BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17040.1
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480590 jgi|Araly1|480590|fgenesh2_kg.3__3291__AT2G17040.1 1434 0.0
> Ahg480590 jgi|Araly1|480590|fgenesh2_kg.3__3291__AT2G17040.1
Length=989
Score = 1434 bits (776), Expect = 0.0
Identities = 924/993 (93%), Gaps = 20/993 (2%)
Strand=Plus/Plus
Query 1 ATGGGAAAAGATATTGAGCTCCCGGGTTTTAGGTTCCACCCGACTGAGGAAGAGCTTCTT 60
||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1 ATGGGAAAAGAGATTGAGCTCCCGGGTTTTAGGTTCCACCCAACCGAGGAAGAGCTTCTT 60
Query 61 GATTTCTACCTCAAGAACATGGTTTACGGTAAGAGATCGAGTGTCGAAGTCATTGGTTTC 120
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 61 GATTTCTACCTCAAGAACATGGTTTACGGTAAAAGATCGAGTGTTGAAGTCATTGGTTTC 120
Query 121 CTTAACATATACCGTCATGATCCATGGGACTTACCTGGTTTATCGAGAATCGGGGAGAGG 180
|| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCAACATCTATCGTCATGATCCATGGGACTTACCTGGTTTATCGAGAATCGGGGAGAGG 180
Query 181 GAATGGTACTTCTTTGTACCAAGGGAAAGGAAGCATGGGAACGGTGGGAGGCCAAGCAGG 240
|| |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 181 GAGTGGTACTTCTTTGTGCCAAGGGAAAGGAAGCATGGGAATGGTGGGAGGCCGAGCAGG 240
Query 241 ACAACTGAAAAAGGATATTGGAAAGCAACTGGATCCGATCGTAAAATCATAAGCTTGTCT 300
||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 241 ACAACGGAAAAAGGATATTGGAAAGCAACGGGATCGGATCGTAAAATCATAAGCTTGTCT 300
Query 301 GAGCCAAAACGTGTTATAGGGCTCAAGAAGACGCTTGTGTTCTATAGAGGAAGAGCACCA 360
|||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGCCAAAACGTGTGATTGGGCTAAAGAAGACGCTTGTGTTCTATAGAGGAAGAGCACCA 360
Query 361 GGAGGAAGCAAGACTGATTGGGTGATGAACGAGTTTCGGATGCCCGATAATTGCTCCTTA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGAGGAAGCAAGACTGATTGGGTGATGAACGAGTTTCGGATGCCCGATAATTGCTCCTTA 420
Query 421 CCAAAGGATGTTGTGCTTTGTAAGATATATAGAAAAGCTACTTCATTGAAAGTATTGGAG 480
||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 421 CCAAAGGATGTTGTGCTGTGTAAGATATATAGAAAGGCAACTTCATTGAAAGTATTGGAG 480
Query 481 CAAAGGGCAGAGATGGAAGCTAAGATGAATCAAACATGTCCTAACTCTCCTCTTTCGTCT 540
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 481 CAAAGAGCAGAGATGGAAGCTAAGATGAATCAAACATGTCCAAACTCTCCTCTCTCGTCT 540
Query 541 TCCGAGACGATTTCTTTCGTTGGTAAAGAAGAAAACATGATGACTTCGTTCCGTGCTCCT 600
|||||||| || || |||||||| ||||||||||||||||||||||| ||||||| ||||
Sbjct 541 TCCGAGACAATCTCATTCGTTGGAAAAGAAGAAAACATGATGACTTCTTTCCGTGTTCCT 600
Query 601 CAAGTAATAGCTATGGAAGAAGCAAACAAGATCCAAATGCATC-AAGAAAACGCGAAAAC 659
||||| ||||| |||||||| ||||||||||||| || | || ||||||||||||||||
Sbjct 601 CAAGTGATAGCCATGGAAGATGCAAACAAGATCCTAACAC-TCCAAGAAAACGCGAAAAC 659
Query 660 CGAAGAGAAACAAAGAGAAGCAGAGACCAAAGAACCTTCTTCATCACTGAAGCTACCGTT 719
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CGAAGAGAAACAAAGAGAAACAGAGACCAAAGAACCTTCTTCATCACTGAAGCTACCGTT 719
Query 720 TGGAAGTTTACCAGAGCTACAATTACCAAAACCAGGAG-TAGAATGGG-A--CCAGTTGT 775
|||||| |||||||||||||||||||||||| |||||| | ||||||| | ||| ||||
Sbjct 720 TGGAAGCTTACCAGAGCTACAATTACCAAAAGCAGGAGGT-GAATGGGGAGACCAATTGT 778
Query 776 TGAGTATAAGCCCATGGCTCCAGAATCTTACACCAATAGTTAACATAT-A--TTGGTAGG 832
||||||||||||||||||| |||||||||||||||||||||||| ||| | ||||||||
Sbjct 779 TGAGTATAAGCCCATGGCTACAGAATCTTACACCAATAGTTAACCTATTAAATTGGTAGG 838
Query 833 ATATGTAAAGAACAAATACATTTAAA-TATTCTTACTCTC--GTAAAAAACAGAGCTTGT 889
|||||||||||||||||||||| || |||||||||||| | ||||||||||||||||
Sbjct 839 ATATGTAAAGAACAAATACATT-AACCTATTCTTACTCTTAAG-AAAAAACAGAGCTTGT 896
Query 890 ACCAAATAGTATTTACTAAACTTTTATGTATCTTTTGTAATTTTGTAACATAAGAA-AA- 947
||||||||||||||||| ||||| |||||||||||||||| |||||||||||| || ||
Sbjct 897 ACCAAATAGTATTTACTCAACTTATATGTATCTTTTGTAAGTTTGTAACATAATAAGAAA 956
Query 948 TT---TGTAACACTATTTATAGTCATATTTGAC 977
|| ||||||||| ||||||||||||||||||
Sbjct 957 TTACATGTAACACTGTTTATAGTCATATTTGAC 989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36445508652
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5