BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G17080.1 Length=792 Score E Sequences producing significant alignments: (Bits) Value Ahg931555 jgi|Araly1|931555|scaffold_304012.1 1171 0.0 Ahg931554 jgi|Araly1|931554|scaffold_304011.1 948 0.0 Ahg931549 jgi|Araly1|931549|scaffold_304006.1 887 0.0 Ahg931551 jgi|Araly1|931551|scaffold_304008.1 339 3e-92 Ahg491129 jgi|Araly1|491129|fgenesh2_kg.7__562__AT4G35210.1 193 2e-48 > Ahg931555 jgi|Araly1|931555|scaffold_304012.1 Length=823 Score = 1171 bits (634), Expect = 0.0 Identities = 742/793 (94%), Gaps = 11/793 (1%) Strand=Plus/Plus Query 1 ATGGCAGTCTCCTTCCACGTTCGATCTAACAGCTTCCCCTCAAGATCTCACCCACAAGCT 60 ||||| ||||| |||||| |||| || ||||||||||||||||||||||||||||||||| Sbjct 21 ATGGCCGTCTCTTTCCACATTCGCTCGAACAGCTTCCCCTCAAGATCTCACCCACAAGCT 80 Query 61 GCTCATGTGGATGAGCAGTTGGCCCGTTTGAGATCTTCCGAGCAAGCCTCATCATCTTCC 120 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 81 GCTCATGTCGATGAGCAGTTGGCCCGTTTGAGATCTTCCGAGCAAGCCTCATCATCTTCT 140 Query 121 AGCTCTTCTATCTGCCAAAGGCTTGACAACCTTCAAGAACTACATGAGTCTCTTGACAAG 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 141 AGCTCTTCTATCTGCCAAAGGCTTGACAACCTTCAAGAACTACATGAGTCTCTTGACAAG 200 Query 181 CTTAT-CAGCCGACCTGTCACACAACAGGCTCTTTCTCAAGAGCATAACAAGAAAGCCGT 239 ||||| || |||| ||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 201 CTTATCCA-CCGAGCTGTCACACAACAGGCTCTATCTCAAGAGCAGAACAAGAAAGCCGT 259 Query 240 TGAACAGCTTCTTGATGGATCCCTCAGGATCTTGGATTTGTGCAACATTTCCAAGGATGC 299 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 260 TGAGCAACTTCTTGATGGATCCCTCAGGATCTTGGATTTGTGCAACATTTCCAAGGATGC 319 Query 300 TTTGTCAGAGATGAAAGAGGGTCTCATGGAGATCCAATCAATTCTAAGAAGAAAGCGTGG 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 320 TTTGTCAGAGATGAAAGAGGGTCTCATGGAGATCCAATCAATTCTAAGAAGAAAGCGTGG 379 Query 360 TGATCTATCGGAAGAAGTCAAGAAATACTTAACCTCAAGAAAATCTCTTAAGAAGTCATT 419 |||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 380 AGATCTATCGGGAGAGGTCAAGAAATACTTAACCACAAGAAAATCTCTTAAGAAGTCATT 439 Query 420 CCAGAAAGTACAAAAGTCTTTGAAGGTTACACAAGCTGAAGACAACAACGATGACACTTT 479 |||||||| || ||||||||||||||||||||||| ||||| | ||| || | Sbjct 440 CCAGAAAGCACTTAAGTCTTTGAAGGTTACACAAGCCGAAGATGA-AAC-AT-----T-- 490 Query 480 GGCTGTCTTTGGAGAAGCAGAAGCTATTACACTTTCTCTGTTTGATTCTCTCCTTAGCTA 539 |||||| |||||||||||||||||||||||| || || ||||||||||||| ||||||| Sbjct 491 GGCTGTTTTTGGAGAAGCAGAAGCTATTACAATTGCTTTGTTTGATTCTCTATTTAGCTA 550 Query 540 CATGTCTGGATCAAAGACTTGTAGTAAATGGTCAGTCGTCTCAAAGCTAATGAACAAGAA 599 ||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||| Sbjct 551 CATGTCTGGATCAAAGATTTGTAGCAAATGGTCAGTCGTCTCACAGCTAATGAACAAGAA 610 Query 600 GAAAGTTACATGTGAAGCGCAAGAAAACGAATTCACGAAGGTTGATTCCGAATTTCAATC 659 ||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| Sbjct 611 GAAAGCTACATGTGAAGCGCAAGCAAACGAATTCACGAAAGTTGATTCCGAATGTCAATA 670 Query 660 CGAAAAGACCTTGAAGATGGATGATGTTCAGAACCTAGAGTCATGCATTCAAGATCTTGA 719 ||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| Sbjct 671 CGAAAAGACCTTGAAGATGGAGGATGTTCAGAAACTAGAGTCATGCATACAAGATCTTGA 730 Query 720 AGATGGACTTGAATCACTTTCAAAGTCATTGATTAAATACAGAGTCTCATTTCTTAACAT 779 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 731 AGATGGACTTGAATCACTTTCAAAGTCATTGATTAAATACAGAGTCTCATTTCTTAACAT 790 Query 780 CTTAGGCCACTAA 792 ||||||||| ||| Sbjct 791 CTTAGGCCATTAA 803 > Ahg931554 jgi|Araly1|931554|scaffold_304011.1 Length=832 Score = 948 bits (513), Expect = 0.0 Identities = 708/801 (88%), Gaps = 18/801 (2%) Strand=Plus/Plus Query 1 ATGGCAGTCTCCTTCCACGTTCGATCTAACAGCTT-CCCCTCAAGATCTCACCCACAAGC 59 ||||| ||||||||||||||||| || |||| || ||||| | | ||||||||||||| Sbjct 21 ATGGCTGTCTCCTTCCACGTTCGCTCCCACAG-TTATCCCTCGATACCTCACCCACAAGC 79 Query 60 TGCTCATGTGGATGAGCAGTTGGCCCGTTTGAGATCTTCCG-AGCAAGCCTCATCATCTT 118 ||||||| ||||||||||||||| | || |||||||| | || || ||||| |||||| Sbjct 80 CACTCATGTTGATGAGCAGTTGGCCGGATTAAGATCTTCTGAAG-AAACCTCAACATCTT 138 Query 119 CCAGCTCTTCTATCTGCCAAAGGCTTGACAACCTTCAAGAAC-TACATGAGTCTCTTGAC 177 | |||||||||||||| ||||| |||||||||||||||| || ||||||||||||||||| Sbjct 139 CAAGCTCTTCTATCTGTCAAAGACTTGACAACCTTCAAG-ACTTACATGAGTCTCTTGAC 197 Query 178 AAGCTTATCAGCCGACCTGTCACACAACAGGCTCTT-TCTCAAGAGCATAACAAGAAAGC 236 ||||||||| ||| ||| || |||||||| ||| || ||||||||| ||||||||||| Sbjct 198 AAGCTTATCCGCCTACCCGTTACACAACACGCT-TTAGGTCAAGAGCAGAACAAGAAAGC 256 Query 237 CGTTGAACAGCTTCTTGATGGATCCCTCAGGATCTTGGATTTGTGCAACATTTCCAAGGA 296 |||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 257 CGTTGAGCAGCTTCTTGATGGATCTCTCAGGATCTTGGATGTGTGCAACATTTCCAAGGA 316 Query 297 TGCTTTGTCAGAGATGAAAGAGGGTCTCATGGAGATCCAATCAATTCTAAGAAGAAAGCG 356 ||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 317 TGCTTTGTCCCAGATGAAAGAAGGTCTCATGGAGATCCAATCGATTCTAAGAAGAAAGCG 376 Query 357 TGGTGATCTATC-GGAAGAAGTCAAGAAATACTTAACCTCAAGAAAATCTCTT-AAGAAG 414 || |||||||| || ||| ||||||||||||||| | |||||||| || ||| |||||| Sbjct 377 CGGAGATCTATCAGG-AGAGGTCAAGAAATACTTAGCTTCAAGAAAGTC-CTTCAAGAAG 434 Query 415 TCATTCCAGAAAGTACAAAAGTCTTTGAAGGTTACACAAGCTGAAGACAACAACGATGAC 474 || |||||||||||||||||||| | |||||| ||||||| |||||||||||||| | Sbjct 435 ACAATCCAGAAAGTACAAAAGTCTCTCAAGGTTGCACAAGCCGAAGACAACAACGA-CAA 493 Query 475 A-CTTTGGCTGTCTTTGGAGAAGCAGAAGCTATTACACTTTCTCTGTTTGATTCTCTCCT 533 | |||||||||| ||||||||||||||||| ||||| || ||||||||||||||||| | Sbjct 494 ATCTTTGGCTGTGTTTGGAGAAGCAGAAGCCGTTACAATTGCTCTGTTTGATTCTCTCTT 553 Query 534 TAGCTACATGTCTGGATCAAAGACTTGTAGTAAATGGTCAGTCGTCTCAAAGCTAATGAA 593 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 554 TAGCTACATGTCTGGATCAAAGACTTGTAGCAAATGGTCAGTCGTCTCAAAGCTAATGAA 613 Query 594 CAAGAAGAAAGTTACATGTGAAGCGCAAGAAAACGAATTCACGAAGGTTGATTCCGAATT 653 |||||||||| ||||||||||||| ||||||||||||||||| |||||||| |||||||| Sbjct 614 CAAGAAGAAAATTACATGTGAAGCACAAGAAAACGAATTCACTAAGGTTGACTCCGAATT 673 Query 654 TCAATCCGAAAAGACCTTGAAGATGGATGATGTTCAGAACCTAGAGTCATGCATTCAAGA 713 |||||||| ||||| ||||| ||||| ||||| |||| ||||||||||||||||||||| Sbjct 674 CCAATCCGAGAAGACTTTGAAAATGGAGGATGTGCAGATCCTAGAGTCATGCATTCAAGA 733 Query 714 TCTTG-AAGATGGACTTGAATCACTT-TCAAAGTCATTGATTAAATACAGAGTCTCATTT 771 | ||| ||||||||||||||||| || || || |||||||| ||||||||||| ||| || Sbjct 734 T-TTGGAAGATGGACTTGAATCA-TTATCTAATTCATTGATCAAATACAGAGTTTCAATT 791 Query 772 CTTAACATCTTAGGCCACTAA 792 ||||||| ||| ||||| ||| Sbjct 792 CTTAACAGCTTTGGCCATTAA 812 > Ahg931549 jgi|Araly1|931549|scaffold_304006.1 Length=833 Score = 887 bits (480), Expect = 0.0 Identities = 696/800 (87%), Gaps = 16/800 (2%) Strand=Plus/Plus Query 1 ATGGCAGTCTCCTTCCACGTTCGATCTAACAGCTTCCCCTCAAGATC-TCACCCACAAGC 59 ||||||||||| ||||||||||| |||||||| ||||| || ||| | || ||||||||| Sbjct 21 ATGGCAGTCTCTTTCCACGTTCGCTCTAACAGTTTCCCTTCTAGA-CTTCCCCCACAAGC 79 Query 60 TGCTCATGTGGATGAGCAGTTGGCCCGTTTGAGATCTTCCGAGCAAGCCTC-ATCATCTT 118 |||||||| |||||||||||||| || || |||||||| ||| | ||||| | |||||| Sbjct 80 CGCTCATGTCGATGAGCAGTTGGCTCGATTAAGATCTTCTGAGGATGCCTCGA-CATCTT 138 Query 119 CCAGCTCTTCTATCTGCCAA-AGGCTTGACAACCTTCAAGAACTACATGAGTCTCTTGAC 177 | ||||||| |||||| ||| || ||||| ||||||||||| |||||||||||||||||| Sbjct 139 CTAGCTCTTATATCTG-CAATAGACTTGAAAACCTTCAAGAGCTACATGAGTCTCTTGAC 197 Query 178 AAGCTTA-TCAGCCGACCTGTCACACAACAGGCTCTTTCTCAAGAGCATAACAAGAAAGC 236 ||| ||| || ||| |||||| |||||||| ||||| ||||||||| ||||||||||| Sbjct 198 AAGTTTATTC-GCCTACCTGTAACACAACAAGCTCTAGGTCAAGAGCAGAACAAGAAAGC 256 Query 237 CGTTGAACAGCTTCTTGATGGATCCCTCAGGATCTTGGATTTGTGCAACATTTCCAAGGA 296 ||| || || |||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 257 CGTCGAGCAACTTCTTGATGGATCTTTAAGGATCTTGGATTTGTGCAACATTTCCAAGGA 316 Query 297 TGCTTTGTCAGAGATGAAAGAGGGTCTCATGGAGATCCAATCAATTCTAAGAAGAAAGCG 356 |||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct 317 TGCTTTGTCACAGATGAAAGAGGGTCTCATGGAGATCCAATCGATTCTACGAAGAAAGCG 376 Query 357 TGGTGATCTATCGGAAGAAGTCAAGAAATACTTAACCTCAAGAAAATCTCTTAAGAAGTC 416 ||||| ||| ||| ||| ||||||||||||||| ||||||||| ||| || |||||||| Sbjct 377 CGGTGACCTACCGGGAGAGGTCAAGAAATACTTAGCCTCAAGAAGATCCCTAAAGAAGTC 436 Query 417 ATTCCAGAAAG-TACAAAAGTCTTTGAAGGTTACACAAG-CTGAAGACAACAACGATGAC 474 |||||| |||| | | ||| ||||||||| | ||||| | |||| | ||| | Sbjct 437 ATTCCA-AAAGGTCCTCAAGAGTTTGAAGGTCAAACAAGACC-AAGAGTGCGGCGACAA- 493 Query 475 A-CTTTGGCTGTCTTTGGAGAAGCAGAAGCTATTACACTTTCTCTGTTTGATTCTCTCCT 533 | | ||||| || |||||||||||||||| | | ||| || |||||||||||||||| | Sbjct 494 ATCCTTGGCAGTGTTTGGAGAAGCAGAAGATGTGACAATTGCTCTGTTTGATTCTCTGTT 553 Query 534 TAGCTACATGTCTGGATCAAAGACTTGTAGTAAATGGTCAGTCGTCTCAAAGCTAATGAA 593 | ||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 554 TTGCTTCATGTCTGGATCAAAGACTTGTAGCAAATGGTCTGTCGTCTCAAAGCTAATGAA 613 Query 594 CAAGAAGAAAGTTACATGTGAAGCGCAAGAAAACGAATTCACGAAGG-TTGATTCCGAAT 652 |||||||||||||||||||||||| |||| |||||||||||| |||| |||||||||||| Sbjct 614 CAAGAAGAAAGTTACATGTGAAGCTCAAGGAAACGAATTCAC-AAGGGTTGATTCCGAAT 672 Query 653 TTCAATCCGAAAAGACCTTGAAGATGGATGATGTTCAGAACCTAGAGTCATGCATTCAAG 712 | |||||||||||||| ||||||||||| |||||||||| | |||| ||||||||||||| Sbjct 673 TCCAATCCGAAAAGACATTGAAGATGGAAGATGTTCAGATCTTAGATTCATGCATTCAAG 732 Query 713 ATCTTGAAGATGGACTTGAATCACTTTCAAAGTCATTGATTAAATACAGAGTCTCATTTC 772 |||||||||||||||||||||| || || ||||| ||||| ||||||||||||||| ||| Sbjct 733 ATCTTGAAGATGGACTTGAATCTCTCTCTAAGTCTTTGATCAAATACAGAGTCTCAATTC 792 Query 773 TTAACATCTTAGGCCACTAA 792 |||||||||||||||||||| Sbjct 793 TTAACATCTTAGGCCACTAA 812 > Ahg931551 jgi|Araly1|931551|scaffold_304008.1 Length=406 Score = 339 bits (183), Expect = 3e-92 Identities = 345/419 (82%), Gaps = 28/419 (7%) Strand=Plus/Plus Query 287 TTTCCAAGGATGCTTTGTCAG-AGATGAAAGAGGGTCTCATGGAGATCCAATCAATTCTA 345 ||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 1 TTTCCAAGGATACTTTGTC-GTAGATGAAAGAGGGTCTCATGGAGATCCAATCAATTCTT 59 Query 346 AGAAGAAAGCGTGGTGATCTATC-GGAAGAAGTCAAGAAATACTTAACCTCAAGAAAATC 404 ||||||||||||| |||||||| ||| || |||||||||||||||||||| |||| ||| Sbjct 60 CGAAGAAAGCGTGGAGATCTATCTGGA-GAGGTCAAGAAATACTTAACCTCGAGAAGATC 118 Query 405 TCTT-AAGAAGTCATTCCAGAAAG-TACAAAAGT-CTTTGAAGGTTACACAAG-CTGAAG 460 | | |||||||||||||| |||| | | |||| ||| |||| | | ||||| | ||| Sbjct 119 -CATCAAGAAGTCATTCCA-AAAGGTCCTAAAGCGCTT-GAAGATCAAACAAGACC-AAG 174 Query 461 ACAA-CAACGATGACA-CTTTGGCTGTCTTTGGAGAAGCAGAAGCTATTACACTTTCTCT 518 | | |||||| || | ||||||| || ||||||||||| |||||||||||| | | || Sbjct 175 A-ATGCAACGACGA-ATCTTTGGCAGTTTTTGGAGAAGCTGAAGCTATTACAATGACCCT 232 Query 519 GTTTGATTCTCTCCTTAGCTA-CATGTCTGGATCAAAGACTTGTAGTAAATGGTCAGTCG 577 ||||||||| | || | | |||||||||||||||| ||||| | ||||||||| | | Sbjct 233 TTTTGATTCTTTG-TTCTCCATCATGTCTGGATCAAAGGCTTGTGGCAAATGGTCATTGG 291 Query 578 TCTCAAAGCTAATGAACAAGAAGAA-AGT-TACATGTGAAGC-GCAAGAAAACGAATTCA 634 ||||||||||||||||| |||| || | | | ||||| |||| | | ||||| ||||||| Sbjct 292 TCTCAAAGCTAATGAACCAGAAAAATA-TCT-CATGTAAAGCAG-AGGAAAATGAATTCA 348 Query 635 CGAAGGTTG-ATTCCGAATTTCAATCCGAAAAGACCTTGAAGA-TGGATGATGTTCAGA 691 | |||| || | ||| ||||||||||||||||||| || || | |||| |||||||||| Sbjct 349 C-AAGGGTGGACTCCAAATTTCAATCCGAAAAGAC-TTAAAAAATGGAGGATGTTCAGA 405 > Ahg491129 jgi|Araly1|491129|fgenesh2_kg.7__562__AT4G35210.1 Length=739 Score = 193 bits (104), Expect = 2e-48 Identities = 202/247 (82%), Gaps = 15/247 (6%) Strand=Plus/Plus Query 552 AAAGACTTGTAGTAAATGGTCAGTCGTCTCAAAGCTAATGAACAAGAAG-AAAGTTACAT 610 |||| ||||| | |||||| || | ||||||||| | |||| | | ||| |||||||||| Sbjct 484 AAAG-CTTGTGGAAAATGGCCACTAGTCTCAAAGATGATGAGCCA-AAGCAAAGTTACAT 541 Query 611 GTGAAGC-GCAAGAAAACGAATTCACGAAG-GTTGA-TTCCGAATTTCAATCCGAAAAGA 667 ||||||| | | | ||| |||||||| ||| || || | || || |||||||||||| Sbjct 542 GTGAAGCAG-ATGCAAATGAATTCAC-AAGAGTAGACAT-GGAGTTCCAATCCGAAAAGT 598 Query 668 CCTTGAAGATGGATGATGTTCAGAACCTAGAGTCATGCATTCAAGATCTTGAAGATGG-A 726 | ||| ||||||| ||||| |||||| ||||||||||||||||||||||||||||||| | Sbjct 599 CGTTGCAGATGGAGGATGTGCAGAACTTAGAGTCATGCATTCAAGATCTTGAAGATGGGA 658 Query 727 CTTGAATCACTTTC-AAAGTCATTGATTAAATACAGAGTCTCATTTCTTAACATCT--TA 783 ||| ||||| || ||| |||||||| ||||| ||||||||| |||||||||||| || Sbjct 659 -TTGGGTCACTCTCTAAA-TCATTGATCAAATATAGAGTCTCAATTCTTAACATCTAATA 716 Query 784 GGCCACT 790 || |||| Sbjct 717 GGTCACT 723 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29240277339 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5