BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17070.1
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931554 jgi|Araly1|931554|scaffold_304011.1 1258 0.0
Ahg931549 jgi|Araly1|931549|scaffold_304006.1 876 0.0
Ahg931555 jgi|Araly1|931555|scaffold_304012.1 856 0.0
Ahg491129 jgi|Araly1|491129|fgenesh2_kg.7__562__AT4G35210.1 276 2e-73
> Ahg931554 jgi|Araly1|931554|scaffold_304011.1
Length=832
Score = 1258 bits (681), Expect = 0.0
Identities = 756/793 (95%), Gaps = 2/793 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGTCTCCTTCCACGTTCGATCTCACAGTTACCCCTCGATACCTCACCCACAAGCC 60
||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 21 ATGGCTGTCTCCTTCCACGTTCGCTCCCACAGTTATCCCTCGATACCTCACCCACAAGCC 80
Query 61 GCTCATGTTGATGAGCAGTTGGCCAGATTAAGATCTTCTGAGGAAACCTCAACATCTTCA 120
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 81 ACTCATGTTGATGAGCAGTTGGCCGGATTAAGATCTTCTGAAGAAACCTCAACATCTTCA 140
Query 121 AGCTCTTCTATCTGTCAAAGACTTGACAACCTTCAAGAAC-TACATGAGTCTCTTGACAA 179
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 141 AGCTCTTCTATCTGTCAAAGACTTGACAACCTTCAAG-ACTTACATGAGTCTCTTGACAA 199
Query 180 GCTTATTCGCCTACCCGTTACACAACAGGCTCTCGGTCAAGAGAAGAACAAGAAAGACGT 239
|||||| |||||||||||||||||||| ||| | ||||||||| |||||||||||| |||
Sbjct 200 GCTTATCCGCCTACCCGTTACACAACACGCTTTAGGTCAAGAGCAGAACAAGAAAGCCGT 259
Query 240 TGAGCAACTTCTTGATGGATCTCTCAAGATATTGGATGTGTGCAACATATCCAAGGATGC 299
|||||| ||||||||||||||||||| ||| ||||||||||||||||| |||||||||||
Sbjct 260 TGAGCAGCTTCTTGATGGATCTCTCAGGATCTTGGATGTGTGCAACATTTCCAAGGATGC 319
Query 300 TTTGTCGCAGATGAAAGAAGGTCTCATGGAGATCCAATCTATTCTAAGAAGAAAGCGCGG 359
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 320 TTTGTCCCAGATGAAAGAAGGTCTCATGGAGATCCAATCGATTCTAAGAAGAAAGCGCGG 379
Query 360 AGATCTATCAGGAGAGGTGAAGAAATACTTAGCCTCAAGAAAGTCCTTCAAGAAGACATT 419
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
Sbjct 380 AGATCTATCAGGAGAGGTCAAGAAATACTTAGCTTCAAGAAAGTCCTTCAAGAAGACAAT 439
Query 420 CCAGAAAGTACAAAAGTCCCTCAAGGCTGCACAAGCAGAAGACAACAAGGACAAATCTTT 479
|||||||||||||||||| ||||||| ||||||||| ||||||||||| |||||||||||
Sbjct 440 CCAGAAAGTACAAAAGTCTCTCAAGGTTGCACAAGCCGAAGACAACAACGACAAATCTTT 499
Query 480 GGCTGTGTTTGGAGAAGCAGAAGCTGTTACAATTGCTATGTTTGATTCTCTCTTTAGCTA 539
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 500 GGCTGTGTTTGGAGAAGCAGAAGCCGTTACAATTGCTCTGTTTGATTCTCTCTTTAGCTA 559
Query 540 CATGTCTGGATCAAAGACTTGTAGCAAATGGTCAGTCGTCTCAAAGCTAATGAACAAGAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 CATGTCTGGATCAAAGACTTGTAGCAAATGGTCAGTCGTCTCAAAGCTAATGAACAAGAA 619
Query 600 GAAAATTACATGTGAAGCACAAGAAAACGAATTCACCAAGGTTGACTCCGAGTTCCAATC 659
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 620 GAAAATTACATGTGAAGCACAAGAAAACGAATTCACTAAGGTTGACTCCGAATTCCAATC 679
Query 660 CGAGAAGACTTTGAAAATGGAGGACGTTCAGATCCTAGAGTCATGCATTCAAGATTTCGA 719
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 680 CGAGAAGACTTTGAAAATGGAGGATGTGCAGATCCTAGAGTCATGCATTCAAGATTTGGA 739
Query 720 AGATGGACTAGAATCATTATCTAAGTCTTTGATCAAATACAGAGTTTCAATTCTTAACAG 779
||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 740 AGATGGACTTGAATCATTATCTAATTCATTGATCAAATACAGAGTTTCAATTCTTAACAG 799
Query 780 CTTTGGCCATTAA 792
|||||||||||||
Sbjct 800 CTTTGGCCATTAA 812
> Ahg931549 jgi|Araly1|931549|scaffold_304006.1
Length=833
Score = 876 bits (474), Expect = 0.0
Identities = 700/806 (87%), Gaps = 28/806 (3%)
Strand=Plus/Plus
Query 1 ATGGCTGTCTCCTTCCACGTTCGATCTCACAGTTACCCCTCGATACCTCACCCACAAGCC 60
||||| ||||| ||||||||||| ||| |||||| ||| || | || || ||||||||||
Sbjct 21 ATGGCAGTCTCTTTCCACGTTCGCTCTAACAGTTTCCCTTCTAGACTTCCCCCACAAGCC 80
Query 61 GCTCATGTTGATGAGCAGTTGGC-CAGATTAAGATCTTCTGAGGAAACCTCAACATCTTC 119
|||||||| |||||||||||||| | ||||||||||||||||||| |||| ||||||||
Sbjct 81 GCTCATGTCGATGAGCAGTTGGCTC-GATTAAGATCTTCTGAGGATGCCTCGACATCTTC 139
Query 120 AAGCTCTTCTATCTGTCAA-AGACTTGACAACCTTCAAGAACTACATGAGTCTCTTGACA 178
||||||| |||||| ||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 140 TAGCTCTTATATCTG-CAATAGACTTGAAAACCTTCAAGAGCTACATGAGTCTCTTGACA 198
Query 179 AGCTTATTCGCCTACCCGTTACACAACAGGCTCTCGGTCAAGAGAAGAACAAGAAAGACG 238
|| ||||||||||||| || |||||||| ||||| ||||||||| |||||||||||| ||
Sbjct 199 AGTTTATTCGCCTACCTGTAACACAACAAGCTCTAGGTCAAGAGCAGAACAAGAAAGCCG 258
Query 239 TTGAGCAACTTCTTGATGGATCTCTCAA-GATATTGGATGTGTGCAACATATCCAAGGAT 297
| ||||||||||||||||||||| | || ||| |||||| |||||||||| |||||||||
Sbjct 259 TCGAGCAACTTCTTGATGGATCT-TTAAGGATCTTGGATTTGTGCAACATTTCCAAGGAT 317
Query 298 GCTTTGTCGCAGATGAAAGAAGGTCTCATGGAGATCCAATCTATTCTAAGAAGAAAGCGC 357
|||||||| ||||||||||| |||||||||||||||||||| |||||| |||||||||||
Sbjct 318 GCTTTGTCACAGATGAAAGAGGGTCTCATGGAGATCCAATCGATTCTACGAAGAAAGCGC 377
Query 358 GGAGATCTATCAGGAGAGGTGAAGAAATACTTAGCCTCAAGAAAG-TCCTTCAAGAAGAC 416
|| || ||| | |||||||| |||||||||||||||||||| ||| ||| | |||||| |
Sbjct 378 GGTGACCTACCGGGAGAGGTCAAGAAATACTTAGCCTCAAG-AAGATCCCTAAAGAAGTC 436
Query 417 ATTCCAGAAA-GT--ACAAAAGTCCCTCAAGGCTGC--ACAAGCA-GAAGACAACAAG-G 469
|||||| ||| || ||| ||| | |||| | | ||||| | |||| | | |
Sbjct 437 ATTCCA-AAAGGTCCTCAAGAGT--TTGAAGG-T-CAAACAAG-ACCAAGAGTGC-GGCG 489
Query 470 ACAAATCTTTGGCTGTGTTTGGAGAAGCAGAAGCTGTTACAATTGCTATGTTTGATTCTC 529
||||||| ||||| ||||||||||||||||||| ||| ||||||||| ||||||||||||
Sbjct 490 ACAAATCCTTGGCAGTGTTTGGAGAAGCAGAAGATGTGACAATTGCTCTGTTTGATTCTC 549
Query 530 TCTTTAGCTACATGTCTGGATCAAAGACTTGTAGCAAATGGTCAGTCGTCTCAAAGCTAA 589
| ||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 550 TGTTTTGCTTCATGTCTGGATCAAAGACTTGTAGCAAATGGTCTGTCGTCTCAAAGCTAA 609
Query 590 TGAACAAGAAGAAAATTACATGTGAAGCACAAGAAAACGAATTCACCAAGG-TTGACTCC 648
|||||||||||||| ||||||||||||| |||| |||||||||||| |||| |||| |||
Sbjct 610 TGAACAAGAAGAAAGTTACATGTGAAGCTCAAGGAAACGAATTCAC-AAGGGTTGATTCC 668
Query 649 GAGTTCCAATCCGAGAAGACTTTGAAAATGGAGGACGTTCAGATCCTAGAGTCATGCATT 708
|| ||||||||||| ||||| ||||| ||||| || ||||||||| |||| |||||||||
Sbjct 669 GAATTCCAATCCGAAAAGACATTGAAGATGGAAGATGTTCAGATCTTAGATTCATGCATT 728
Query 709 CAAGAT-TTCGAAGATGGACTAGAATCAT-TATCTAAGTCTTTGATCAAATACAGAGTTT 766
|||||| || ||||||||||| ||||| | | |||||||||||||||||||||||||| |
Sbjct 729 CAAGATCTT-GAAGATGGACTTGAATC-TCTCTCTAAGTCTTTGATCAAATACAGAGTCT 786
Query 767 CAATTCTTAACAGCTTTGGCCATTAA 792
|||||||||||| ||| ||||| |||
Sbjct 787 CAATTCTTAACATCTTAGGCCACTAA 812
> Ahg931555 jgi|Araly1|931555|scaffold_304012.1
Length=823
Score = 856 bits (463), Expect = 0.0
Identities = 690/798 (86%), Gaps = 21/798 (3%)
Strand=Plus/Plus
Query 1 ATGGCTGTCTCCTTCCACGTTCGATCTCACAG-TTACCCCTCGATACCTCACCCACAAGC 59
||||| ||||| |||||| |||| || |||| || |||||| | | |||||||||||||
Sbjct 21 ATGGCCGTCTCTTTCCACATTCGCTCGAACAGCTT-CCCCTCAAGATCTCACCCACAAGC 79
Query 60 CGCTCATGTTGATGAGCAGTTGGCCAGATTAAGATCTTCTGAGGAAACCTCAACATCTTC 119
|||||||| ||||||||||||||| | || |||||||| ||| || ||||| |||||||
Sbjct 80 TGCTCATGTCGATGAGCAGTTGGCCCGTTTGAGATCTTCCGAGCAAGCCTCATCATCTTC 139
Query 120 AAGCTCTTCTATCTGTCAAAGACTTGACAACCTTCAAGAACTACATGAGTCTCTTGACAA 179
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 140 TAGCTCTTCTATCTGCCAAAGGCTTGACAACCTTCAAGAACTACATGAGTCTCTTGACAA 199
Query 180 GCTTATTCGCCTACCCGTTACACAACAGGCTCTCGGTCAAGAGAAGAACAAGAAAGACGT 239
|||||| | || | | || |||||||||||||| ||||||| |||||||||||| |||
Sbjct 200 GCTTATCCACCGAGCTGTCACACAACAGGCTCTATCTCAAGAGCAGAACAAGAAAGCCGT 259
Query 240 TGAGCAACTTCTTGATGGATCTCTCAAGATATTGGATGTGTGCAACATATCCAAGGATGC 299
||||||||||||||||||||| |||| ||| |||||| |||||||||| |||||||||||
Sbjct 260 TGAGCAACTTCTTGATGGATCCCTCAGGATCTTGGATTTGTGCAACATTTCCAAGGATGC 319
Query 300 TTTGTC-GCAGATGAAAGAAGGTCTCATGGAGATCCAATCTATTCTAAGAAGAAAGCGCG 358
|||||| | |||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 320 TTTGTCAG-AGATGAAAGAGGGTCTCATGGAGATCCAATCAATTCTAAGAAGAAAGCGTG 378
Query 359 GAGATCTATCAGGAGAGGTGAAGAAATACTTAGCCTCAAGAAAGTC-CTTCAAGAAGACA 417
|||||||||| |||||||| |||||||||||| || ||||||| || ||| |||||| ||
Sbjct 379 GAGATCTATCGGGAGAGGTCAAGAAATACTTAACCACAAGAAAATCTCTT-AAGAAGTCA 437
Query 418 TTCCAGAAAGTACAAAAGTCCCTCAAGGCTGCACAAGCAGAAGACAACAAGGACAAATCT 477
|||||||||| || ||||| | |||| | ||||||| ||||| | || || | |
Sbjct 438 TTCCAGAAAGCACTTAAGTCTTTGAAGGTTACACAAGCCGAAGATGA-AA---CA--T-T 490
Query 478 TTGGCTGTGTTTGGAGAAGCAGAAGCTGTTACAATTGCTATGTTTGATTCTCTCTTTAGC 537
|||||| |||||||||||||||||| ||||||||||| ||||||||||||| ||||||
Sbjct 491 --GGCTGTTTTTGGAGAAGCAGAAGCTATTACAATTGCTTTGTTTGATTCTCTATTTAGC 548
Query 538 TACATGTCTGGATCAAAGACTTGTAGCAAATGGTCAGTCGTCTCAAAGCTAATGAACAAG 597
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 549 TACATGTCTGGATCAAAGATTTGTAGCAAATGGTCAGTCGTCTCACAGCTAATGAACAAG 608
Query 598 AAGAAAATTACATGTGAAGCACAAGAAAACGAATTCACCAAGGTTGACTCCGAGT-TCCA 656
|||||| |||||||||||| |||| |||||||||||| || ||||| ||||| | || |
Sbjct 609 AAGAAAGCTACATGTGAAGCGCAAGCAAACGAATTCACGAAAGTTGATTCCGAATGTC-A 667
Query 657 ATCCGAGAAGACTTTGAAAATGGAGGACGTTCAGATCCTAGAGTCATGCATTCAAGAT-T 715
|| ||| ||||| ||||| |||||||| ||||||| |||||||||||||| |||||| |
Sbjct 668 ATACGAAAAGACCTTGAAGATGGAGGATGTTCAGAAACTAGAGTCATGCATACAAGATCT 727
Query 716 TCGAAGATGGACTAGAATCA-TTATCTAAGTCTTTGATCAAATACAGAGTTTCAATTCTT 774
| ||||||||||| |||||| || || ||||| ||||| ||||||||||| ||| |||||
Sbjct 728 T-GAAGATGGACTTGAATCACTT-TCAAAGTCATTGATTAAATACAGAGTCTCATTTCTT 785
Query 775 AACAGCTTTGGCCATTAA 792
|||| ||| |||||||||
Sbjct 786 AACATCTTAGGCCATTAA 803
> Ahg491129 jgi|Araly1|491129|fgenesh2_kg.7__562__AT4G35210.1
Length=739
Score = 276 bits (149), Expect = 2e-73
Identities = 341/428 (80%), Gaps = 35/428 (8%)
Strand=Plus/Plus
Query 7 GTCTCCTTCCACGTTCGATCTCA-CAGTTACCCCTCGATACCTCACCCACAAGCCGCTCA 65
||||||||||| ||||||||| | ||| ||||| || | | ||||| |||||||||||
Sbjct 88 GTCTCCTTCCATGTTCGATCT-AGCAGCTACCCTTCAAGGCAACACCCTCAAGCCGCTCA 146
Query 66 TGTTGATGAGCAGTTGGCCAGATTAAGATCTTCTGAGGAAACCTCAACATCTTCAAGCTC 125
||| |||||||| ||| || |||| ||||||||||| | | || | ||||| | ||
Sbjct 147 TGTCGATGAGCACTTGACCCGATTGAGATCTTCTGA-G--A---CAGCTTCTTC-A--TC 197
Query 126 TTCTATCTGTCAAAGACTTGA-CAACCTTCAAGAACTACATGAGTCTCTTGACAAGCTTA 184
||||||| ||||||||||| | |||||||||||| ||||||| |||||||| ||| | |
Sbjct 198 TTCTATCCGTCAAAGACTT-AGCAACCTTCAAGATTTACATGATTCTCTTGAAAAGATGA 256
Query 185 TTCGCCTACCCGTTACACAA-CAGGCTCTCGGTCAAGAGAAGAACAAGAAAGACGTTGAG 243
||||| || | || || ||| || ||| | | | |||| | ||| |||||
Sbjct 257 TTCGCTTATCTGTCAC-CAACCATGCT-T---T-ATCTCAAGATC-----AGA--TTGAG 303
Query 244 CAA-CTTCTTGATGGATCTC-TCAAGATATTGGATGTGTGCAACATATCCAAGGATGCTT 301
|| ||||||||||||| | |||| || |||||| ||||||| | ||||||||||||
Sbjct 304 -AAGTTTCTTGATGGATC-CATCAAAATCTTGGATTTGTGCAATGTCGCCAAGGATGCTT 361
Query 302 TGTCGCAGATGAAAGAAGGTCTCATGGAGATCCAATCTATTCTAAGAAGAAAGCGCGGAG 361
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 362 TGTCACAGATGAAAGAAGGTCTCATGGAGATCCAATCTATTCTACGAAGAAAGCGTGGAG 421
Query 362 ATCTATCAGGAGAGGTGAAGAAATACTTAGCCTCAAGAAAGTC-CTTCAAGAAGA-CATT 419
||||||| | ||||| |||||||||||||| |||||||||| || |||||| | ||||
Sbjct 422 ATCTATCTGCTGAGGTCAAGAAATACTTAGCTTCAAGAAAGTTTCT-CAAGAA-ATCATT 479
Query 420 CCAGAAAG 427
|| ||||
Sbjct 480 TCAAAAAG 487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29240277339
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5