BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G17050.1

Length=4068
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg915586 jgi|Araly1|915586|Al_scaffold_0008_337                     270    5e-71
  Ahg948479 jgi|Araly1|948479|scaffold_800366.1                       76.8    1e-12


> Ahg915586 jgi|Araly1|915586|Al_scaffold_0008_337
Length=3783

 Score =  270 bits (146),  Expect = 5e-71
 Identities = 389/502 (77%), Gaps = 33/502 (7%)
 Strand=Plus/Plus

Query  1076  CTGAAGATATTGAAGTCATATTTCTAGACATGTCTAACTTGAA-ATTCT-TTGT-CAAAC  1132
             |||| || || |||| ||| ||||| ||||  || ||||| || ||| |  ||| ||  |
Sbjct  1484  CTGACGAGATCGAAGGCATGTTTCTTGACACATCAAACTT-AAGATT-TGATGTGCAGCC  1541

Query  1133  CTGATG-CTTTCAAGAGTATGCAT-AATCTTAGATTTCTGAAGATTTA-TAGTTCTAATC  1189
             ||  || |||| |||| ||||  | || |||||||| || || ||||| | |||| ||||
Sbjct  1542  CT-CTGCCTTT-AAGAATATG-TTGAACCTTAGATTGCTCAAAATTTACT-GTTCCAATC  1597

Query  1190  CTGGAAAG--CATCAGAG-AATTCGCTTT--CGAGAA-GCTCT-T-CAGTCTCTTCCCAA  1241
             || | |||  |||| | | || ||  |||  | | || ||||| | || |||||||| ||
Sbjct  1598  CT-G-AAGTCCATC-GTGTAA-TCAATTTCCCCA-AAGGCTCTCTGCATTCTCTTCCTAA  1652

Query  1242  TGAGCTACGGCTACTCCACTGGGAGGATTATCCTCTACAATCCCTGCCACAACA-TTTTG  1300
             ||||||| | || ||||| |||||| | |||||||| |||||  |||| ||| | |||||
Sbjct  1653  TGAGCTAAGACTCCTCCATTGGGAGAACTATCCTCTGCAATCTTTGCCTCAA-AGTTTTG  1711

Query  1301  ATCCTACGCACCTTGTTGAACTCAACATGCCTTACAGTAAACTTCAAAAACTTTGGGGTG  1360
             |||||| ||||||||| ||| |||||||||| |||||| |||||||||||||||||||||
Sbjct  1712  ATCCTAGGCACCTTGTCGAAATCAACATGCCGTACAGTCAACTTCAAAAACTTTGGGGTG  1771

Query  1361  GAACCAAGAACCTTGAGATGTTGAAGATGGTCAGGCTTAGTCACTCGCAAG-ATCTAGTT  1419
             ||||||||||||| |||||||||| || | |||||||| | || || || | ||||||||
Sbjct  1772  GAACCAAGAACCTGGAGATGTTGAGGACGATCAGGCTTTGCCATTCCCA-GCATCTAGTT  1830

Query  1420  GAAATTGAAGAACTGATAAAATCTAAAAATATTGAAGTAATCGATCTCCAAGGTTGTACA  1479
             || || || || ||  ||||| || ||||| |||| ||||| ||||||||||||||||||
Sbjct  1831  GATATCGATGATCTCTTAAAAGCTCAAAATCTTGAGGTAATTGATCTCCAAGGTTGTACA  1890

Query  1480  AAAATACAGAGTTTTCCAGCTACAAGACA-TCTACAACATCT-CAGAGTTATTAATCTTT  1537
             | | | |||| ||| |||||  || | || | | |  | ||| | ||||| | ||||| |
Sbjct  1891  AGACTGCAGAATTTCCCAGCCGCAGGTCAAT-TGCTGCGTCTAC-GAGTTGTAAATCTCT  1948

Query  1538  CTGGTTGCGTTGAGATCAAAAG  1559
             | |||||| | ||||| |||||
Sbjct  1949  CAGGTTGCATAGAGATTAAAAG  1970


> Ahg948479 jgi|Araly1|948479|scaffold_800366.1
Length=3237

 Score = 76.8 bits (41),  Expect = 1e-12
 Identities = 63/73 (86%), Gaps = 3/73 (4%)
 Strand=Plus/Plus

Query  1773  GAATATTCAAGATCTCCCAACAAACCTGAAAGAGCTATATCTTGCTGGGACCT-CTATAA  1831
             ||| ||||| ||| || || ||||||||||||||||||||||||||||||| | | ||||
Sbjct  1556  GAA-ATTCAGGATTTCTCACCAAACCTGAAAGAGCTATATCTTGCTGGGAC-TGCCATAA  1613

Query  1832  GAGAAGTTCCATC  1844
             ||||| | |||||
Sbjct  1614  GAGAACTGCCATC  1626



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 153790652493


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5