BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17036.1
Length=1287
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480589 jgi|Araly1|480589|fgenesh2_kg.3__3290__AT2G17036.1 1797 0.0
Ahg480586 jgi|Araly1|480586|fgenesh2_kg.3__3287__AT2G17030.1 494 8e-139
> Ahg480589 jgi|Araly1|480589|fgenesh2_kg.3__3290__AT2G17036.1
Length=1272
Score = 1797 bits (973), Expect = 0.0
Identities = 1162/1251 (93%), Gaps = 22/1251 (2%)
Strand=Plus/Plus
Query 1 ATGGATTGGGCAACACTGCCAAAGGATCTCTTAGACCTGATCTCCAAATGTCTAGAATCT 60
||||||||||||| ||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATTGGGCAAAACTCCCGAAGGAACTCTTAGACCTGATCTCCAAATGTCTAGAATCT 60
Query 61 TCCTTTGATCTCATACAGTTCCGTTCTGTATGTTCTTCATGGCGATCTGCCGCGGGGCCA 120
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TCCTTTGATCTCATCCAGTTCCGTTCTGTATGTTCTTCATGGCGATCCGCCGCGGGGCCA 120
Query 121 AAGCGCCTTCTCTGGGCACATAACCTCCCGTTCTTCCCCTCTGAT-GACAAACCCTTTCT 179
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 121 AAGCGCCTTCTCTGGGCACATAACCTCCCGTTCTTCCCCTCC-ATTGACAAACCCTTTCT 179
Query 180 CTCCAATGTAATCCTCCGCGTCGCGCACCAGAGTATTTTACTTATCAAGCCTAATGAACC 239
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 180 CTCCAATGTAATCCTCCGCGTCGCGCACGGGAGTATTTTACTTATCAAGCCTCATGAACC 239
Query 240 GCAATGCGAGGCGGATCTGTTTGGATGGATTGTCAAGGTTTGGGATAACATATATGTATC 299
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 GCGATGCGAGGCGGATCTGTTTGGATGGATTGTCAAGGTCTGGGATAACATATATGTATC 299
Query 300 TCGTAAGATGACCCTTCTCAAACCGTTGAGTTCTTCAAGAAACTACTTTCCTCAGCATTT 359
|||||||||||||||| |||||||| |||||| ||||||||||||| |||||| | ||||
Sbjct 300 TCGTAAGATGACCCTTATCAAACCGATGAGTTTTTCAAGAAACTACATTCCTCGGAATTT 359
Query 360 ACCTCGTATTTTCGATATGTCTAAGTTTACGGTTCGTGAATTGTGTCGGGAAGTCAAGCT 419
|||||| ||| ||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 360 ACCTCGAATTCTCGATATGTCTAAATTTAGGGTTCGTGAATTGTGTCGGGAAGTCAAGCT 419
Query 420 CTATCATCCTGATTACTACTGTGTCCCTGGACACACAGCTTTAGAGTTGGAGTTGGGGAA 479
|||||||||||||||| |||||| |||||||||| || ||||||||||||||||||||||
Sbjct 420 CTATCATCCTGATTACAACTGTGACCCTGGACACCCACCTTTAGAGTTGGAGTTGGGGAA 479
Query 480 AACTGTTGTCAAGTACCTAAATGATGACAAATTCGTGTTGCTTACAATTCTTGAATATGG 539
|||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||
Sbjct 480 AACTGTTGTCAAGTACCTGGAGGATGACAAATTCGTGTTGCTTACGATTCTTGAATATGA 539
Query 540 AAAGTTAGCTGTGTTTAGGTCTTGGGATCGAGAATGGACTGTGATCAATGATTACATACC 599
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 540 AAAGTTAGCTGTGTTTAGGTCTTGGGATCGAGCATGGACTGTGATCAATGATTACATGCC 599
Query 600 TTCTCGTTGTCAAGATTTGATTATGTTCGATGGACGTTTCTTTGCTATCGACTACAATGG 659
|| ||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||
Sbjct 600 TTTTCGTTGTCAAGATTTAATAATGTTCGATAGACGTTTCTTTGCTATCGACTACAATGG 659
Query 660 GAGGACTGTAGTTGTTGACTACTCTTCTTTCAAATTGACATTGGCCGCTAATCCTTTGAT 719
|||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||
Sbjct 660 GAGGACTGTAGTTGTTGATTACTCTTCGTTCAAATTGACATTGGCCGCTGATCCTTTGAT 719
Query 720 TGGCGGCGGTGACAAGAAGTTTCTGATTGAATCTTGTGGTGAAATGTTTCTGGTGGATAT 779
|||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 720 TGGCGGTGGTGACAAGAAGTTTTTGATTGCATCTTGTGGTGAAATGTTTCTGGTGGATAT 779
Query 780 AGAGTTTTGCCTGAAT--GA--AAA--A----CCGGAATTCACAGGGGGTTTCTATTCGT 829
|||||||||| ||| || ||| | |||||| |||| ||||||||||||||||
Sbjct 780 AGAGTTTTGCA-GAAACAGACCAAATGAGGATCCGGAAATCACCGGGGGTTTCTATTCGT 838
Query 830 ATTTTAATGAGACCACGGTCAGTTACAAATTTAAATTCTTTAAATTAGTGGAAAGAGAGA 889
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ATTTTTATGAGACCACAGTCAGTTACAAATTTAAATTCTTTAAATTAGTGGAAAGAGAGA 898
Query 890 AGAGATGGGTTGAGGTTGAGGATCTTGGGGATAAGATGTTTTTCCTTGGTGATGACTCCA 949
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 899 AGAGATGGGTTGAGGTGGAGCATCTTGGGGATAAGATGTTTTTCCTTGGTGATGACTCCA 958
Query 950 CCTTTTCCGCTTCAACTGCTGATATTATACCTCGCTGCGTGGGAACTGGAAGCTTCGTGT 1009
| |||||||||||| |||||||||||||||||| ||| |||||||||||||||| |||||
Sbjct 959 CATTTTCCGCTTCAGCTGCTGATATTATACCTCTCTGTGTGGGAACTGGAAGCTCCGTGT 1018
Query 1010 TCTTCTACACGCATGAGGAATCCTTGGTGGTGATGGATGATCGAAACTTGGGAGTGTTTG 1069
|||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||
Sbjct 1019 TCTTCTACACGCATGAGGAATCCTTGTTCGTGATGGATGATCGAAACTTGGCAGTGTTTG 1078
Query 1070 ATTTCAGGAGTGGGAAAACAGAGCTGGTAAACAAACTCCCTGAATATGCCAAGTTGTTTT 1129
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 ATATCAGGAGTGGGAAAATAGAGCTGGTAAACAAACTCCCTGAATATGCCAAGTTGTTTT 1138
Query 1130 GGCCTCCACCTCCATGGATTACTACTTCTCATGAGGTCAGTGGTTTCCAATCTCTCAACC 1189
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1139 GGCCTCCACCTCCCTGGATTACTACTTCTCATGAGGTCAGTAGTTTCCAATCTCTCAACC 1198
Query 1190 ACCCGAATAGAGTAGTGTTGAAAATTATACTGGAGAAACATCATCACAATC 1240
||| | | | || | ||| || ||||||||||||||||||| |||||
Sbjct 1199 ACC-GC---G--T-GT-T-GAAGATAATACTGGAGAAACATCATCCCAATC 1240
> Ahg480586 jgi|Araly1|480586|fgenesh2_kg.3__3287__AT2G17030.1
Length=1424
Score = 494 bits (267), Expect = 8e-139
Identities = 924/1222 (76%), Gaps = 121/1222 (10%)
Strand=Plus/Plus
Query 2 TGGATTGGGCAACACTGCCAAAGGATCTCTTAGACCTGATCTCCAAATGTCTAGAATCTT 61
|||||||| | ||||| || ||||||||||||||||| ||||| |||| |||||||||||
Sbjct 7 TGGATTGGTCTACACTCCCGAAGGATCTCTTAGACCTAATCTCAAAATCTCTAGAATCTT 66
Query 62 CCTTTGATCTCATACAGTTCCGTTCTGTATGTTCTTCATGGCGATCTGCCGCGGGGCCAA 121
|||| |||||| | || |||||||| || ||||||||||||||||| ||||| | |||||
Sbjct 67 CCTTCGATCTCGTCCAATTCCGTTCCGTTTGTTCTTCATGGCGATCCGCCGCCGAGCCAA 126
Query 122 AGCG-CCTTCTCTGGGCACATAACCTCCCGTTCTTCCCC--T--CTGATGACAAACC-CT 175
| || || ||| ||||| |||||||| || ||||| | | | || | || ||
Sbjct 127 AACGTCC-GCTCCCAACACATCACCTCCCGATCCTCCCCGATAAC-GGTG-GTAGCCTCT 183
Query 176 T-TCT--CTCCAATGTA-ATCCTCCG-CGTCGCGCACCAGAGTATTTTACTTATCAAGCC 230
| || ||| ||| | |||| | || |||| | |||||| ||||||||||||||
Sbjct 184 TCCCTGATTCCGCCGTAGGT-TTCCGTC-TCTCGCAGCGGAGTATCTTACTTATCAAGCC 241
Query 231 TAATGAACC-GCA-A-TGCGAGGCGGATCTGTTTGGATGGATTG-TCAAGGTTTG-GG-A 284
| ||||||| || | |||| || |||| |||| ||||| ||| |||| | | | || |
Sbjct 242 TCATGAACCACCACACAGCGAAGCAGATCCGTTTAGATGG-TTGATCAAAG-TCGAGGAA 299
Query 285 TAACATATATGTAT-CTCGTAAGATGACCCTTCTCA-AACCGTTGA-GTTCTTCAAGAAA 341
| | || |||| | |||||||| |||| ||| | | | ||||| | || | ||||||
Sbjct 300 GATCTTA-ATGT-TCCTCGTAAGGTGACTCTT-TTAGACCCGTT-ATGTGATAAAAGAAA 355
Query 342 CTAC-TTTCCTCAGCATTTACCTCGTATTTTCGATATGTCTAAGTTTACGGTTCGTGAAT 400
|| | ||||| || |||| |||| | || |||||||||| ||||||| |||||| ||||
Sbjct 356 CT-CAATTCCTGAGAATTTCCCTCATGTTCTCGATATGTCGAAGTTTAAGGTTCGAGAAT 414
Query 401 TGTGTCGGGAAG-TCAAGCTCTATCATCCTGA-TT-ACTACTGTGTCCCTGGACACACAG 457
|| |||| | || | ||| || |||| | | || | ||| ||| |||| | | |
Sbjct 415 TGGGTCGAG-AGTTTAAG--CT-TCAT--T-ATTTCAATAC--TGT---TGGAGATATTG 462
Query 458 CTTTAGAG-TTGGAGTTGGGGAAAACTGTTGTCAAGTACCTA-A-----ATGAT--G-AC 507
| |||| || | |||| |||| ||||||| ||||| ||| | ||| | | |
Sbjct 463 -TAGAGAGTTTATACTTGGAGAAAGCTGTTGTTAAGTATCTAGATTGTGATGTTGAGTAT 521
Query 508 AAATTCGTGTTGCTTACAATTCTTGAATATGGAAAGTTAGCTGTGTTTAGGTCTTGGGAT 567
||||| ||||||||||| |||| || | || |||||||||||||||||||||||||||
Sbjct 522 AAATTTGTGTTGCTTACGATTCATGTTTCGGGGAAGTTAGCTGTGTTTAGGTCTTGGGAT 581
Query 568 CGAGAATGGACTGTGATCAATGATTACATACCTTCTCGTTGTCAAGATTTGATTATGTTC 627
|||| |||||||||||| ||||| | || ||||||| || | | ||| ||||| |||||
Sbjct 582 CGAGCATGGACTGTGATTAATGA-T--ATGCCTTCTCCTTATGATGATGTGATTTTGTTC 638
Query 628 GATGGACGTTTCTTTGCTATCGACT-ACAATGGGAGGACTGTAGTTGTTGACTACTCTTC 686
||||||||||||||||| | || | |||| ||||||||||| |||||||| ||| |||
Sbjct 639 GATGGACGTTTCTTTGCGGTTGA-TAACAACGGGAGGACTGTGGTTGTTGATTACAGTTC 697
Query 687 TTTCAAATTGACATTGGCCGCTAATCCTTTGATTGGCGGCGGTGACAAGAAGTTTCTGAT 746
||| || ||||| |||| ||| | |||| || || || ||||| ||||||||| ||||
Sbjct 698 TTTGAAGTTGACGTTGGTCGCGAGTCCTGTG-TT--TGGTGGTGATAAGAAGTTTTTGAT 754
Query 747 TGAATCTTGTGGTGAAATGTTTCTGGTGGATAT--A---GAGTTTTGC--C--TG-AATG 796
||||||||||||||||||||| || || ||||| | |||||| | | || || |
Sbjct 755 TGAATCTTGTGGTGAAATGTTGCTTGTTGATATGTATTTGAGTTTAGAGGCAGTGGAAGG 814
Query 797 AAAAACC-GGAATTCA-C-AGGGGGTTT-CTA---T--T-CGTATT-T-T-AATGAGACC 843
| || ||| ||| | ||| | ||| | | | | ||| || | | |||||||
Sbjct 815 GGAT-CCTGGA-TTCGTCGAGGAGATTTTCGAGCATCCTGCGTTTTATATGAATGAGAGA 872
Query 844 ACGGTCAGTTACAAATTTAAATTCTTTAAATTAGTGGAAAGAGAGAAGAGATGGGTTGAG 903
||||| | | || |||||| | | || ||| |||||||||||| |||| ||||||||
Sbjct 873 ACGGT---T-A-AA-TTTAAAGTGTATAGATTTGTGGAAAGAGAGGAGAGTTGGGTTGAT 926
Query 904 GTTGAGGATCTTGGGGATAAGATGTTTTTCCTTGGTGATGACTCCACCTTTTCCGCTTCA 963
||| | ||||||| |||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 927 GTTTACGATCTTGAGGATAAGATGTTGTTCCTTGGTGATGATTCCACCTTTTCCGCCTCA 986
Query 964 ACTGCTGATATTAT-ACCT-CGCTGCGTGGGAACTGGAAGCTTCGTGTTCTTCTAC---A 1018
|| ||||||| || |||| | ||| || | |||||||| |||||||||| | |
Sbjct 987 GCTTCTGATAT-ATTACCTAC-CTG--TG--A--TGGAAGCTCCGTGTTCTTCAATGGTA 1038
Query 1019 C-G-C---A-TGAGGAATCCTTGGTG-GTGATGGATGATCGAAACTTGGGAGTGTTTGAT 1071
| | | || |||| ||||| | | ||| | |||||| | |||||||||||||||
Sbjct 1039 ATGTCTTCAATGGGGAAGACTTGG-GCGCAATGCAAGATCGAGATTTGGGAGTGTTTGAT 1097
Query 1072 TTCAGGAGTGGGAAAACAGAGCTGGTA-AACAAACTCCCTGAATATGCCAAGTTGTTTTG 1130
||||||| ||| |||| ||||||||| || ||||||||||||||||| ||| |||||||
Sbjct 1098 TTCAGGACTGGCAAAATAGAGCTGGTGCAA-AAACTCCCTGAATATGCTAAGCTGTTTTG 1156
Query 1131 GCCTCCACCTCCATGGATTACT 1152
|||||||||||| |||||||||
Sbjct 1157 GCCTCCACCTCCCTGGATTACT 1178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48111121254
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5