTGACTT 621
Query 579 TTCAGGTTTCTGCTATATCATTTTTCGTTGGCCTAGTGTACATGAGAGTTTTCCTAAAAG 638
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 622 TTCAGGTTTCTGCTATATCATTTCTCGTTGGCCTAGTGTACATGAGAGTTTTCCTAACAG 681
Query 639 AAAAGCTAAACGATGATGAAGATGATGATCTTCATC-ATGGTACGTATCATCAAGAGGAT 697
|||| | | | || | |||||||||| ||||| | |||||||||||||||||||||
Sbjct 682 AAAA--T---C--T-AT-ACGATGATGATCATCATCGA-GGTACGTATCATCAAGAGGAT 731
Query 698 CATGATAGTATTAATACCACAATGTTAGCAGAGCCGATTCTGAACGATAGACCCATCAAA 757
||||||||||||||| ||||||||||||||||||||||||||||||| | |||||| |||
Sbjct 732 CATGATAGTATTAATGCCACAATGTTAGCAGAGCCGATTCTGAACGAGACACCCATAAAA 791
Query 758 ACACAAGTCTTTCACAAGAAGTATTCTTCATTGAAAGATATGATCAGCTTGATGAAGACT 817
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 792 ACACAAGTCTTTCACAAGAAATATTCTTCATTGAAAGATATGATCAGCTTGATGAAGACT 851
Query 818 AGCACCATATTCTTTCAAGCATTGGTTGTTACATTCTTCAGCAGTTTTTCAGATAGTGGA 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 AGCACCATATTCTTTCAAGCATTGGTTGTTACATTCTTCAGCAGTTTTTCAGATAGTGGA 911
Query 878 ATGGAGTCTGCTTTCTTGTACTTTTTGAAAGCACGTTTTGGATTTGACAAGAAGCAGTTT 937
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 912 ATGGAGTCTGCTTTCTTGTACTTTTTGAAAGCACGTTTTGGATTTGACAAGAAACAGTTT 971
Query 938 GCTGATCTCTTGCTGTTGATTACCATCGTTGGGTCTATCTCTCAATTGTTTGTACTGCCA 997
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 GCTGATCTCCTGCTGTTGATTACCATCGTTGGGTCTATCTCTCAATTGTTTGTACTGCCA 1031
Query 998 AGATTTGCATCGGCCATTGGAGAATGCAAGCTTTTATCAACAGGGCTTTTTATGGAATTC 1057
||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1032 AGATTTGCATCTGCCATTGGAGAACGCAAGCTTTTATCAACAGGGCTTTTTATAGAATTC 1091
Query 1058 ATAAACATGGCCATTGTCAGCATTTCTTGGGCACCATGGGTTCCTTATCTCACCACTGTG 1117
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1092 ATAAACATGGCCATTGTCAGCATTTCTTGGGCACCATGGGTTCCTTATCTCATCACTCTG 1151
Query 1118 TTTGTACCTGGAGCCTTATTTGTGATGCCATCGGTTTGTGGTATTGCCTCGAGACAAGTT 1177
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1152 TTTGTACCTGGAGCCTTATTTGTGATGCCATCGGTTTGTGGTATTGCCTCAAAACAAGTT 1211
Query 1178 GGACCTGGTGAACAGGGAAAAGTTCAAGGATGCATATCTGGAGTGAGGTCCTTTGGCAAA 1237
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1212 GGACCTGGTGAACAGGGAAAAGTGCAAGGATGTATATCTGGAGTGAGGTCCTTTGGCAAA 1271
Query 1238 GTGGTGGCACCATTTGTGTTCAGTCCATTGACAGCGTTGTTTCTTTCAAAAAATGCACCG 1297
||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||
Sbjct 1272 GTGGTGGCACCATTTGTGTTCAGTCCATTGACAGCATTGTTTCTTTCGGACAATGCACCG 1331
Query 1298 TTCTATTTCCCTGGATTCAGCCTCCTTTGCATCTCCTTGTCCTCGTTGATCGGTTTCTTT 1357
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 1332 TTCTATTTCCCTGGATTCAGCCTTCTTTGCATCTCCTTGTCGTCGTTGATCGGGTTCTTT 1391
Query 1358 CAGAGTCTACTGATTAAAGATGTCCCTACTCCAC-CATTGAACAAAGCAATCAACAAAAC 1416
||||||||||||||||||||| | |||||||||| | || ||||||||||||||||||||
Sbjct 1392 CAGAGTCTACTGATTAAAGATATTCCTACTCCACAC-TTAAACAAAGCAATCAACAAAAC 1450
Query 1417 CTCAGGCGAGGAAGTGTGATTATATGAACTCATCATGTATAAA--A--GAGAAGAGTGTA 1472
||||| || |||||||||||||||||| |||||||||||||| | ||||||||||||
Sbjct 1451 ATCAGGAGAAGAAGTGTGATTATATGAATTCATCATGTATAAATTAAAGAGAAGAGTGTA 1510
Query 1473 TATATAGCCTTTTAGCTTGTGAC 1495
||||| ||||| |||||||||||
Sbjct 1511 TATATGGCCTTGTAGCTTGTGAC 1533
> Ahg480580 jgi|Araly1|480580|fgenesh2_kg.3__3281__AT2G16980.2
Length=1497
Score = 872 bits (472), Expect = 0.0
Identities = 1096/1390 (79%), Gaps = 71/1390 (5%)
Strand=Plus/Plus
Query 64 GATGGAGG-A--TGGAATTGGAGGGCTGAGACACATGTTGGCGACGGTTTTTCTT-TCTG 119
|||||||| | | || |||||| |||||||||||| || ||||| ||||||| || |
Sbjct 26 GATGGAGGAATTTAGAGTTGGAGAGCTGAGACACATACTGATGACGG-TTTTCTTGTCGG 84
Query 120 CCTTCGCCGGATTCATG-GTAGTACCAGTGATTACTGATGTCACCGTCGCTGCTGTATGC 178
||||||| || | || ||| |||||||| ||||| ||||||||||| || || |||
Sbjct 85 GATTCGCCGAATACTTGCTTAG-GCCAGTGATGACTGACGTCACCGTCGCCGCGGTTTGC 143
Query 179 TCTGGCCCT-GACGACTCATGTTCTCTTGCCGTTTACCTCACTGGTTTTCAACAAGTGGC 237
|| || ||| | || ||||||||||| ||||| || ||||| || | ||||||||| |
Sbjct 144 TCCGG-CCTAAATGATTCATGTTCTCTCGCCGTCTATCTCACCGGAGTACAACAAGTGAC 202
Query 238 AATAGGGA-TGGGGACTATGATAATGATGCCAGTAATTGGGAATCTATCAGACAGATATG 296
|| ||| | ||||| ||||||||||||||||| ||||| |||||||| ||||||||||
Sbjct 203 GGTA-GGACTTGGGACAATGATAATGATGCCAGTGATTGGAAATCTATCCGACAGATATG 261
Query 297 GGATTAAAACAATCCTCACCCTTCCCATGTGTCTCTCCATTGTTCCTCCTGTAATTTTAG 356
| || ||| || | ||||| ||||| ||||| ||||| ||| ||||||| | ||| ||||
Sbjct 262 GAATCAAAGCATTGCTCACTCTTCCAATGTGCCTCTCTATTCTTCCTCCAGCAATATTAG 321
Query 357 GATACAGAAGGGATATAAAATTCTTTTATGTGTTTTATATAAGCAAGATTCTGACCTC-- 414
| ||||||||||||| || |||||||||| |||||||||| ||||| ||| | ||
Sbjct 322 GGTACAGAAGGGATACCAATTTCTTTTATGCATTTTATATAATCAAGACTCT-A-TTCGA 379
Query 415 TATGGTATGTGAAGGCACCGTTGACTGCCTAGCTTATGCATATGTGGC-AGTAAATATTC 473
|||||| || |||||||| ||||||| || ||| |||| |||||||| | |||| |||
Sbjct 380 TATGGTCTGCCAAGGCACCATTGACTGTCTCGCTAATGCTTATGTGGCTA-AAAATGTTC 438
Query 474 ATGGCAGTACAAGAATTTCAGCT-TTTGGTATTTTAGCTGGTATCAAAACAATTGCTGGA 532
|||||| | |||||| ||| | || || |||||||| ||| ||| ||||| | |||
Sbjct 439 ATGGCACAAAAAGAATATCA-ATGTTCGGAATTTTAGCAGGTGTCAGCTCAATTTCCGGA 497
Query 533 CTTTTTGGAACATTAGT-TGCTCGTTTTCTT-CCCATAGCTTTGACTTTTCAGGTTTCTG 590
||| || | || | | ||||||||| || ||||||||| ||||||||||||| | |
Sbjct 498 GTTTGTGCATCACT-CTCAGCTCGTTTT-TTATCCATAGCTTCGACTTTTCAGGTTGCAG 555
Query 591 CTATATCATTTTTCGTTGGCCTAGTGTACATGAGAGTTTTCCTAAAAGAAAAGCTA-AAC 649
|||||||||| ||| ||||||| ||||| |||||||||||||||||||| | | || ||
Sbjct 556 CTATATCATTATTCATTGGCCTGGTGTATATGAGAGTTTTCCTAAAAGAGAGGTTACAA- 614
Query 650 GATGATGAAGATGATGATCTTCATCATGGTACGTA-TCATCAAGAGGATCATGATAGTAT 708
|||||||| || || ||| | | |||||| | | ||||||||||| ||||||| | |
Sbjct 615 GATGATGATGAAGACGATAGTGGTGATGGTA-GAAGTCATCAAGAGGTTCATGAT-G-GT 671
Query 709 TAATA-C-CACA-ATG---TTAGCAGAGCCGATTCTGAACGATAGAC-CCATC-AAAACA 760
|| | | | | ||| |||||||||||| | || || || | || ||| | || |||
Sbjct 672 GAAGATCTGA-AGATGTTATTAGCAGAGCCGGTACT-AA-GAGACACACCAACTAAGACA 728
Query 761 CAAGTCTTTC-ACAAGAAGTATTCTTCATTGAAAGATATGATCAGCTTGATGA-AGACTA 818
|| ||| ||| ||| |||||||| || |||||||||||| |||||||||| | || ||
Sbjct 729 CATGTC-TTCAACACTAAGTATTCGTCTTTGAAAGATATGGTCAGCTTGAT-ATTGAATA 786
Query 819 GCACCATATTCTTTCAAGCATTGGTTGTTACATTCTTCAGC-AGTTTTTCAGATAGTGGA 877
|||||||| || |||||||||||||||||||||| || || | || || || ||||||
Sbjct 787 GCACCATACTCATTCAAGCATTGGTTGTTACATT-TTTTGCTACCTTCTCGGAAAGTGGA 845
Query 878 ATGGAGTCTGCTTTCTTGTACTTTTTGAAAGCACGTTTTGGA-TTTGACAAGAA-GCAGT 935
| || ||||||| || |||| ||||||||||| |||||| || || |||| || | | |
Sbjct 846 AGGGGGTCTGCTCTCATGTATTTTTTGAAAGCCCGTTTT-GAGTTCAACAAAAATG-ACT 903
Query 936 TTGCTGATCTCTTGCTGTTGATTACCATCGTTGGGTCTATCTCTCAATTGTTTGTACTGC 995
||||||| || || |||||| |||||||| |||| || ||||| || ||||| ||||||
Sbjct 904 TTGCTGAGCTATTTCTGTTGGTTACCATCATTGGCTCCATCTCCCAGCTGTTTATACTGC 963
Query 996 CAAGATTTGCATCGGCCATTGGAGAATGCAAGCTTTTATCAACAGGGCTTTTTATGGAAT 1055
||| ||| | || |||||||||||| | ||| | ||||||||||||||| |||||||||
Sbjct 964 CAATATTGGTTTCTGCCATTGGAGAACGTAAGGTGTTATCAACAGGGCTTCTTATGGAAT 1023
Query 1056 TCATAAACATGGCCATTG--TCAGCATTTCTTGGGCACCATGGGTTCCTTAT-CTCACCA 1112
|| | ||| || | ||| |||| || ||||| ||||||||||||||||| | || |
Sbjct 1024 TCTTCAACGCGG-C-TTGTCTCAGTGTTGCTTGGTCACCATGGGTTCCTTATGC-CATGA 1080
Query 1113 -CTGTGTTTGTACCTGGAGCCTTATTTGTGATGCCATCGGTTTGTGGTATTGCCTCGAGA 1171
|| || |||| || |||||| | |||||||||||||||||||||||||||||||| |||
Sbjct 1081 CCT-TGCTTGTGCCCGGAGCCATGTTTGTGATGCCATCGGTTTGTGGTATTGCCTCAAGA 1139
Query 1172 CAAGTTGGA-CCTGGTGAACAGGGAAAAGTTCAAGGATGCATATCTGGAGTGAGGTCCTT 1230
||||||||| || ||||||||||| || || |||||||| ||||| || || ||| | ||
Sbjct 1140 CAAGTTGGATCC-GGTGAACAGGGGAAGGTCCAAGGATGTATATCCGGGGTAAGGGCTTT 1198
Query 1231 TGG-CAAAGTGGTGGCACCATTTGTGT-TCAGTCCATTGACAGCGTTGTTTCTTTCA-AA 1287
|| ||| || ||||| |||||||| | | ||||||||||| ||||||||||| || ||
Sbjct 1199 TGCTCAA-GTTGTGGCTCCATTTGTATAT-AGTCCATTGACGGCGTTGTTTCTCTCCGAA 1256
Query 1288 AAATGCACCGTTCTATTTCCCTGGATTCAGCCTCCTTTGCATCTCCTTGTCCTCGTTGAT 1347
||| ||||| ||||||||||||||||||||| | || |||||| || | || | | ||||
Sbjct 1257 AAA-GCACCATTCTATTTCCCTGGATTCAGCATTCTATGCATCGCCATCTCTTTGATGAT 1315
Query 1348 CGGTTTCTTTCAGAGTCTACTGATTAAAGATG-TCCCTACTCCACCATT-G-AA-CAAAG 1403
||| ||| |||||||||| ||||| |||||| ||| | || | || || | || || ||
Sbjct 1316 CGGATTCCTTCAGAGTCTCCTGATAAAAGATCATCCTT-CTTCGCCCTTAGTAAACATAG 1374
Query 1404 CAATCAACAA 1413
||||||||||
Sbjct 1375 CAATCAACAA 1384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56373562600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5