BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17080.1
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931555 jgi|Araly1|931555|scaffold_304012.1 1171 0.0
Ahg931554 jgi|Araly1|931554|scaffold_304011.1 948 0.0
Ahg931549 jgi|Araly1|931549|scaffold_304006.1 887 0.0
Ahg931551 jgi|Araly1|931551|scaffold_304008.1 339 3e-92
Ahg491129 jgi|Araly1|491129|fgenesh2_kg.7__562__AT4G35210.1 193 2e-48
> Ahg931555 jgi|Araly1|931555|scaffold_304012.1
Length=823
Score = 1171 bits (634), Expect = 0.0
Identities = 742/793 (94%), Gaps = 11/793 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGTCTCCTTCCACGTTCGATCTAACAGCTTCCCCTCAAGATCTCACCCACAAGCT 60
||||| ||||| |||||| |||| || |||||||||||||||||||||||||||||||||
Sbjct 21 ATGGCCGTCTCTTTCCACATTCGCTCGAACAGCTTCCCCTCAAGATCTCACCCACAAGCT 80
Query 61 GCTCATGTGGATGAGCAGTTGGCCCGTTTGAGATCTTCCGAGCAAGCCTCATCATCTTCC 120
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 GCTCATGTCGATGAGCAGTTGGCCCGTTTGAGATCTTCCGAGCAAGCCTCATCATCTTCT 140
Query 121 AGCTCTTCTATCTGCCAAAGGCTTGACAACCTTCAAGAACTACATGAGTCTCTTGACAAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 AGCTCTTCTATCTGCCAAAGGCTTGACAACCTTCAAGAACTACATGAGTCTCTTGACAAG 200
Query 181 CTTAT-CAGCCGACCTGTCACACAACAGGCTCTTTCTCAAGAGCATAACAAGAAAGCCGT 239
||||| || |||| ||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 201 CTTATCCA-CCGAGCTGTCACACAACAGGCTCTATCTCAAGAGCAGAACAAGAAAGCCGT 259
Query 240 TGAACAGCTTCTTGATGGATCCCTCAGGATCTTGGATTTGTGCAACATTTCCAAGGATGC 299
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 TGAGCAACTTCTTGATGGATCCCTCAGGATCTTGGATTTGTGCAACATTTCCAAGGATGC 319
Query 300 TTTGTCAGAGATGAAAGAGGGTCTCATGGAGATCCAATCAATTCTAAGAAGAAAGCGTGG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 TTTGTCAGAGATGAAAGAGGGTCTCATGGAGATCCAATCAATTCTAAGAAGAAAGCGTGG 379
Query 360 TGATCTATCGGAAGAAGTCAAGAAATACTTAACCTCAAGAAAATCTCTTAAGAAGTCATT 419
|||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 380 AGATCTATCGGGAGAGGTCAAGAAATACTTAACCACAAGAAAATCTCTTAAGAAGTCATT 439
Query 420 CCAGAAAGTACAAAAGTCTTTGAAGGTTACACAAGCTGAAGACAACAACGATGACACTTT 479
|||||||| || ||||||||||||||||||||||| ||||| | ||| || |
Sbjct 440 CCAGAAAGCACTTAAGTCTTTGAAGGTTACACAAGCCGAAGATGA-AAC-AT-----T-- 490
Query 480 GGCTGTCTTTGGAGAAGCAGAAGCTATTACACTTTCTCTGTTTGATTCTCTCCTTAGCTA 539
|||||| |||||||||||||||||||||||| || || ||||||||||||| |||||||
Sbjct 491 GGCTGTTTTTGGAGAAGCAGAAGCTATTACAATTGCTTTGTTTGATTCTCTATTTAGCTA 550
Query 540 CATGTCTGGATCAAAGACTTGTAGTAAATGGTCAGTCGTCTCAAAGCTAATGAACAAGAA 599
||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||
Sbjct 551 CATGTCTGGATCAAAGATTTGTAGCAAATGGTCAGTCGTCTCACAGCTAATGAACAAGAA 610
Query 600 GAAAGTTACATGTGAAGCGCAAGAAAACGAATTCACGAAGGTTGATTCCGAATTTCAATC 659
||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| |||||
Sbjct 611 GAAAGCTACATGTGAAGCGCAAGCAAACGAATTCACGAAAGTTGATTCCGAATGTCAATA 670
Query 660 CGAAAAGACCTTGAAGATGGATGATGTTCAGAACCTAGAGTCATGCATTCAAGATCTTGA 719
||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 671 CGAAAAGACCTTGAAGATGGAGGATGTTCAGAAACTAGAGTCATGCATACAAGATCTTGA 730
Query 720 AGATGGACTTGAATCACTTTCAAAGTCATTGATTAAATACAGAGTCTCATTTCTTAACAT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 AGATGGACTTGAATCACTTTCAAAGTCATTGATTAAATACAGAGTCTCATTTCTTAACAT 790
Query 780 CTTAGGCCACTAA 792
||||||||| |||
Sbjct 791 CTTAGGCCATTAA 803
> Ahg931554 jgi|Araly1|931554|scaffold_304011.1
Length=832
Score = 948 bits (513), Expect = 0.0
Identities = 708/801 (88%), Gaps = 18/801 (2%)
Strand=Plus/Plus
Query 1 ATGGCAGTCTCCTTCCACGTTCGATCTAACAGCTT-CCCCTCAAGATCTCACCCACAAGC 59
||||| ||||||||||||||||| || |||| || ||||| | | |||||||||||||
Sbjct 21 ATGGCTGTCTCCTTCCACGTTCGCTCCCACAG-TTATCCCTCGATACCTCACCCACAAGC 79
Query 60 TGCTCATGTGGATGAGCAGTTGGCCCGTTTGAGATCTTCCG-AGCAAGCCTCATCATCTT 118
||||||| ||||||||||||||| | || |||||||| | || || ||||| ||||||
Sbjct 80 CACTCATGTTGATGAGCAGTTGGCCGGATTAAGATCTTCTGAAG-AAACCTCAACATCTT 138
Query 119 CCAGCTCTTCTATCTGCCAAAGGCTTGACAACCTTCAAGAAC-TACATGAGTCTCTTGAC 177
| |||||||||||||| ||||| |||||||||||||||| || |||||||||||||||||
Sbjct 139 CAAGCTCTTCTATCTGTCAAAGACTTGACAACCTTCAAG-ACTTACATGAGTCTCTTGAC 197
Query 178 AAGCTTATCAGCCGACCTGTCACACAACAGGCTCTT-TCTCAAGAGCATAACAAGAAAGC 236
||||||||| ||| ||| || |||||||| ||| || ||||||||| |||||||||||
Sbjct 198 AAGCTTATCCGCCTACCCGTTACACAACACGCT-TTAGGTCAAGAGCAGAACAAGAAAGC 256
Query 237 CGTTGAACAGCTTCTTGATGGATCCCTCAGGATCTTGGATTTGTGCAACATTTCCAAGGA 296
|||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 257 CGTTGAGCAGCTTCTTGATGGATCTCTCAGGATCTTGGATGTGTGCAACATTTCCAAGGA 316
Query 297 TGCTTTGTCAGAGATGAAAGAGGGTCTCATGGAGATCCAATCAATTCTAAGAAGAAAGCG 356
||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 317 TGCTTTGTCCCAGATGAAAGAAGGTCTCATGGAGATCCAATCGATTCTAAGAAGAAAGCG 376
Query 357 TGGTGATCTATC-GGAAGAAGTCAAGAAATACTTAACCTCAAGAAAATCTCTT-AAGAAG 414
|| |||||||| || ||| ||||||||||||||| | |||||||| || ||| ||||||
Sbjct 377 CGGAGATCTATCAGG-AGAGGTCAAGAAATACTTAGCTTCAAGAAAGTC-CTTCAAGAAG 434
Query 415 TCATTCCAGAAAGTACAAAAGTCTTTGAAGGTTACACAAGCTGAAGACAACAACGATGAC 474
|| |||||||||||||||||||| | |||||| ||||||| |||||||||||||| |
Sbjct 435 ACAATCCAGAAAGTACAAAAGTCTCTCAAGGTTGCACAAGCCGAAGACAACAACGA-CAA 493
Query 475 A-CTTTGGCTGTCTTTGGAGAAGCAGAAGCTATTACACTTTCTCTGTTTGATTCTCTCCT 533
| |||||||||| ||||||||||||||||| ||||| || ||||||||||||||||| |
Sbjct 494 ATCTTTGGCTGTGTTTGGAGAAGCAGAAGCCGTTACAATTGCTCTGTTTGATTCTCTCTT 553
Query 534 TAGCTACATGTCTGGATCAAAGACTTGTAGTAAATGGTCAGTCGTCTCAAAGCTAATGAA 593
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 554 TAGCTACATGTCTGGATCAAAGACTTGTAGCAAATGGTCAGTCGTCTCAAAGCTAATGAA 613
Query 594 CAAGAAGAAAGTTACATGTGAAGCGCAAGAAAACGAATTCACGAAGGTTGATTCCGAATT 653
|||||||||| ||||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 614 CAAGAAGAAAATTACATGTGAAGCACAAGAAAACGAATTCACTAAGGTTGACTCCGAATT 673
Query 654 TCAATCCGAAAAGACCTTGAAGATGGATGATGTTCAGAACCTAGAGTCATGCATTCAAGA 713
|||||||| ||||| ||||| ||||| ||||| |||| |||||||||||||||||||||
Sbjct 674 CCAATCCGAGAAGACTTTGAAAATGGAGGATGTGCAGATCCTAGAGTCATGCATTCAAGA 733
Query 714 TCTTG-AAGATGGACTTGAATCACTT-TCAAAGTCATTGATTAAATACAGAGTCTCATTT 771
| ||| ||||||||||||||||| || || || |||||||| ||||||||||| ||| ||
Sbjct 734 T-TTGGAAGATGGACTTGAATCA-TTATCTAATTCATTGATCAAATACAGAGTTTCAATT 791
Query 772 CTTAACATCTTAGGCCACTAA 792
||||||| ||| ||||| |||
Sbjct 792 CTTAACAGCTTTGGCCATTAA 812
> Ahg931549 jgi|Araly1|931549|scaffold_304006.1
Length=833
Score = 887 bits (480), Expect = 0.0
Identities = 696/800 (87%), Gaps = 16/800 (2%)
Strand=Plus/Plus
Query 1 ATGGCAGTCTCCTTCCACGTTCGATCTAACAGCTTCCCCTCAAGATC-TCACCCACAAGC 59
||||||||||| ||||||||||| |||||||| ||||| || ||| | || |||||||||
Sbjct 21 ATGGCAGTCTCTTTCCACGTTCGCTCTAACAGTTTCCCTTCTAGA-CTTCCCCCACAAGC 79
Query 60 TGCTCATGTGGATGAGCAGTTGGCCCGTTTGAGATCTTCCGAGCAAGCCTC-ATCATCTT 118
|||||||| |||||||||||||| || || |||||||| ||| | ||||| | ||||||
Sbjct 80 CGCTCATGTCGATGAGCAGTTGGCTCGATTAAGATCTTCTGAGGATGCCTCGA-CATCTT 138
Query 119 CCAGCTCTTCTATCTGCCAA-AGGCTTGACAACCTTCAAGAACTACATGAGTCTCTTGAC 177
| ||||||| |||||| ||| || ||||| ||||||||||| ||||||||||||||||||
Sbjct 139 CTAGCTCTTATATCTG-CAATAGACTTGAAAACCTTCAAGAGCTACATGAGTCTCTTGAC 197
Query 178 AAGCTTA-TCAGCCGACCTGTCACACAACAGGCTCTTTCTCAAGAGCATAACAAGAAAGC 236
||| ||| || ||| |||||| |||||||| ||||| ||||||||| |||||||||||
Sbjct 198 AAGTTTATTC-GCCTACCTGTAACACAACAAGCTCTAGGTCAAGAGCAGAACAAGAAAGC 256
Query 237 CGTTGAACAGCTTCTTGATGGATCCCTCAGGATCTTGGATTTGTGCAACATTTCCAAGGA 296
||| || || |||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 257 CGTCGAGCAACTTCTTGATGGATCTTTAAGGATCTTGGATTTGTGCAACATTTCCAAGGA 316
Query 297 TGCTTTGTCAGAGATGAAAGAGGGTCTCATGGAGATCCAATCAATTCTAAGAAGAAAGCG 356
|||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 317 TGCTTTGTCACAGATGAAAGAGGGTCTCATGGAGATCCAATCGATTCTACGAAGAAAGCG 376
Query 357 TGGTGATCTATCGGAAGAAGTCAAGAAATACTTAACCTCAAGAAAATCTCTTAAGAAGTC 416
||||| ||| ||| ||| ||||||||||||||| ||||||||| ||| || ||||||||
Sbjct 377 CGGTGACCTACCGGGAGAGGTCAAGAAATACTTAGCCTCAAGAAGATCCCTAAAGAAGTC 436
Query 417 ATTCCAGAAAG-TACAAAAGTCTTTGAAGGTTACACAAG-CTGAAGACAACAACGATGAC 474
|||||| |||| | | ||| ||||||||| | ||||| | |||| | ||| |
Sbjct 437 ATTCCA-AAAGGTCCTCAAGAGTTTGAAGGTCAAACAAGACC-AAGAGTGCGGCGACAA- 493
Query 475 A-CTTTGGCTGTCTTTGGAGAAGCAGAAGCTATTACACTTTCTCTGTTTGATTCTCTCCT 533
| | ||||| || |||||||||||||||| | | ||| || |||||||||||||||| |
Sbjct 494 ATCCTTGGCAGTGTTTGGAGAAGCAGAAGATGTGACAATTGCTCTGTTTGATTCTCTGTT 553
Query 534 TAGCTACATGTCTGGATCAAAGACTTGTAGTAAATGGTCAGTCGTCTCAAAGCTAATGAA 593
| ||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 554 TTGCTTCATGTCTGGATCAAAGACTTGTAGCAAATGGTCTGTCGTCTCAAAGCTAATGAA 613
Query 594 CAAGAAGAAAGTTACATGTGAAGCGCAAGAAAACGAATTCACGAAGG-TTGATTCCGAAT 652
|||||||||||||||||||||||| |||| |||||||||||| |||| ||||||||||||
Sbjct 614 CAAGAAGAAAGTTACATGTGAAGCTCAAGGAAACGAATTCAC-AAGGGTTGATTCCGAAT 672
Query 653 TTCAATCCGAAAAGACCTTGAAGATGGATGATGTTCAGAACCTAGAGTCATGCATTCAAG 712
| |||||||||||||| ||||||||||| |||||||||| | |||| |||||||||||||
Sbjct 673 TCCAATCCGAAAAGACATTGAAGATGGAAGATGTTCAGATCTTAGATTCATGCATTCAAG 732
Query 713 ATCTTGAAGATGGACTTGAATCACTTTCAAAGTCATTGATTAAATACAGAGTCTCATTTC 772
|||||||||||||||||||||| || || ||||| ||||| ||||||||||||||| |||
Sbjct 733 ATCTTGAAGATGGACTTGAATCTCTCTCTAAGTCTTTGATCAAATACAGAGTCTCAATTC 792
Query 773 TTAACATCTTAGGCCACTAA 792
||||||||||||||||||||
Sbjct 793 TTAACATCTTAGGCCACTAA 812
> Ahg931551 jgi|Araly1|931551|scaffold_304008.1
Length=406
Score = 339 bits (183), Expect = 3e-92
Identities = 345/419 (82%), Gaps = 28/419 (7%)
Strand=Plus/Plus
Query 287 TTTCCAAGGATGCTTTGTCAG-AGATGAAAGAGGGTCTCATGGAGATCCAATCAATTCTA 345
||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTCCAAGGATACTTTGTC-GTAGATGAAAGAGGGTCTCATGGAGATCCAATCAATTCTT 59
Query 346 AGAAGAAAGCGTGGTGATCTATC-GGAAGAAGTCAAGAAATACTTAACCTCAAGAAAATC 404
||||||||||||| |||||||| ||| || |||||||||||||||||||| |||| |||
Sbjct 60 CGAAGAAAGCGTGGAGATCTATCTGGA-GAGGTCAAGAAATACTTAACCTCGAGAAGATC 118
Query 405 TCTT-AAGAAGTCATTCCAGAAAG-TACAAAAGT-CTTTGAAGGTTACACAAG-CTGAAG 460
| | |||||||||||||| |||| | | |||| ||| |||| | | ||||| | |||
Sbjct 119 -CATCAAGAAGTCATTCCA-AAAGGTCCTAAAGCGCTT-GAAGATCAAACAAGACC-AAG 174
Query 461 ACAA-CAACGATGACA-CTTTGGCTGTCTTTGGAGAAGCAGAAGCTATTACACTTTCTCT 518
| | |||||| || | ||||||| || ||||||||||| |||||||||||| | | ||
Sbjct 175 A-ATGCAACGACGA-ATCTTTGGCAGTTTTTGGAGAAGCTGAAGCTATTACAATGACCCT 232
Query 519 GTTTGATTCTCTCCTTAGCTA-CATGTCTGGATCAAAGACTTGTAGTAAATGGTCAGTCG 577
||||||||| | || | | |||||||||||||||| ||||| | ||||||||| | |
Sbjct 233 TTTTGATTCTTTG-TTCTCCATCATGTCTGGATCAAAGGCTTGTGGCAAATGGTCATTGG 291
Query 578 TCTCAAAGCTAATGAACAAGAAGAA-AGT-TACATGTGAAGC-GCAAGAAAACGAATTCA 634
||||||||||||||||| |||| || | | | ||||| |||| | | ||||| |||||||
Sbjct 292 TCTCAAAGCTAATGAACCAGAAAAATA-TCT-CATGTAAAGCAG-AGGAAAATGAATTCA 348
Query 635 CGAAGGTTG-ATTCCGAATTTCAATCCGAAAAGACCTTGAAGA-TGGATGATGTTCAGA 691
| |||| || | ||| ||||||||||||||||||| || || | |||| ||||||||||
Sbjct 349 C-AAGGGTGGACTCCAAATTTCAATCCGAAAAGAC-TTAAAAAATGGAGGATGTTCAGA 405
> Ahg491129 jgi|Araly1|491129|fgenesh2_kg.7__562__AT4G35210.1
Length=739
Score = 193 bits (104), Expect = 2e-48
Identities = 202/247 (82%), Gaps = 15/247 (6%)
Strand=Plus/Plus
Query 552 AAAGACTTGTAGTAAATGGTCAGTCGTCTCAAAGCTAATGAACAAGAAG-AAAGTTACAT 610
|||| ||||| | |||||| || | ||||||||| | |||| | | ||| ||||||||||
Sbjct 484 AAAG-CTTGTGGAAAATGGCCACTAGTCTCAAAGATGATGAGCCA-AAGCAAAGTTACAT 541
Query 611 GTGAAGC-GCAAGAAAACGAATTCACGAAG-GTTGA-TTCCGAATTTCAATCCGAAAAGA 667
||||||| | | | ||| |||||||| ||| || || | || || ||||||||||||
Sbjct 542 GTGAAGCAG-ATGCAAATGAATTCAC-AAGAGTAGACAT-GGAGTTCCAATCCGAAAAGT 598
Query 668 CCTTGAAGATGGATGATGTTCAGAACCTAGAGTCATGCATTCAAGATCTTGAAGATGG-A 726
| ||| ||||||| ||||| |||||| ||||||||||||||||||||||||||||||| |
Sbjct 599 CGTTGCAGATGGAGGATGTGCAGAACTTAGAGTCATGCATTCAAGATCTTGAAGATGGGA 658
Query 727 CTTGAATCACTTTC-AAAGTCATTGATTAAATACAGAGTCTCATTTCTTAACATCT--TA 783
||| ||||| || ||| |||||||| ||||| ||||||||| |||||||||||| ||
Sbjct 659 -TTGGGTCACTCTCTAAA-TCATTGATCAAATATAGAGTCTCAATTCTTAACATCTAATA 716
Query 784 GGCCACT 790
|| ||||
Sbjct 717 GGTCACT 723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29240277339
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5