BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17010.1
Length=2404
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480584 jgi|Araly1|480584|fgenesh2_kg.3__3285__AT2G17010.1 3712 0.0
Ahg480583 jgi|Araly1|480583|fgenesh2_kg.3__3284__AT2G17000.1 994 0.0
> Ahg480584 jgi|Araly1|480584|fgenesh2_kg.3__3285__AT2G17010.1
Length=2417
Score = 3712 bits (2010), Expect = 0.0
Identities = 2290/2423 (95%), Gaps = 27/2423 (1%)
Strand=Plus/Plus
Query 1 ATGGATTTCAGAAATTCCTTCAAATCTCATAGCTCATACAAACAAATTCGAAGCCCCGGA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGATTTCAGAAATTCCTTCAAATCTCATAGCTCATACAAACAAATTCGAAGCCCTGGT 60
Query 61 GATCAAAGCGAGCCAAGCCCTGAACATCTGCCAAT--T-CTC---CACGATCACCATCCT 114
||||||||||||||||||||||||||||| || || | | | |||||||||||||||
Sbjct 61 GATCAAAGCGAGCCAAGCCCTGAACATCTTCCTATCCTCCACGATCACGATCACCATCCT 120
Query 115 GATCATTCCGGCATGGTGGTCGATGACCAGAAACCCGACAGCACTCGTTCTAGCCTCGAC 174
||||||||| ||||||| ||||||||| ||||||||| ||||||||||||||||||||
Sbjct 121 GATCATTCCAGCATGGTCATCGATGACCCGAAACCCGAAAGCACTCGTTCTAGCCTCGAT 180
Query 175 GATGGTCGTAACGCGCCTGTAGAACGTGATGCCAGTTACAAATTCTGGCAAGACAACACT 234
|||||||||||||| ||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 181 GATGGTCGTAACGCACCTGTAGAACGTGATGCCAGTTACAAATTTTGGCAAGA-AA-AC- 237
Query 235 ACTGGAACGTCAACGGATCACACGGCGGTGAGAACAAGTGATAAAGATCCAATCGCTATT 294
|||||||| | || ||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 238 ACTGGAACACCCACCGATGACACGGCGGTGAGAACAAGTGATAAAGATCCAATCGCTACT 297
Query 295 AGTCGAAAAGGCGATAGATTAAGCGGTAGTTTCGATTTCGTGCACGGGAAGCTACCGGTT 354
| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 298 ATTCGAAAAGGCGATAGATTAAGCGGTAGTTTCGATTTCGCGCAAGGGAAGCTACCGGTT 357
Query 355 GATGAATCTCCAACGAAAATGGTCGCTGGAGAGCCTGTGAATCGGCAATGGAGAGGTAGA 414
|| || ||||||||||||||||| || ||||| ||| ||||||| |||||||||||||||
Sbjct 358 GAGGATTCTCCAACGAAAATGGTTGCCGGAGAACCTATGAATCGACAATGGAGAGGTAGA 417
Query 415 AATAATGAAGAGATCACACTTGATGTTGATCAAGAAAATGATGATGTAAGTCACCAAACA 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 418 AATAATGAAGAGATCACACTTGATGTTGATCAAGAAAATGATGATGTAAGTCACCAGACA 477
Query 475 ATGCCTACGCCTACATCAACGGCTCGAACCTCGTTTGATGCGTCTAGAGAAATGCGAGTC 534
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 478 ATGCCTACGCCTACATCAACGGCTCGAACCTCGTTTGATGCGTCTAGAGAATTGAGAGTC 537
Query 535 TCTTTTAACGTTCGTAGAGCGGGTGGTGCGTTTGTCGCTGGTTCGGTTCCTTCTTCGTCT 594
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 538 TCTTTTAACGTTCGTAGAGCGGGTGGTACGTTTGTTGCTGGTTCGGTTCCTTCTTCGTCT 597
Query 595 TCCCATTCGTCTTCTTCTTCGTCCGCGACAATGCGGACGAATCAGGATCAGCCGCAACTG 654
|| |||||| || ||||||||||||| |||||||||||||||||||| |||||||||| |
Sbjct 598 TCTCATTCGACTACTTCTTCGTCCGCTACAATGCGGACGAATCAGGAGCAGCCGCAACAG 657
Query 655 CAGGAGGAAGAGGTTGTGAGATGTACTTCGAACATGTCGTTTCAGAGGAAATCAGAGCTT 714
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CAGGAGGATGAGGTTGTTAGATGTACTTCGAACATGTCGTTTCAGAGGAAATCAGAGCTT 717
Query 715 ATATCTAGAGTGAAGACAAGGTCTAGGCTTCAAGATCCGCCACGTGAGGAAGAAACGCCT 774
|| || ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 718 ATTTCGAGAGTTAAGACAAGGTCTAGGCTTCAAGATCCGCCACGAGAGGAGGAAACGCCT 777
Query 775 TACTCGGGTTGGAGATCGGGTCAGTTGAAATCCGGGTTACTTGCG-GATATTGATGAAGA 833
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 778 TACTCGGGTTGGAGATCGGGTCAGTTGAAATCCGGGTTACTTG-GTGATATTGATGAAGA 836
Query 834 GGATGATCCATTAGCGGAAGAAGATGTACCAGATGAGTATAAAAGAGGGAAGCTTGACGC 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GGATGATCCATTAGCGGAAGAAGATGTACCAGATGAGTATAAAAGAGGGAAGCTTGACGC 896
Query 894 CATTACATTGCTCCAGTGGCTTAGCTTAGTCGCTATTATAGCTGCATTAGCGTGTAGTTT 953
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 897 CATTACATTGCTCCAGTGGCTTAGCTTAATCGCTATTATAGCTGCATTGGCGTGTAGTTT 956
Query 954 GTCGATTCAGTCTTGGAAGAAAGTTAGAGTTTGGAATCTTCATC-TATGGAAATGGGAAG 1012
||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||
Sbjct 957 ATCGATTCAGTCTTGGAAGAAAGTTAGAGTTTGGAACCTTCA-CTTATGGAAATGGGAAG 1015
Query 1013 TGTTCTTGTTGGTTCTTATATGTGGGAGGTTGGTTTCGGGTTGGGGAATCCGAATCGTTG 1072
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1016 TGTTTTTGCTGGTTCTTATATGTGGGAGGTTGGTTTCGGGTTGGGGAATCCGAATTGTTG 1075
Query 1073 TCTTCTTCATCGAGAGAAACTTCCTTTTGCGGAAGCGGGTTCTTTACTTCGTTTACGGTG 1132
||||||||||||||||||||||||||||||| || || |||||||||||||| |||||||
Sbjct 1076 TCTTCTTCATCGAGAGAAACTTCCTTTTGCGAAAACGTGTTCTTTACTTCGTATACGGTG 1135
Query 1133 TGCGTAGAGCTGTTCAGAACTGTCTATGGCTAGGCCTAGTCCTTCTCGCTTGGCACTTCT 1192
||||||||||||||||||| || || ||||| |||||||| |||||||||||||| ||||
Sbjct 1136 TGCGTAGAGCTGTTCAGAATTGCCTCTGGCTCGGCCTAGTTCTTCTCGCTTGGCATTTCT 1195
Query 1193 TGTTCGACAAGAAAGTACAGAGGGAGACAAGGAGCAGGATGAATCATAAGAACATCTCTG 1252
||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 1196 TGTTCGATAAGAAAGTACAAAGAGAGACAAGGAGCAGGATGAATCATAAGAACATCTCAG 1255
Query 1253 CTTGGAACATGAAGAGACTAATGAAGATTGTGAGAAATGTTTCTCTGACCACACTGGACG 1312
||||||||||||| || |||||||||||||||||||||||||| || |||||| ||||||
Sbjct 1256 CTTGGAACATGAAAAGGCTAATGAAGATTGTGAGAAATGTTTCCCTCACCACATTGGACG 1315
Query 1313 AACAGATGCTAGAAAGCACATACGAAGATGAATCCACCCGCCAGATACGAAGCGAAAAAG 1372
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 AACAGATGCTGGAAAGCACATACGAAGATGAATCCACCCGCCAGATACGAAGCGAAAAAG 1375
Query 1373 AGGCTAAAGCAGCTGCAAGGAAGATTTTCAAGAACGTTGAGCAACGTGGCGCAAAGTACA 1432
| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 AAGCAAAAGCAGCGGCAAGGAAGATTTTCAAGAACGTTGAGCAACGTGGCGCAAAGTACA 1435
Query 1433 TTTACCTAGAGGATTTGATGAGATTTTTGCGGGAAGACGAGGCGATGAAGACCATGGGCC 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 TTTACCTAGAGGATTTGATGAGATTTTTGCGGGAAGACGAGGCGATGAAGACCATGGGCC 1495
Query 1493 TCTTCGAAGGTGCACCGGAGAATAAAAGGATCAGCAAATCAGCCTTAAAGAACTGGCTGG 1552
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1496 TCTTCGAAGGTGCACCGGAGACCAAAAGGATTAGCAAATCAGCCTTAAAGAACTGGCTGG 1555
Query 1553 TCAATGCTTTCAGAGAGCGACGAGCTCTTGCCCTGACACTCAACGACACCAAGACAGCAG 1612
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1556 TCAATGCTTTCAGAGAGCGACGAGCTCTTGCCCTGACACTCAACGACACCAAGACAGCGG 1615
Query 1613 TGAACAAGCTCCATCACATGATTAATATTGTCACTGCCATAGTCATTGTTGTCATTTGGC 1672
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1616 TGAACAAGCTCCATCACATGATTAATATTGTCACTGCCATTGTCATTGTTGTCATATGGC 1675
Query 1673 TTGTCCTTCTTGAAATTGCTTCCTCCAAGGTACTTCTCTTTGTAAGTTCACAAGTTGTAC 1732
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1676 TTGTCCTTCTTGAAATTGCTTCCTCCAAGGTACTTCTATTTGTAAGTTCACAAGTTGTAC 1735
Query 1733 TCTTGGCCTTCATCTTTGGGAACACTGTCAAGACCGTCTTCGAGTCCATCATCTTCTTAT 1792
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1736 TCTTGGCCTTCATCTTTGGGAACACTGTCAAGACCGTCTTTGAGTCCATCATCTTCTTAT 1795
Query 1793 TCATCGTACACCCTTACGATGTTGGTGATCGGTGTGAGATTGACAGTGTACAGTTGGTGG 1852
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1796 TCATTGTACACCCTTACGATGTTGGTGATCGCTGTGAGATTGACAGTGTACAGTTGGTGG 1855
Query 1853 TGGAGGAGATGAACATACTCACTACCGTGTTCTT-ACGATACGACAATCTGAAGATTATG 1911
||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||
Sbjct 1856 TGGAGGAGATGAACATACTCACTACGGTGTTCTTGA-GATACGACAATCTAAAGATTATG 1914
Query 1912 TATCCGAATAGTCTTTTGTGGCAGAAATCAATCAACAATTACTACCGCAGTCCGGATATG 1971
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1915 TATCCGAATAGTCTTTTGTGGCAAAAATCAATCAACAATTACTACCGCAGTCCGGACATG 1974
Query 1972 GGAGATGCAATCGAGTTCTGTGTCCACATTACTACTCCTCTTGAAAAAATCTCCGTGATC 2031
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1975 GGAGATGCAATCGAGTTCTGTGTCCACATTACTACTCCTCTTGAAAAGATCGCCGTGATC 2034
Query 2032 AAACAGAGAATATCGAACTACATCGACAACAAGCCGGAGTATTGGTACCCACAAGCCAAA 2091
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2035 AAACAGAGAATATCAAACTACATCGACAACAAGCCAGAGTATTGGTACCCACAAGCCAAA 2094
Query 2092 ATCATTGTAAAAGATTTGGAAGATTTGCACATAGTAAGACTAGCAATATGGCCATGTCAC 2151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2095 ATCATTGTAAAAGATTTGGAAGATTTGCACATAGTAAGACTAGCAATATGGCCATGTCAC 2154
Query 2152 AGGATTAATCACCAAGACATGGCTGAAAGATGGACAAGAAGAGCCGTCTTAGTCGAAGAA 2211
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2155 AGGATTAATCACCAAGATATGGCTGAAAGATGGACAAGAAGAGCCGTCTTAGTCGAAGAA 2214
Query 2212 GTGATTAAGATACTCCTCGAGCTCGACATTCAACACCGGTTTTATCCGCTCGATATCAAT 2271
||||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 2215 GTGATTAAGATCCTCCTTGAACTCGACATTCAACACCGGTTTTATCCACTCGATATCAAT 2274
Query 2272 GTCCGAACAATGCCTACCGTTGTCTCTAGCAGAGTTCCACCTGGCTGGTCACAAAACCAA 2331
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2275 GTACGAACAATGCCTACCGTTGTCTCTAGCAGAGTCCCACCTGGCTGGTCACAAAACCAA 2334
Query 2332 CCTGCCTGAAATTTTGATGAACAACACAACAC---TT--T-TC-ATTT-T----GCCTCA 2379
||||||||||||||||||||||||| ||||| || | | |||| | ||||||
Sbjct 2335 CCTGCCTGAAATTTTGATGAACAACCCAACAGAGGTTGATGTTTATTTCTTTTTGCCTCA 2394
Query 2380 AAGGAGTCAACAATTTTGTAACC 2402
|| ||||||||||||||||||||
Sbjct 2395 AACGAGTCAACAATTTTGTAACC 2417
> Ahg480583 jgi|Araly1|480583|fgenesh2_kg.3__3284__AT2G17000.1
Length=2556
Score = 994 bits (538), Expect = 0.0
Identities = 928/1115 (83%), Gaps = 32/1115 (3%)
Strand=Plus/Plus
Query 1231 ATGAATCATAAGAACATCTCTGCTTGGAACATGAAGAGACTAATGAAGATTGTGAGAAAT 1290
|||||||| || ||| | || || ||||||||||| || || ||||||||||||||||||
Sbjct 1444 ATGAATCAGAAAAACGTTTCAGCATGGAACATGAAAAGGCTGATGAAGATTGTGAGAAAT 1503
Query 1291 GTTTCTCTGACCACACTGGACGAAC-AGATGCTAGAAAGCACATAC-GAAGATGAATCCA 1348
||||| ||||| ||| ||||||||| || ||| ||| ||||| | |||||||||||||
Sbjct 1504 GTTTCGCTGACTACATTGGACGAACAAG-CGCTTCAAAACACAT-CTGAAGATGAATCCA 1561
Query 1349 CCCGCCAGATACGAAGCGAAAAAGAGGCTAAAGCAGCTGCAAGGAAGATTTTCAAGAACG 1408
|||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1562 CCCGACAGATACGTAGCGAAAAAGAAGCTAAAGCAGCTGCAAGAAAGATTTTCAAGAACG 1621
Query 1409 TTGAGCAACGTGGCGCAAAGTACATTTACCTAGAGGATTTGATGAGATTTTTGCGGGAAG 1468
| | |||| ||| |||| |||| ||||| ||||| || ||||||||| |||| | ||
Sbjct 1622 TAGCTCAACCTGGTACAAAACACATCTACCTGGAGGACTTAATGAGATTTCTGCGAGTAG 1681
Query 1469 ACGAGGCGATGAAGACCATGGGCCTCTTCGAAGGTGCA--CCGGAGAATAAAAGGATCAG 1526
|||||||||||||||| ||| | ||||||||||||||| | || | |||| ||| |
Sbjct 1682 ACGAGGCGATGAAGACAATGTGTCTCTTCGAAGGTGCATTACTGACCA-AAAA-GATTAC 1739
Query 1527 CAAATCAGCCTTAAAGAACTGGCTGGTCAATGCTTTCAGAGAGCGACGAGCTCTTGCCCT 1586
|||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||| |
Sbjct 1740 CAAATCAGCCTTGAAGAACTGGCTGGTCAATGCTTTCAGAGAGCGAAGAGCACTTGCCTT 1799
Query 1587 GACACTCAACGACACCAAGACAGCAGTGAACAAGCTCCATCACATGATTAATATTGTCAC 1646
||||||||| |||||||| |||||||||||||| || ||||| ||||||| | || ||||
Sbjct 1800 GACACTCAATGACACCAAAACAGCAGTGAACAAACTACATCATATGATTAGTTTTCTCAC 1859
Query 1647 TGCCATAGTCATTGTTGTCATTTGGCTTG-TCCTTCTTGAAATTGCTTCCTCCAAGGTA- 1704
|||||| ||||| | ||||| ||| || ||||||||||||| || | |||||| ||
Sbjct 1860 TGCCATTGTCATCATAGTCATATGG-TTAATCCTTCTTGAAATCGCCACTTCCAAG-TAT 1917
Query 1705 CTTCTCTTTGTAAGTTCACAAGTTGTACTCTTGGCCTTCATCTTTGGGAACACTGTCAAG 1764
||||||||| ||| |||||||||||||||||| |||||||| ||||||||| || |||||
Sbjct 1918 CTTCTCTTTTTAACTTCACAAGTTGTACTCTTAGCCTTCATGTTTGGGAACTCTCTCAAG 1977
Query 1765 ACCGTCTTCGAGTCCATCATCTTCTTATTCATCGTACACCCTTACGATGTTGGTGATCGG 1824
|||||||||||||||||||||||| | |||||| | ||||||||||||||||||||||||
Sbjct 1978 ACCGTCTTCGAGTCCATCATCTTCCTCTTCATCATTCACCCTTACGATGTTGGTGATCGG 2037
Query 1825 TGTGAG-ATT-GACAGTGTACAGTTGGTGGTGGAGGAGATGAACATACTCACTACCGTGT 1882
| | | | | |||| |||| || ||||||||||||| |||||||| | || || ||||
Sbjct 2038 T-T-ACTAATCGACACTGTAGAGATGGTGGTGGAGGAAATGAACATTTTGACAACAGTGT 2095
Query 1883 TCTT-ACGATAC-GACAATCTGAAGATTATGTATCCGAATAGTCTTTTGTGGCAGAAATC 1940
| || | || | ||||||||||||||| |||||||||||| |||| ||||||||||| |
Sbjct 2096 TTTTGA-GAG-CTGACAATCTGAAGATTGTGTATCCGAATATTCTTCTGTGGCAGAAAGC 2153
Query 1941 AAT-CAACAATTACTACCGCAGTCCGGATATGGGAGATGCAA-TCGAGTT-CTGTGTCCA 1997
||| || ||||||| |||| |||||||| |||||||||| || | | | |||||||||
Sbjct 2154 AATACA-CAATTACCACCGTAGTCCGGACATGGGAGATG-AAGTT-ACATGCTGTGTCCA 2210
Query 1998 CATTACTACTCCTCTTGAAAAAATCTCCGTG-A-TCAAACAGAGAATATCGAACTACATC 2055
|||||||||||||| |||||| || | | || | ||||||| |||||||||| ||||||
Sbjct 2211 CATTACTACTCCTCCTGAAAAGAT-TGC-TGCAATCAAACAAAGAATATCGAGCTACATT 2268
Query 2056 GACAACAAGCCGGAGTATTGGTACCCACAAGCCAAAATCATTGTAAAAGATTTGGAAGAT 2115
|| | |||||| ||||||||||| ||| |||| | ||||||||||||||| |||||||
Sbjct 2269 GATAGCAAGCCAGAGTATTGGTATCCAAAAGCTGATATCATTGTAAAAGATGTGGAAGAC 2328
Query 2116 TTGCACATAGTAAG-ACTAGCAATATGGCCATGTCACAGGATTAATCACCAAGACATGGC 2174
||| |||| || || | ||||||| |||| ||||| | ||||| || ||| ||||||
Sbjct 2329 TTGAACATTGTGAGGA-TAGCAATTTGGCTGTGTCATAAAATTAACCATCAAAACATGGG 2387
Query 2175 TGAAAGATGGACAAGAAGAGCCGTCTTAGTCGAAGAAGTGATTAAGATACTCCTCGAGCT 2234
|| |||| |||||||||||| | || ||||| ||||| || || || |||||||| ||
Sbjct 2388 AGAGAGATTCACAAGAAGAGCCTTGTTGGTCGAGGAAGTAATCAAAATCCTCCTCGAACT 2447
Query 2235 CGACATTCAACACCGGTTTTATCCGCTCGATATCAATGTCCGAACAATGCCTACCGTTGT 2294
||| ||||| |||||||| |||| || || || |||||| ||| ||||| || |||||
Sbjct 2448 CGATATTCAGTACCGGTTTCATCCACTTGACATTAATGTCAAAACCATGCCAACAGTTGT 2507
Query 2295 CTCTAGCAGAGTTCCACCTGGCTGGTCACAAAACC 2329
||| |||||||||||||||||||||||||||||||
Sbjct 2508 CTCGAGCAGAGTTCCACCTGGCTGGTCACAAAACC 2542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90578602610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5