BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17090.1
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343326 jgi|Araly1|343326|fgenesh1_pg.C_scaffold_3003089 2108 0.0
> Ahg343326 jgi|Araly1|343326|fgenesh1_pg.C_scaffold_3003089
Length=1407
Score = 2108 bits (1141), Expect = 0.0
Identities = 1307/1389 (94%), Gaps = 4/1389 (0%)
Strand=Plus/Plus
Query 1 ATGGGTTGTTGTTACTCACTATCTTCAACAGTAGATCCTGTTCAAGACCACACGACCGAT 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTTGTTGTTACTCATTATCTTCAACAGTAGATCCTGTTCAAGACCACACGACCGAT 60
Query 61 GCTTCTTCCGAACCTAGAAACGGCGGAGGAGAAGATCCACCATTGACAAAATTCTCTTTT 120
|||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 61 GCTTCTTCTGAACCTAGAAACGGAGGAGGAGAAGATCCACCATTGATAAAATTCTCTTTC 120
Query 121 TCCGCTCTCAAGACGGCCACAAATCATTTTAGTCCCGAAAACATCGTTTCAGATCAAACC 180
|||| ||||||||| || || ||||||||| |||||||||||||||||||||||||||||
Sbjct 121 TCCGATCTCAAGACAGCAACCAATCATTTTTGTCCCGAAAACATCGTTTCAGATCAAACC 180
Query 181 TCCGATGTTGTCTTTAAAGGACGTTTGCAAAACGGTGGTTTCGTCGCTATCAAGAGATTT 240
||||||||||||||||| || ||||| |||||| |||||||| || || |||||||||||
Sbjct 181 TCCGATGTTGTCTTTAAGGGCCGTTTACAAAACTGTGGTTTCATCTCTGTCAAGAGATTT 240
Query 241 AATAACATGGCTTGGTCTGATCCTAAACTATTTTTGGAAGAGGCACAAAGAGTAGGGAAG 300
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 241 AATAACATGGCTTGGTCTGATCCTAAACTCTTTGTGGAAGAGGCACAAAGAGTAGGGAAG 300
Query 301 TTAAGACACAAGAGACTCGTAAATTTGATTGGATATTGCTGTGATGGAGATAAAAGGTTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTAAGACACAAGAGACTCGTAAATTTGATTGGATATTGCTGTGATGGAGATAAAAGGTTT 360
Query 361 CTTGTTGCAGATTTCATGGCTAATGATACTCTTGCGAAGCGTTTATTCCAGCGGAAATAT 420
|||||||||||||| ||| | |||||||||||||| ||||||||||||||||||||| ||
Sbjct 361 CTTGTTGCAGATTTGATGCCAAATGATACTCTTGCTAAGCGTTTATTCCAGCGGAAAAAT 420
Query 421 CAAACCATGGATTGGTCTATTAGGTTAAGAGTCGCCTATTTTGTAGCTGAAGCAT-TGGA 479
|||||||||||||||||||||||||||||||| ||||||| |||||| ||||| | ||||
Sbjct 421 CAAACCATGGATTGGTCTATTAGGTTAAGAGTAGCCTATTGTGTAGCGGAAGC-TCTGGA 479
Query 480 TTATTGCAACACTGCAGGCTTTGCATCATACAATAACTTAAGCGCTTACAAGGTTTTGTT 539
||||||||||||| ||||||||||||| |||| ||| ||||| |||||||||||||||||
Sbjct 480 TTATTGCAACACTTCAGGCTTTGCATCGTACAGTAATTTAAGTGCTTACAAGGTTTTGTT 539
Query 540 TGATGAGGATGGTGATGCATGTCTTTCTTGTTTCGGCTTGATGAAGGAGATTAATAATGA 599
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 TGATGAGGATGGTGATGCATGTCTTTCTTGTTTCGGCTTGATGAAGGAGATCAATAATGA 599
Query 600 TCAAATTACAACAGGAAGTGTGAACCCTGAAAATGTGATATACCGATTTGGTACTGTCCT 659
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 600 TCAAATAACAACAGGAAGTGTGAACCCTGAAAATGTGATATATAGATTTGGTACTCTCCT 659
Query 660 TGTGAATCTTCTAAGTGGAAAGCAAATTCCTCCAAGCCACGCTCCTGAGATGATACATCG 719
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 660 AGTGAATCTTCTAAGTGGAAAGCAAATTCCTCCAAGCCATGCTCCTGAGATGATACATCG 719
Query 720 AAAGAATGTGTTTAAGTTGATGGATCCATACCTGAAGGGGAAGTTCTCCATAGATGAAGC 779
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AAAGAATGTTTTTAAGTTGATGGATCCATACCTGAAGGGGAAGTTCTCCATAGATGAAGC 779
Query 780 TAACGTAGTTTATAAACTCGCCTCTCAATGTTTGAAGTACGAGGGTCAAGAGAGTCCCAA 839
|| ||||||||| ||||||||||||||||||||| ||||||||| ||| |||||||||||
Sbjct 780 TACCGTAGTTTACAAACTCGCCTCTCAATGTTTGCAGTACGAGGATCACGAGAGTCCCAA 839
Query 840 CACAAAAGAGATTGTTGCAACGCTTGAAACCTTGCAAACTAGAACAGAAGCTCCATCATA 899
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 840 CACAAAAGAGATTGTTGCAACACTTGAAACCTTGCAAACTAGAACAGAAGCTCCATCACA 899
Query 900 TGAAGTTGTTGAAATGACAAACCAA-GAGAAGGATGCATCATCGTCAAGTAATCTTTCGC 958
||||||| |||||||| ||| || | |||||||| ||||||||||||||| |||||||||
Sbjct 900 TGAAGTTATTGAAATGGCAA-CCGACGAGAAGGAGGCATCATCGTCAAGTCATCTTTCGC 958
Query 959 CACTAGGAGAGGCTTGTTTGAGAATGGACCTCGCATCGATTCATTCAATCTTGGTCTTGG 1018
|||||||||||||||||| |||||| ||||||| ||| |||||| ||||||||| ||||
Sbjct 959 CACTAGGAGAGGCTTGTTCGAGAATAGACCTCGAATCTATTCATAAAATCTTGGTGTTGG 1018
Query 1019 CAGGATATGATGATGACAAGGATATCATCGAGTTATCTTTCGAAGAATGGATACAAGAGG 1078
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1019 CAGGATATGAGGATGACAAGGATGTCATCGAGTTATCTTTCGAAGAATGGATACAAGAGG 1078
Query 1079 TGAAAGAACTTCAAGATGTTCGAAGAAACGGTGATCGAGCCTTCGTAGAGCAAGACTTCA 1138
||| |||||||||||||||||||||| |||||||||| |||||||||||| |||||||||
Sbjct 1079 TGAGAGAACTTCAAGATGTTCGAAGACACGGTGATCGGGCCTTCGTAGAGGAAGACTTCA 1138
Query 1139 AAACCGCTATTGCCTGTTATTCTCAGTTCGTTGAAGAGAGGTCATTGGTATACCCAAGTG 1198
||||||| || ||||||||||||||||| ||||| || |||||| |||||||||||||||
Sbjct 1139 AAACCGCCATCGCCTGTTATTCTCAGTTTGTTGAGGAAAGGTCAATGGTATACCCAAGTG 1198
Query 1199 TTTACGCAAGGCGTAGTCTAAGCTATCTATTCTGCGATGAGCCAGAAAAGGCCCTCCTCG 1258
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1199 TTTACGCGAGGCGTAGTCTAAGCTATCTATTCTGCGATGAGCCAGAAAAAGCCCTTCTCG 1258
Query 1259 ATGGGATGCATGCACAGGGAGTGTTTCCTGATTGGCCAACCGCCTTCTACTTGCAGTCTG 1318
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1259 ATGGTATGCATGCACAGGGAGTGTTCCCTGATTGGCCAACCGCCTTCTACTTGCAGTCTG 1318
Query 1319 TGGCATTAGCCAAACTCGACATGAACACTGATTCTGCTGATACTTTGAAAGAAGCAGCTC 1378
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1319 TGGCATTAGCCAAACTCAACATGAACACTGATTCTGCTAATACTTTGAAAGAAGCAGCTC 1378
Query 1379 TTCTTGAAG 1387
|||||||||
Sbjct 1379 TTCTTGAAG 1387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52259816140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5