BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17033.2
Length=1969
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480587 jgi|Araly1|480587|fgenesh2_kg.3__3288__AT2G17033.2 2793 0.0
Ahg906528 jgi|Araly1|906528|Al_scaffold_0003_3656 261 1e-68
> Ahg480587 jgi|Araly1|480587|fgenesh2_kg.3__3288__AT2G17033.2
Length=1968
Score = 2793 bits (1512), Expect = 0.0
Identities = 1829/1980 (92%), Gaps = 29/1980 (1%)
Strand=Plus/Plus
Query 7 TTAAAAATGGCGGCTTTGATCCAGACCATCCATGGTGGTGTGGTTGTTACCAGAACCTTG 66
||||||||||||||||||||||||||| ||||||||| | ||||| ||||||||||||||
Sbjct 1 TTAAAAATGGCGGCTTTGATCCAGACCGTCCATGGTGTTCTGGTTTTTACCAGAACCTTG 60
Query 67 ACTCTTGTTTATCCTTCTACCTTTACGTCCAGACACAAAGCTCTGAACCAGATGACAAGT 126
||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||
Sbjct 61 ACTCTTGTTTATCCTTCTACCTTTATGTCCAGACACAAAGCTCTGAACCAAATGATAAGC 120
Query 127 AGCAGTAACAGCGGCTTGCGACGGTTC-CTGTTCACTCCGCCTCAGCGGCTAAGCCAAGG 185
||||||||||| ||||||| ||||||| | |||||||||||||||||||||||||||||
Sbjct 121 AGCAGTAACAGTGGCTTGCAACGGTTCAAT-TTCACTCCGCCTCAGCGGCTAAGCCAAGG 179
Query 186 TATCTGTTACTGGGGAGCAGAGCTAAGCAACAATGTGTCATGGACTTACAAAACGAAAAT 245
||||||||||||||||| |||| |||| |||||||||||| ||||||| ||| ||| |
Sbjct 180 TATCTGTTACTGGGGAGAAGAGTTAAG---CAATGTGTCATGCACTTACAGAACCAAACT 236
Query 246 GGTTGTTCGATCCAAGGCCGGAGCAGTGCCTCTGATGAAGCATGGCGACCGGTTtctctc 305
||| ||||| | |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 237 GGTGGTTCGGTGCAAGGCCGGAGCAGTGCCTCTGATGAAGCAAGGCGACCGGTTTCTCTC 296
Query 306 ctctctctcgtctcCAGCCTTAGCTGGTGATCCGTCAGCGATAAACCGACACATTAAGAA 365
|||||| ||||| ||||| |||||||||||||||||||||| | ||||||||||||||||
Sbjct 297 CTCTCTGTCGTCCCCAGCTTTAGCTGGTGATCCGTCAGCGACACACCGACACATTAAGAA 356
Query 366 GTTTGTGGCTGCTTCACCCAAATCAGTTG-ctctcaatgtcctctctcatctcctctctg 424
||||||||||||||| |||||||||| || |||| ||||||||||||||||||||||| |
Sbjct 357 GTTTGTGGCTGCTTCTCCCAAATCAG-TGACTCTAAATGTCCTCTCTCATCTCCTCTCGG 415
Query 425 atcaaacttcccatcctcatctctccttctttgctctgtcttTGTATTCGGAAATTACTG 484
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 416 ATCAAACTTCCTATCCTCATCTCTCCTTCTTTGCTCTCTCTTTGTATTCGGAAATTACCG 475
Query 485 AAGCGTCGTGGTTTGATTGGAATCCTAAACTCATTGCTGAACTTATTGCTTTGCTCAATA 544
|||| ||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||
Sbjct 476 AAGCATCGTGGTTTGATTGGAATCCTAAACTCATTGCTGAGCTTGTTGCTGTGCTCAATA 535
Query 545 AACAAGAAAGATTTGATGAATCAGAAACGCTACTTTCTACTGCGGTTTCGAGACTGAAGT 604
||||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 536 AACAAGAGAGATTTGATGAATCAGAAACTCTACTTTCTACAGCGGTTTCGAGGCTGAAGT 595
Query 605 CAAATGAAAGAGACTTTACTCTCTTCCTCTGCAATTTGGTTGAATCAAATTCTAAACAAG 664
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CAAATGAACGAGACTTTGCTCTCTTCCTCTGCAATTTGGTTGAATCAAATTCTAAACAAG 655
Query 665 GGTCTATACAAGGTTTCAGTGAAGCAT-CTTTTCGTTTGAGAGAGATAATCCAAAGATCA 723
|||||||||||||||||| |||||||| | |||||||||||||||| ||||||||||||
Sbjct 656 GGTCTATACAAGGTTTCAATGAAGCATGC-TTTCGTTTGAGAGAGAGAATCCAAAGATCG 714
Query 724 TCATCAGTTTATGTCAAAACTCAAGCTTACAAGTCTATGGTTTCTGGATTATGTAACATG 783
|||||| ||||||||||||| ||||||||||||||||||||| |||||||||| ||||||
Sbjct 715 TCATCAATTTATGTCAAAACCCAAGCTTACAAGTCTATGGTTGCTGGATTATGCAACATG 774
Query 784 GACCAGCCTCATGATGCGGAAAGAGTTATCGAGGAGATGAGAATGGAAAAAATAAAGCCG 843
||||| ||||||||||| |||||||||||||||||||||||| ||||||| |||||||||
Sbjct 775 GACCAACCTCATGATGCAGAAAGAGTTATCGAGGAGATGAGAGTGGAAAAGATAAAGCCG 834
Query 844 GGATTGTTTGAATATAAGTCTGTTCTATACGGCTATGGAAGATTAGGATTGTTTGACGAT 903
|||| ||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 835 GGATCGTTTGAACATAAGTCTGTTCTATACGGGTATGGAAGATTGGGATTGTTTGACGAC 894
Query 904 ATGAACAGAGTAGTACACAGAATGGGAACAGAAGGTCACAAAATCGACACAGTTTGTTCA 963
|||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 895 ATGAACAGAGTAGTGCACAGAATGGAAACCGAAGGTCACAAAATCGACACAGTTTGTTCA 954
Query 964 AATATGGTTCTCTCTTCCTATGGAGCTCATGATGCA-TTGCCCCAAATGGGTTCTTGGTT 1022
|||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct 955 AATATGGTTCTCTCTTCCTATGGAGCCCATGATGCACTT-CCCCAAATGGGTTCTTGGTT 1013
Query 1023 ACAGAAGTTGAAGGGTTTTAATGTTCCTTTCTCCATAAGGACGTATAACTCGGTCTTGAA 1082
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 ACAGAAATTGAAGGGTTTTAATGTTCCTTTCTCCATAAGGACGTATAACTCGGTCTTGAA 1073
Query 1083 TTCTTGTCCTACCATCATATCAATGTTGAAAGACTTGGATAGCTGTCCGGTTTCTCTTTC 1142
|||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1074 TTCTTGTCCTACAATCATGTCACTGTTGAAAGACTTGAATAGCTGTCCGGTTTCTCTTTC 1133
Query 1143 TGAACTGCGTACTTTTCTGAATGAGGACGAAGCACTTCTGGTCCATGAATTGACTCAGTC 1202
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1134 TGAACTGCGTACATTTCTGAATGAGGACGAAGCGCTTCTGGTCCATGAATTGACTCAGTC 1193
Query 1203 ATCAGTTTTAGATGAAGCAATTGAGTGGAACGCGGTAGAGGGTAAGTTGGATTTACATGG 1262
| ||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct 1194 AACAGTTTTAGATGAAGCAATTGAGTGGACCCCGGCAGAGGGTAAGTTGGATTTACATGG 1253
Query 1263 TATGCACTTGAGCTCATCGTATTTGATATTGCTGCAATGGATGGATGAGACCAGACTTAG 1322
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1254 TATGCACTTGAGCTCATCGTATTTGATATTGCTGCAATGGATGGATGAGATCAGACTTAG 1313
Query 1323 ATTTAGCGAAGAAAAGTGTGTAATTCCTGCAGAGATTGTAGTTGTTTCTGGATCTGGAAA 1382
|||||| || |||||||||| |||||||| ||||| |||||| |||||||||| |||||
Sbjct 1314 ATTTAGAGACCAAAAGTGTGTGATTCCTGCCGAGATAGTAGTTATTTCTGGATCCGGAAA 1373
Query 1383 GCATAGCAATGTAAGAGGAGAGTCACCGGTGAAAGCGCTGGTTAAAAAGATAATGGTGCG 1442
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1374 GCACAGCAATGTAAGAGGAGAGTCACCGGTAAAAGCGCTGGTTAAAAAGATAATGGTGCG 1433
Query 1443 TACTGGAAGCCCGATGAGAATTGACCGGAAGAATGTTGGTAGTTTTATTGCCAAGGGAAA 1502
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 TACTGGAAGCCCAATGAGAATTGACCGGAAGAATGTTGGTAGTTTTATTGCCAAGGGAAA 1493
Query 1503 AACTGTTAAAGAATGGCTCTGCAAATGAAGATTTATAACTGTATATTTTGATCACAATTT 1562
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1494 AAATGTAAAAGAATGGCTCTGCAAATGAAGATTTATAACTGTATATTTTGATCATTATCT 1553
Query 1563 GCTTAAGAT--TGATCA--GGA-ATAAGTTTTGCTTGGAATCCAAATCAACTCTTGGTGT 1617
||||||||| || | | || || ||||||||| ||||| ||| | |||||||||
Sbjct 1554 GCTTAAGATGGTGTTGATTGGTGATTCGTTTTGCTTAGAATC-AAA-C---TCTTGGTGT 1608
Query 1618 CAAATTTTCCACCAGAACTAATCAGGTGAGTCGAAATTTTCTCTTTACACTCTTAAAATT 1677
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1609 CAAATTTTCCACCAGAACTAATCAGGTGAGTCAAAATTTTCTCTTCACACTCTTAAAATT 1668
Query 1678 ACCTGCGTGGTAGTAAAATTCTGAATAGCTGGTTTTAGAATAAGAGAAATCTGAACAAAA 1737
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1669 ACCTGCGTGGGAGTAAAATTCTGAATAGCTGGTTTTAGAATAAGAGAAATTTGAACAAAA 1728
Query 1738 ATCATTTCAGTTTTCAAGTATGTAT--------GTTAAACCCTAGAGCTCTGTGAAATTT 1789
|| |||||| |||||||||| ||| |||||||||||||| ||||||||||||
Sbjct 1729 ATGATTTCAAATTTCAAGTATATATTAATATATGTTAAACCCTAGAGTTCTGTGAAATTT 1788
Query 1790 TAACAATAGTTTGTTTGTTTCTGTTTCTGGTGTATCTTTAGCTATATTCCATGAAGTTTC 1849
|||||||| |||||||| |||||||||||||||||||||||| |||||||||| |||||
Sbjct 1789 GAACAATAGCTTGTTTGTCTCTGTTTCTGGTGTATCTTTAGCTCTATTCCATGAGGTTTC 1848
Query 1850 TAGTCTTGAATAATGTGTATAGTTTATTTCAAGCAATGGCTCTGGAGCTTTAGTTTGTTT 1909
|||||||||||||| ||| |||||| ||||||||||||||||| |||||| ||||||||
Sbjct 1849 TAGTCTTGAATAATATGTTTAGTTTTTTTCAAGCAATGGCTCTTTAGCTTTTGTTTGTTT 1908
Query 1910 AAAAGTGCATCTGCTCTAGTCCTTTGATTTGGATAGCAAATAAGTGAAAGTTCTTGTCCC 1969
|||| |||| ||||| |||||| |||||||||||| |||||||||||||| |||||||||
Sbjct 1909 AAAATTGCAGCTGCTTTAGTCCCTTGATTTGGATACCAAATAAGTGAAAGGTCTTGTCCC 1968
> Ahg906528 jgi|Araly1|906528|Al_scaffold_0003_3656
Length=171
Score = 261 bits (141), Expect = 1e-68
Identities = 162/172 (94%), Gaps = 1/172 (1%)
Strand=Plus/Plus
Query 1264 ATGCACTTGAGCTCATCGTATTTGATATTGCTGCAATGGATGGATGAGACCAGACTTAGA 1323
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGCACTTGAGCTCATCGTATTTGATATTGCTGCAATGGATGGATGAGATCAGACTTAGA 60
Query 1324 TTTAGCGAAGAAAAGTGTGTAATTCCTGCAGAGATTGTAGTTGTTTCTGGATCTGGAAAG 1383
|||||||||||||||||||| |||||||| ||||| |||||| |||||||||| ||||||
Sbjct 61 TTTAGCGAAGAAAAGTGTGTGATTCCTGCCGAGATAGTAGTTATTTCTGGATCCGGAAAG 120
Query 1384 CATAGCAATGTAAGAGGAGAGTCACCGGTGAAAGCGCTGGTTAAAAAGATAA 1435
|| |||||||||||||||||||||||||| ||| ||||||||||||| ||||
Sbjct 121 CACAGCAATGTAAGAGGAGAGTCACCGGTAAAATCGCTGGTTAAAAA-ATAA 171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74009346035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5