BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17030.1
Length=1511
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480586 jgi|Araly1|480586|fgenesh2_kg.3__3287__AT2G17030.1 1886 0.0
Ahg480589 jgi|Araly1|480589|fgenesh2_kg.3__3290__AT2G17036.1 477 1e-133
> Ahg480586 jgi|Araly1|480586|fgenesh2_kg.3__3287__AT2G17030.1
Length=1424
Score = 1886 bits (1021), Expect = 0.0
Identities = 1166/1236 (94%), Gaps = 9/1236 (1%)
Strand=Plus/Plus
Query 4 CAATGGTGGATTGGTCTACACTACCGAAGGATCTTTTAGACCTAATTTCAAAATCTCTAG 63
|||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 1 CAATGGTGGATTGGTCTACACTCCCGAAGGATCTCTTAGACCTAATCTCAAAATCTCTAG 60
Query 64 AATCTTCCTTCGATCTCATCCAATTCCGTTCCGTTTGTTCTTCATGGCGATCCGCCGCCG 123
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATCTTCCTTCGATCTCGTCCAATTCCGTTCCGTTTGTTCTTCATGGCGATCCGCCGCCG 120
Query 124 AGCCGAAAA-GTCCTCTTCCAACACATCATCTCCCGATCCTCCCCGATAACGGGGGGAGT 182
|||| |||| |||| || ||||||||||| ||||||||||||||||||||||| || ||
Sbjct 121 AGCC-AAAACGTCCGCTCCCAACACATCACCTCCCGATCCTCCCCGATAACGGTGGTAGC 179
Query 183 CTCTTCCCTGATTCCGCCGTTGGTTTCCGTCTCTCGCAGCGGAGTATCTTACTTATCAAG 242
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTCTTCCCTGATTCCGCCGTAGGTTTCCGTCTCTCGCAGCGGAGTATCTTACTTATCAAG 239
Query 243 CCTCATG-A--ACCGTGTATCGAATCGGATTCGTTTGGATGGTTGATCAAAGTCGAGGAA 299
||||||| | ||| | |||| | ||| ||||| |||||||||||||||||||||||
Sbjct 240 CCTCATGAACCACCACACAGCGAAGCAGATCCGTTTAGATGGTTGATCAAAGTCGAGGAA 299
Query 300 GATCTTAATGTTCCTCGTAAGGTGACTCTTTTAGATCCGTTATGTGATACAAGAAACTCA 359
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 300 GATCTTAATGTTCCTCGTAAGGTGACTCTTTTAGACCCGTTATGTGATAAAAGAAACTCA 359
Query 360 ATTCCTGAGAATTTCCCTCGTGTTCTCGATATGTCCAAGTTTAAGGTTCGAGAATTGGGT 419
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 360 ATTCCTGAGAATTTCCCTCATGTTCTCGATATGTCGAAGTTTAAGGTTCGAGAATTGGGT 419
Query 420 CGTGAATTCAAGCTTCATTATTTCAATACTGTTGGTGATATTGTAGAGAGTTTGTATTTG 479
|| || || |||||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 420 CGAGAGTTTAAGCTTCATTATTTCAATACTGTTGGAGATATTGTAGAGAGTTTATACTTG 479
Query 480 GAGAAAGCTGTTGTTAAGTATCTAGATTGTGATGGAGATTATAAATTTGTGTTGCTTACG 539
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 480 GAGAAAGCTGTTGTTAAGTATCTAGATTGTGATGTTGAGTATAAATTTGTGTTGCTTACG 539
Query 540 ATTCATGTTTCGGGGAAGTTAGCTGTGTTTAGGTCTTGGGATCGAGCATGGACTGTGATT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATTCATGTTTCGGGGAAGTTAGCTGTGTTTAGGTCTTGGGATCGAGCATGGACTGTGATT 599
Query 600 AATGACATGCCTTCTCCTTATGATGATGTGATGTTGTTCGATGGACGTTTCTTTGCGGTT 659
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 600 AATGATATGCCTTCTCCTTATGATGATGTGATTTTGTTCGATGGACGTTTCTTTGCGGTT 659
Query 660 GATAACAACGGGAGGACTGTGGTTGTGGATTACAGTTCCTTGAAGTTGACGTTGGTTGCG 719
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 660 GATAACAACGGGAGGACTGTGGTTGTTGATTACAGTTCTTTGAAGTTGACGTTGGTCGCG 719
Query 720 AGTCCTGTGTTTGGTGGTGATAAGAAGTTTTTGATTGAATCTTGTGGTGAAATGTTGCTT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGTCCTGTGTTTGGTGGTGATAAGAAGTTTTTGATTGAATCTTGTGGTGAAATGTTGCTT 779
Query 780 GTTGATATGTACTTGAGCTTAGAGGCAGTGGAAGGGGATCCTGGATTTGTTGAGGAGATT 839
||||||||||| ||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct 780 GTTGATATGTATTTGAGTTTAGAGGCAGTGGAAGGGGATCCTGGATTCGTCGAGGAGATT 839
Query 840 TTCGAGCATCCTGCGTTTTATATGAATGAGAGAACAGTCAAATTTAAAGTGTATAGATTT 899
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 840 TTCGAGCATCCTGCGTTTTATATGAATGAGAGAACGGTTAAATTTAAAGTGTATAGATTT 899
Query 900 GTGGAAAGAGAGGAGAGTTGGGTTGATGTTTACGATCTTGAGGATAAGATGTTGTTCCTT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GTGGAAAGAGAGGAGAGTTGGGTTGATGTTTACGATCTTGAGGATAAGATGTTGTTCCTT 959
Query 960 GGTGATGATTCCACCTTTTCTGCTTCAGCTTCCGATATATTACCT-CTATGTGATGGAAG 1018
|||||||||||||||||||| || |||||||| |||||||||||| | |||||||||||
Sbjct 960 GGTGATGATTCCACCTTTTCCGCCTCAGCTTCTGATATATTACCTACC-TGTGATGGAAG 1018
Query 1019 CTCTGTGTTCTTCAACGGTAATGTCTTCAATGGGGAAGACTTGGGTGCGATGCAAGATCG 1078
||| ||||||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1019 CTCCGTGTTCTTCAATGGTAATGTCTTCAATGGGGAAGACTTGGGCGCAATGCAAGATCG 1078
Query 1079 AGATTTGGGAGTGTTTGACTTCAGGAGTGGGAAAATAGAGCTAGTGCAAAAACTCCCTGA 1138
|||||||||||||||||| ||||||| ||| ||||||||||| |||||||||||||||||
Sbjct 1079 AGATTTGGGAGTGTTTGATTTCAGGACTGGCAAAATAGAGCTGGTGCAAAAACTCCCTGA 1138
Query 1139 ATATGCTAAGCTGTTTTGGCCTCCACCTCCTTGGATAACTTCTCATGCGC-G-TGCTGAA 1196
|||||||||||||||||||||||||||||| ||||| ||||||| |||| | |||||||
Sbjct 1139 ATATGCTAAGCTGTTTTGGCCTCCACCTCCCTGGATTACTTCTCGTGCGTAGATGCTGAA 1198
Query 1197 GATCATATTGGAGAAACATCATCCCAATCTTGAAAA 1232
||||||| ||||||||||||||||||||||||||||
Sbjct 1199 GATCATACTGGAGAAACATCATCCCAATCTTGAAAA 1234
> Ahg480589 jgi|Araly1|480589|fgenesh2_kg.3__3290__AT2G17036.1
Length=1272
Score = 477 bits (258), Expect = 1e-133
Identities = 929/1234 (75%), Gaps = 122/1234 (10%)
Strand=Plus/Plus
Query 10 TGGATTGGTCTACACTACCGAAGGATCTTTTAGACCTAATTTCAAAATCTCTAGAATCTT 69
|||||||| | | ||| |||||||| || |||||||| || || |||| |||||||||||
Sbjct 2 TGGATTGGGCAAAACTCCCGAAGGAACTCTTAGACCTGATCTCCAAATGTCTAGAATCTT 61
Query 70 CCTTCGATCTCATCCAATTCCGTTCCGTTTGTTCTTCATGGCGATCCGCCGCCGAGCCGA 129
|||| ||||||||||| |||||||| || ||||||||||||||||||||||| | |||
Sbjct 62 CCTTTGATCTCATCCAGTTCCGTTCTGTATGTTCTTCATGGCGATCCGCCGCGGGGCC-- 119
Query 130 AAAGTC-CTCTTC-C--AACACATCATCTCCCGATCCTCCCCGATAACGGGGGGAGTCTC 185
|||| | | |||| | ||||| | |||||| || ||||| | | | | | |
Sbjct 120 AAAG-CGC-CTTCTCTGGGCACATAACCTCCCGTTCTTCCCC--T-CCATTGACAAACCC 174
Query 186 TTCCCTGATTCCGCCGTTGGT-TTCCGTC-TCTCGCAGC-GGAGTATCTTACTTATCAAG 242
|| || ||| | | | |||| | || |||| | ||||||| ||||||||||||
Sbjct 175 TT-TCT--CTCCAATG-TAATCCTCCG-CGTCGCGCA-CGGGAGTATTTTACTTATCAAG 228
Query 243 CCTCATGAACCGTGTAT-CGAATCGGATTC-GTTTGGATGG-TTGATCAAAGTCGAGGAA 299
|||||||||||| | || ||| |||| || |||||||||| ||| |||| ||| || |
Sbjct 229 CCTCATGAACCGCG-ATGCGAGGCGGA-TCTGTTTGGATGGATTG-TCAAGGTC-TGGGA 284
Query 300 GATCTTA-ATGT-TCCTCGTAAGGTGACTCTT-TTAGATCCG-TTATGTGATACAAGAAA 355
| | || |||| | |||||||| |||| ||| | | | ||| | | || | |||||||
Sbjct 285 TAACATATATGTAT-CTCGTAAGATGACCCTTATCA-AACCGATGA-GTTTTTCAAGAAA 341
Query 356 CTCA-ATTCCT-GAGAATTTCCCTCGTGTTCTCGATATGTCCAAGTTTAAGGTTCGAGAA 413
|| | |||||| | |||||| ||||| ||||||||||||| || |||| |||||| |||
Sbjct 342 CT-ACATTCCTCG-GAATTTACCTCGAATTCTCGATATGTCTAAATTTAGGGTTCGTGAA 399
Query 414 TTGGGTCGTGAATTCAAG--CT-TCAT--T-ATTTCAATACTGTTG---GT-GATA---T 460
||| |||| ||| ||||| || |||| | ||| | | |||| || | || |
Sbjct 400 TTGTGTCGGGAAGTCAAGCTCTATCATCCTGATTAC-A-ACTG-TGACCCTGGACACCCA 456
Query 461 TGTAGAGAGTTTGTATTTGGAGAAAGCTGTTGTTAAGTATCTAGATTGTGATGGAGATTA 520
| |||| ||| | |||| |||| ||||||| ||||| | || || | ||| |
Sbjct 457 CCTTTAGAG-TTGGAGTTGGGGAAAACTGTTGTCAAGTA-C----CTG-GA--G-GATGA 506
Query 521 TAAATTTGTGTTGCTTACGATTCATGTTTCGGGGAAGTTAGCTGTGTTTAGGTCTTGGGA 580
||||| |||||||||||||||| || | | ||||||||||||||||||||||||||
Sbjct 507 CAAATTCGTGTTGCTTACGATTCTTGAATATGAAAAGTTAGCTGTGTTTAGGTCTTGGGA 566
Query 581 TCGAGCATGGACTGTGATTAATGA---CATGCCTTCTCCTTATGATGATGTGATGTTGTT 637
|||||||||||||||||| ||||| |||||||| || || | | ||| | || ||||
Sbjct 567 TCGAGCATGGACTGTGATCAATGATTACATGCCTTTTCGTTGTCAAGATTTAATAATGTT 626
Query 638 CGATGGACGTTTCTTTGCGGTTGA-TAACAACGGGAGGACTGTGGTTGTGGATTACAGTT 696
|||| ||||||||||||| | || || ||| ||||||||||| ||||| |||||| ||
Sbjct 627 CGATAGACGTTTCTTTGCTATCGACTA-CAATGGGAGGACTGTAGTTGTTGATTACTCTT 685
Query 697 CCTTGAAGTTGACGTTGGTTGC-GAGTCCTGTGTTTGG---TGGTGATAAGAAGTTTTTG 752
| || || ||||| |||| || || |||| || |||| |||||| ||||||||||||
Sbjct 686 CGTTCAAATTGACATTGGCCGCTGA-TCCTTTGATTGGCGGTGGTGACAAGAAGTTTTTG 744
Query 753 ATTGAATCTTGTGGTGAAATGTTGCTTGTTGATAT-GTACTTGAGCTTAGAGGCAGTGGA 811
|||| |||||||||||||||||| || || ||||| | | || || ||| ||| |
Sbjct 745 ATTGCATCTTGTGGTGAAATGTTTCTGGTGGATATAG-AGTTTTGC--AGAAACAGACCA 801
Query 812 AG-G-GGATCCTGGATTTGTT-GAGGAGATTTTCGAGCATCCTGCGTTTTATATGA-ATG 867
| | |||||| ||| | | || | ||| | | || | |||| ||||| |
Sbjct 802 AATGAGGATCC-GGAAATCACCGGGG-G-TTT-CTAT--TCGTA--TTTT-TATGAGACC 852
Query 868 AGAGAACAGT--CAAATTTAAAGTGTATAGATTTGTGGAAAGAGAGGAGAGTTGGGTTGA 925
| || |||| |||||||||| | | || ||| |||||||||||| |||| ||||||||
Sbjct 853 ACAGT-CAGTTACAAATTTAAATTCTTTAAATTAGTGGAAAGAGAGAAGAGATGGGTTGA 911
Query 926 TGTTTA-CGATCTTGAGGATAAGATGTTGTTCCTTGGTGATGATTCCACCTTTTCTGCTT 984
|| | | |||||| |||||||||||| |||||||||||||| ||||| ||||| ||||
Sbjct 912 GGTGGAGC-ATCTTGGGGATAAGATGTTTTTCCTTGGTGATGACTCCACATTTTCCGCTT 970
Query 985 CAGCTTCCGATAT-ATTACCTCTATGTG----A--TGGAAGCTCTGTGTTCTTCAACGGT 1037
||||| | ||||| || |||||| |||| | ||||||||| ||||||||| ||
Sbjct 971 CAGCTGCTGATATTAT-ACCTCTCTGTGTGGGAACTGGAAGCTCCGTGTTCTTCTAC--- 1026
Query 1038 AATGTCTTCAATGGGGAAGACTTGGGT-GCGATGCAAGATCGAGATTTGGGAGTGTTTGA 1096
| | | | || |||| |||| | | |||| | |||||| | |||| |||||||||
Sbjct 1027 AC-G-C---A-TGAGGAATCCTTGT-TCGTGATGGATGATCGAAACTTGGCAGTGTTTGA 1079
Query 1097 CT-TCAGGAGTGGGAAAATAGAGCTAGTGCAA-AAACTCCCTGAATATGCTAAGCTGTTT 1154
| |||||||||||||||||||||| || || ||||||||||||||||| ||| |||||
Sbjct 1080 -TATCAGGAGTGGGAAAATAGAGCTGGTA-AACAAACTCCCTGAATATGCCAAGTTGTTT 1137
Query 1155 TGGCCTCCACCTCCTTGGAT-A--ACTTCTCATG 1185
|||||||||||||| ||||| | ||||||||||
Sbjct 1138 TGGCCTCCACCTCCCTGGATTACTACTTCTCATG 1171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56564013825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5