BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17020.1
Length=2244
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480585 jgi|Araly1|480585|fgenesh2_kg.3__3286__AT2G17020.1 3498 0.0
> Ahg480585 jgi|Araly1|480585|fgenesh2_kg.3__3286__AT2G17020.1
Length=2233
Score = 3498 bits (1894), Expect = 0.0
Identities = 2129/2243 (95%), Gaps = 13/2243 (1%)
Strand=Plus/Plus
Query 1 GATCGCCACAATTTCCGCAATTTACTTGATCAGGAAAGAGAGACTCCGTTGATGGCTACC 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1 GATCGCCACAATTTCCGCAATTTACTTGATCAGGAAAGAGAGACTCCGACGATGG-T--G 57
Query 61 ACCACCGTCGTATGCGGCGGAGGAGGAGATGTTGAGGGTTGCGATGGCGAGAGAAGCCTG 120
||||||||| |||| |||||||||||||||||| | ||||||||||| || |||||||||
Sbjct 58 ACCACCGTCTTATGTGGCGGAGGAGGAGATGTTAACGGTTGCGATGGAGATAGAAGCCTG 117
Query 121 GATCTGTTACCGGCGGCTCTCTTGGAGACTATTATGACGAAACTCGATGTTGCGTCTCTC 180
|||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 118 GATCTGTTACCGGCGGCTCTCTTGGAGACTATAATGACGAAACTCGACGTAGCGTCTCTC 177
Query 181 TGCTCGTTGGCTTCTACTTGCAAAACACTTAAGAGCTGTGTCACTCGTGTTCTCACCTTC 240
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 178 TGCTCGTTGGCTTCTACTTGCAAAACACTTAAGAGCTGTGTTACTCGTGTCCTCACCTTC 237
Query 241 ACTCCCAACTTCCACATCTTCAATGTTTCATTGTCAATGGAAACTGTTAGACCATTGTTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 ACTCCCAACTTCCACATCTTCAATGTTTCATTGTCAATGGAAACTGTTAGACCATTGTTG 297
Query 301 TTTCCGAATCAACAACTTTCTAGTCTCAAGCTTGATTGTGGAAGGCTTGGTAATTCAGCT 360
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 298 TTTCCGAATCAACAACTCTCAAGTCTCAAGCTTGATTGTGGAAGACTTGGTAATTCAGCT 357
Query 361 ATTGATATATTGGTACGTCCTTCTTTGAGGGAGATTTCTCTTCACAATTGTCGGGATTTC 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 358 ATTGATATATTGGTACGTCCTTCTCTGAGGGAGATTTCTCTTCACAATTGTCGGGATTTC 417
Query 421 AGCGGAGATCTCATCTCCGAAATTGGTAGGAAATGCAAGGATTTGAGGCTCCTATGTTTG 480
||||| ||||| ||||| ||||| || |||| ||||||||||||||||||||||||||||
Sbjct 418 AGCGGCGATCTAATCTCTGAAATCGGGAGGAGATGCAAGGATTTGAGGCTCCTATGTTTG 477
Query 481 GGTTCAGTAGCAGAGAAAGTTGGTCGAAGTATTAGCCGTTGTGCTTTGGAGGATTTACTT 540
|||||||| || ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 478 GGTTCAGTGGCGGAGAAAGTTGGTCGAAGTATTAGCCGTTGTGCTTTCGAAGATTTACTA 537
Query 541 AATGGTTGCTCCCATTTAGAGGTCTTAGCACTCATGTTTGACCTCTCATTGTATCTGCGT 600
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AACGGTTGCTCCCATTTAGAGGTCTTAGCACTCATGTTTGACCTCTCATTGTATCTGCGT 597
Query 601 CCTGGTGATGGTCGCATTTTTGGATTGGTATCTGATAGATTGACTCATCTGGAGCTAGGA 660
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 598 CCTGGTGATGGTCGCATTTTTGGATTGGTATCTGATAAATTGACTCATCTGGAGCTAGGA 657
Query 661 CACATCACGTCAAGGATGATGACTCAGCTACTCACATCAACTGAAATCTCGGGGCAAGAC 720
|||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 658 CACATCTCGTCAAGGATGATGACTCAACTACTTACATCAACTGAAATCTCGGGGCAAGAC 717
Query 721 AGCAACCGAGTTACTACATCTACTGTGCTACAAAATGTCCAGCGGTTGCGCCTCTCAGTG 780
|||| ||| ||||| | ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 718 AGCAGCCGGGTTAC-A--TCTACTGTGCTACAAAATGTCCAGCAGTTGCGCCTCTCAGTG 774
Query 781 GATTGTATTACTGATGCTGTGGTTAAGGCGATATCGAAATCTCTTCCATCTTTGATAGAT 840
||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct 775 GATTGTATTACTGATGCTGTGGTTAAGGCGATATCGAAATCTCTTACGTCGTTGATAGAT 834
Query 841 TTGGACATAAGAGACGCGCCTCTTGAGGATCCAAGACAAGTATCAGACCTCACGGATTTT 900
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 835 TTGGACATAAGAGACGCGCCTCTTGAGGATCCAAGGCAACTATCAGACCTCACGGATTTT 894
Query 901 GGGCTTCATGAGATCAATCAGAATGGTAAGCTGAAGCACCTGTCTCTAATCCGTAGCCAG 960
|||||||||||||||||||| || |||| |||||||||||| |||||||||||||| |||
Sbjct 895 GGGCTTCATGAGATCAATCAAAACGGTAGGCTGAAGCACCTCTCTCTAATCCGTAGTCAG 954
Query 961 GAGTTTCACCCTACTTACTTCCGGCGAGTTAGTGATCAAGGAATGCTTTTTCTTGCTGAC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GAGTTTCACCCTACTTACTTCCGGCGAGTTAGTGATCAAGGAATGCTTTTTCTTGCTGAC 1014
Query 1021 AAATGCTTGGGAATGGAAACCATTTGTCTTGGTGGCTTTTGTCGGGTAACAGATGCTGGT 1080
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 AAATGCTTGGGCATGGAAAGCATTTGTCTTGGTGGCTTTTGTCGGGTAACAGATGCTGGT 1074
Query 1081 TTCAAGACTATTCTTCACTCTTGCGCTAGCCTCTCCAAGTTTAGTATATATCATGGACCT 1140
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1075 TTCAAGACTATTCTTCACTCTTGCGCTAGTCTCTCCAAGTTTAGCATATATCATGGACCT 1134
Query 1141 AAATTGACGGATCTTGTCTTCCATGACATCTTAGCAACTACTCTT-TCGCTTAGTCATGT 1199
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1135 AAATTGACGGATCTTGTCTTCCATGACATCTTAGCAACTACT-TTATCGCTTAGTCATGT 1193
Query 1200 TAGCTTAAGAAGGTGCCATCTTCTTACTGACCACGCAATTCAAAAGCTGGCATCAAGTCT 1259
| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1194 TTGCTTAAGAAGGTGCCATCTTCTTACGGACCACGCAATTCAAAAGCTGGCGTCAAGTCT 1253
Query 1260 CAAGCTGGAGAATCTTGACCTCAGAGGGTGCAGAAACCTGAGGGATGAAACCTTGACAGC 1319
||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||
Sbjct 1254 CAAGCTGGAGAATCTTGACCTCAGAGGGTGCAGAAACCTGAGGGATGGAACCTTAAAAGC 1313
Query 1320 TGTATCTCATCTGCCAAAACTGAAGGTTTTACTTCTTGATGGCGCTGATATTAGCGACAC 1379
||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1314 TGTGTCTCATCTGCCAAAACTGAAGGTTTTACTTCTTGATGGCACCGATATTAGCGACAC 1373
Query 1380 AGGGCTTTCGTACCTAAAAGAGGGAGTTTTGGACTCCCTAGTTTCTTTATCTGTCAGAGG 1439
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 AGGGCTTTCTTACCTAAAAGAGGGAGTTTTGGACTCCCTAGTTTCTTTATCTGTCAGAGG 1433
Query 1440 GTGCAGAAATTTAACCGATAAGTTCATGTCTACCTTATTTGACGGATCCTCAAAACTGGC 1499
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 GTGCAGAAATTTAACAGATAAGTTCATGTCTACCTTATTTGACGGATCCTCAAAACTGGT 1493
Query 1500 GTTGCGGGAACTCGACTTGTCTAATCTTCCTAATCTAACGGATGCTGCCATTTTTGCTCT 1559
| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1494 GCTGCGTGAACTCGACTTGTCTAATCTTCCTAATTTAACGGATGCTGCCATTTTTGCTCT 1553
Query 1560 AGCAAAATCTGGAGCCCCAATCACAAAACTGCAACTAAGAGAATGTAGACTCATAGGTGA 1619
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1554 AGCAAAATCTGGAGCCCCAATCACAAAACTGCAACTAAGAGAGTGTAGACTCATAGGGGA 1613
Query 1620 TGCCTCAGTCATGGCTCTTGCATCCACCCGGGTTTACGAAGACGAATGTCCTGGAAGTAG 1679
|||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 1614 TGCCTCAGTCATGGCTCTTGCATCTACACGGGTTTATGAAGACGAATGTCCTGGAAGTAG 1673
Query 1680 CCTGTGCTTGTTGGATCTTTACGACTGTGGTGGCATCACGCAACTCTCATTCAAATGGCT 1739
| |||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1674 CTTGTGTTTGTTGGATCTTTACGACTGTGGAGGCATCACACAACTCTCATTCAAATGGCT 1733
Query 1740 AAAGAAACCGTTTTTCCCGAGGCTTAAATGGTTAGGGATCACAGGAAGTGTAAACAGAGA 1799
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1734 AAAGAAACCATTTTTCCCGAGGCTTAAATGGTTAGGAATCACAGGAAGTGTAAACAGAGA 1793
Query 1800 TATCGTAGATGCTTTGGCAAGGAGACGACCACATTTGCAGGTCTCTTGCCGTGGAGAAGA 1859
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1794 TATCGTAGATGCTTTGGCAAGGAGACGACCACATTTACAGGTCTCATGCCGTGGAGAAGA 1853
Query 1860 GCTTGGAAATGATGGGGAAGACGACTGGGACTCTGCAGACATACACCAACACATAGAAGC 1919
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1854 GCTGGGGAATGATGGGGAAGACGACTGGGACTCTGCAGACATACACCAACACATAGAAGC 1913
Query 1920 ACAAGAAGATGAGCTTGAACAGTGGATTCTTGGAGACGAAGGTGATGTTGAAATGGAGGA 1979
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1914 ACAAGAAGATGAGCTTGAACAGTGGATTCTTGGAGATGAAGGTGATGTTGAAATGGAGGA 1973
Query 1980 TGCAGAAGACGAGAGTGAAGAAGACGCAAGTGAAGAAGACTGATAATTCTGAAGCTATTT 2039
|||||||| |||||||||||||||||||||||||||||||||||| |||||| |||| |
Sbjct 1974 CGCAGAAGATGAGAGTGAAGAAGACGCAAGTGAAGAAGACTGATAAATCTGAAACTATAT 2033
Query 2040 GGGTAAATACCAATTCTCGTCATCTTTACTTGAGGTTTTAATTCTTTTGATGTTCt-ttt 2098
||||||| |||||||||| | |||||||||| ||||||||||| |||| ||||||| |||
Sbjct 2034 GGGTAAACACCAATTCTCTTAATCTTTACTTTAGGTTTTAATTTTTTTTATGTTCTCTTT 2093
Query 2099 tttCTTTCTTAGTTCTTATGgttattgttgttattagtgttgt-gttgttgttgttggtg 2157
||| |||||||| |||| |||||||||||||| ||||| | ||||||||||||||||
Sbjct 2094 TTTTTTTCTTAGCTCTTGTGGTTATTGTTGTTG---GTGTTATTGTTGTTGTTGTTGGTG 2150
Query 2158 atgttgttgttCTAATCATCTCTTGTTTCTTTAACTCTGGTCTTGATTATTTGAATAAAG 2217
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 2151 ATGTTGTTGTTCTAATCATCTCATGTTTCTTTAACTTTGGTCTTGATTATTTGAATAAAG 2210
Query 2218 GATATCTAGAGATTGTGTTGTGT 2240
||||||||||||||||| |||||
Sbjct 2211 GATATCTAGAGATTGTGATGTGT 2233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84484163410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5