BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17000.1
Length=2550
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480583 jgi|Araly1|480583|fgenesh2_kg.3__3284__AT2G17000.1 3572 0.0
> Ahg480583 jgi|Araly1|480583|fgenesh2_kg.3__3284__AT2G17000.1
Length=2556
Score = 3572 bits (1934), Expect = 0.0
Identities = 2355/2555 (92%), Gaps = 41/2555 (2%)
Strand=Plus/Plus
Query 1 ATGGAATTCCGCA-AACCCTTTAAGTCTCATAGCTCGTATAAACAGATTATAAGCACCGG 59
||||| || || | |||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGATTTTCG-ACAACCCTTTAATTCTCATAGCTCGTATAAACAGATTATAAGCACGGG 59
Query 60 AGATCAAAACGAGAAGAC--A-AAGAAGAAGAAGAAACTGGCGAATCTTGACGATG--G- 113
|||||||| ||||||||| | ||||||||||||||||| || ||||||||||| |
Sbjct 60 AGATCAAACCGAGAAGACGAAGAAGAAGAAGAAGAAACTCTCGGTTCTTGACGATGAAGA 119
Query 114 CG------------ACATTGCTAAAACTCAGAGCTCTGGGTCTAG-TTTCGATGGAAACA 160
|| ||||||||||||||||||||||||| ||||| ||| |||||| | |
Sbjct 120 CGATCATACTAACCACATTGCTAAAACTCAGAGCTCTGGTTCTAGCTTT-GATGGACATA 178
Query 161 GCTATAAGTTCTGGCAAGACATTGCA-AC-A-GATGA-TT---ATA-C-AAAGAGCGGGA 211
|||| ||||||||| ||||||||||| | | ||| | || | | | ||| |||||||
Sbjct 179 GCTACAAGTTCTGGGAAGACATTGCACCCGATGATCACTTGCGAAACCGAAAAAGCGGGA 238
Query 212 GTTTCGATTTCCCGCAATACCGTGAGGAGATCACACTCGATGTAAACGAAGAAACAGAGG 271
|||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||
Sbjct 239 GTTTCGATTTCCCGCAATTCCGTGAGGAGATCACACTCGATGTGAACGACGAAACAGAGG 298
Query 272 AAACAGAGGATGTCAGCAACAACAACAATTTGTCCGGTTCTAAAGAAACGAGAGTCTTTT 331
||||||||||| | ||||||||||||||| |||| ||||| |||||||||||||||| ||
Sbjct 299 AAACAGAGGATATAAGCAACAACAACAATATGTCTGGTTCGAAAGAAACGAGAGTCTCTT 358
Query 332 TCAAAATAAACAGTTCAGGAACTAATAATATGTCTGGTTCTGTACGTTCTTGTACATCTT 391
||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 359 TCAAAATCAACAGTTCAGGAACCAATAATATGTCTGGTTCGGTACGTTCTTGTACGTCTT 418
Query 392 CGACTTCGTTTTCATCGGCCACAATGCGGTTAAATTTAGAGCAGCAGTTGGAGGATGAAG 451
| ||||| ||||| ||||| ||||||||| | |||||||||||||||||||| || ||||
Sbjct 419 CAACTTCTTTTTCTTCGGCGACAATGCGGATGAATTTAGAGCAGCAGTTGGAAGAGGAAG 478
Query 452 GAGAGGTGGTTGTAAGATGTTCATCGGTGAGGAAAACAGAGCTAGTTTCGAGGGCGAAGG 511
|||| || |||||||||||||||||| |||||||| ||||||| ||||||||||||||||
Sbjct 479 GAGAAGTAGTTGTAAGATGTTCATCGATGAGGAAATCAGAGCTGGTTTCGAGGGCGAAGG 538
Query 512 CGAGATCGAGGTTGATAGATCCGCCACAAGAAGAGGAACAACAATACTCGAGCTGGATCG 571
||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 539 CGAGATCGAGGTTGATAGATCCGCCACAAGAAGAGGAACAACAGTATTCGAGTTGGATCG 598
Query 572 GGACATCGGATCAGTTAAGATCAGGTTTACTTGGGAGACACTCCGATGATATTGAGGAAG 631
|||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 599 GGACATCGGATCAGTTAAGATCCGGTTTACTTGGGAGACAATCAGATGATATTGAGGAAG 658
Query 632 AAGATGATTC-TTCGGCTGAAGAAGATGTTCCAGTGGAATATCGAAAGTTGAAAATGGAT 690
|||||||||| || ||||| |||||||||||| |||||||||| ||||||||||||
Sbjct 659 AAGATGATTCATT-AGCTGAGGAAGATGTTCCACAAGAATATCGAAGGTTGAAAATGGAC 717
Query 691 GCGATAACGTTGCTTCAATGGATGAGCTTAATCGCACTCGTAGTTGCGTTAGTGTTGAGT 750
|| |||||||||||||||||| ||||||| |||||| | |||||||||||||||||||||
Sbjct 718 GCTATAACGTTGCTTCAATGGCTGAGCTTGATCGCATTAGTAGTTGCGTTAGTGTTGAGT 777
Query 751 CTAGGGCTTCATACTTGGAGAAATGCAACTCTATGGAGCCTTCATCTGTGGAAATGGGAA 810
|||| ||||||||| ||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 778 CTAGCGCTTCATACCTGGAGAAATGCAACTATTTGGAGCCTTCATCTGTGGAAATGGGAA 837
Query 811 GTGGTCTTGCTGGTTCTCATCTGTGGGAGGCTGGTTTCGGGATGCGGAATCCGAATCATC 870
||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||| ||
Sbjct 838 GTGGTCTTGCTGGTTCTTATCTGCGGGAGGCTGGTTTCGGGATGCGGGATACGAATTATT 897
Query 871 GTCTTCTTTATCGAAAGAAACTTCCTT-TTGAGGAAACGGGTTCTTTACTTCGTATACGG 929
||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||
Sbjct 898 GTCTTCTTTATCGAAAGAAACTT-CTTGTTGAGGAAACGGGTTCTTTACTTCGTGTACGG 956
Query 930 TGTGAAGACTGCTGTTCAGAACTGTCTCTGGCTCGGCCTCGTGCTTCTCGCTTGGCATTT 989
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 957 TGTGAAGACGGCTGTTCAGAACTGTCTCTGGCTCGGCCTTGTGCTTCTCGCTTGGCATTT 1016
Query 990 CTTGTTTGACAAGAAAGTAGAAAAGGAAACACAAAGCGATGTTCTTCTTCTTATGTCTAA 1049
||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||| ||
Sbjct 1017 CTTGTTTGACAAGAAAGTAGAAAGGGAAACACAGAGCGATGTTCTTCTTCTCGTGTCCAA 1076
Query 1050 AATATTAGTGTGTTTTTTGTTGAGCACGGTCTTATGGCTGATCAAGACACTGGTGGTGAA 1109
||| || |||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 1077 AATCTTGGTGTGTTTCTTGTTAAGCACCGTCTTGTGGCTGATCAAGACACTGGTGGTGAA 1136
Query 1110 AGTTCTAGCCTCTTCGTTCCACGTTAGTACCTACTTTGATCGGATTCAAGAAGCTCTGTT 1169
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1137 AGTTCTAGCTTCTTCGTTCCACGTTAGTACCTATTTTGATCGGATTCAAGAAGCTCTGTT 1196
Query 1170 TCATCATTACTTGATCGAGACGTTATCTGGACCTCCAATGCTTGAGTTAAGCAGGATTGA 1229
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1197 TCATCATTACTTGATTGAGACGTTATCTGGACCTCCAATGCTTGAGTTGAGCAGGATTGA 1256
Query 1230 GGAAGAGGAAGATCGGACGCAAGATGAGAT-CTACAAGATGCAGAAAGGAGGAGCTGATT 1288
|||||||||||||||| ||||||| ||||| || ||||||||||||||||||||| || |
Sbjct 1257 GGAAGAGGAAGATCGGGCGCAAGAAGAGATCCT-CAAGATGCAGAAAGGAGGAGCCGACT 1315
Query 1289 TATCACCTGAACTTTGTTCCGCTGCGTTTCCTCAGGAAAAAAGTGGAAGTACAATGAACA 1348
||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 1316 TATCACCCGAACTTTGTTCCGCTGCGTTTCCTCAGGAAAAAAGCGGGAGTACAATGAATA 1375
Query 1349 TGAAGTTCTCTCCAATCATTCCAAAGACGGGAAGTGATAACGGAATCACAATGGATGATT 1408
||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||
Sbjct 1376 CAAAGTTCTCTCCAATCATCCCAAAGACGGGAACTGATAATGGAATCACAATGGATGATT 1435
Query 1409 T-ACACAAGATGAATCAGAAAAACGTTTCAGCTTGGAACATGAAGAGACTGATGAAGATT 1467
| | |||| ||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 1436 TGA-ACAAAATGAATCAGAAAAACGTTTCAGCATGGAACATGAAAAGGCTGATGAAGATT 1494
Query 1468 GTGAGAAATGTTTCCCTGAGTACGTTGGACGAACAAGCGCTTCAAAACACGTGTGAAGAT 1527
|||||||||||||| |||| ||| |||||||||||||||||||||||||| | |||||||
Sbjct 1495 GTGAGAAATGTTTCGCTGACTACATTGGACGAACAAGCGCTTCAAAACACATCTGAAGAT 1554
Query 1528 GAATCCACTCGACAGATACGGAGCGAAAAAGAAGCTAAAGCAGCTGCAAGGAAGATTTTC 1587
|||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1555 GAATCCACCCGACAGATACGTAGCGAAAAAGAAGCTAAAGCAGCTGCAAGAAAGATTTTC 1614
Query 1588 AAGAACGTAGCTCAACCTGGCACAAAACACATATATCTGGAGGACTTGATGAGATTTTTG 1647
|||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||| ||
Sbjct 1615 AAGAACGTAGCTCAACCTGGTACAAAACACATCTACCTGGAGGACTTAATGAGATTTCTG 1674
Query 1648 CGAGTAGACGAGGCGATGAAGACAATGTGTCTCTTCGAAGGCGCCTTAGTGACCAAAAAG 1707
||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||
Sbjct 1675 CGAGTAGACGAGGCGATGAAGACAATGTGTCTCTTCGAAGGTGCATTACTGACCAAAAAG 1734
Query 1708 ATTACTAAATCAGCCTTGAAGAACTGGCTGGTAAATGCTTTCAGAGAGAGAAGAGCACTT 1767
||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1735 ATTACCAAATCAGCCTTGAAGAACTGGCTGGTCAATGCTTTCAGAGAGCGAAGAGCACTT 1794
Query 1768 GCCTTAACACTCAATGACACCAAAACAGCAGTGAACAAACTCCATCACATGATTAGTTTT 1827
||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1795 GCCTTGACACTCAATGACACCAAAACAGCAGTGAACAAACTACATCATATGATTAGTTTT 1854
Query 1828 CTCACTGCCATTGTCATCATAGTCATATGGCTGATCCTTCTTGAAATCGCTACTTCCAAG 1887
|||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||
Sbjct 1855 CTCACTGCCATTGTCATCATAGTCATATGGTTAATCCTTCTTGAAATCGCCACTTCCAAG 1914
Query 1888 TATCTTTTATTTCTAACTTCACAAGTTGTACTCTTAGCCTTCATGTTTGGGAACTCTCTC 1947
|||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1915 TATCTTCTCTTTTTAACTTCACAAGTTGTACTCTTAGCCTTCATGTTTGGGAACTCTCTC 1974
Query 1948 AAGACCGTCTTCGAGTCAATCATCTTCCTCTTCATCATTCACCCTTACGATGTTGGTGAT 2007
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1975 AAGACCGTCTTCGAGTCCATCATCTTCCTCTTCATCATTCACCCTTACGATGTTGGTGAT 2034
Query 2008 CGGTTACTCATCGACACTGTAGAGATGGTGGTGGAGGAAATGAACATTCTCACAACAGT- 2066
|||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 2035 CGGTTACTAATCGACACTGTAGAGATGGTGGTGGAGGAAATGAACATTTTGACAACAGTG 2094
Query 2067 TTTCTTGAGAGCTGACAATCTGAAGATTGTGTATCCAAATATTCTTCTATGGCAGAAAGC 2126
||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 2095 TTT-TTGAGAGCTGACAATCTGAAGATTGTGTATCCGAATATTCTTCTGTGGCAGAAAGC 2153
Query 2127 GATCCACAATTACAACCGTAGTCCGGATATGGGAGATGAAGTTACATGCTGTGTCCACAT 2186
|| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2154 AATACACAATTACCACCGTAGTCCGGACATGGGAGATGAAGTTACATGCTGTGTCCACAT 2213
Query 2187 TACTACTCCTCCTGAAAAGATTGCTGCAATCAAACAAAGAATATCAAGCTACATTGATAG 2246
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2214 TACTACTCCTCCTGAAAAGATTGCTGCAATCAAACAAAGAATATCGAGCTACATTGATAG 2273
Query 2247 CAAGCCAGAGTATTGGTATCCAAAAGCTGATGTCATTGTAAAGGATGTGGAAGATTTGAA 2306
||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||
Sbjct 2274 CAAGCCAGAGTATTGGTATCCAAAAGCTGATATCATTGTAAAAGATGTGGAAGACTTGAA 2333
Query 2307 CATTGTGAGGATAGCAATATGGCTATGTCATAAAATTAACCATCAAAACATGGGAGAGAG 2366
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 2334 CATTGTGAGGATAGCAATTTGGCTGTGTCATAAAATTAACCATCAAAACATGGGAGAGAG 2393
Query 2367 ATTTACAAGAAGAGCGTTGTTGATCGAGGAAGTAATCAAAATCCTCCTCGAACTCGACAT 2426
||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 2394 ATTCACAAGAAGAGCCTTGTTGGTCGAGGAAGTAATCAAAATCCTCCTCGAACTCGATAT 2453
Query 2427 TCAATACCGGTTTCATCCACTTGACATCAATGTTAAAACCATGCCAACAGTTGTCTCGAG 2486
||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 2454 TCAGTACCGGTTTCATCCACTTGACATTAATGTCAAAACCATGCCAACAGTTGTCTCGAG 2513
Query 2487 CAGAGTTCCACCTGCCTGGTCACAAAACCCTGATT 2521
|||||||||||||| ||||||||||||||||||||
Sbjct 2514 CAGAGTTCCACCTGGCTGGTCACAAAACCCTGATT 2548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96139778380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5