BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17110.1
Length=2684
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480593 jgi|Araly1|480593|fgenesh2_kg.3__3294__AT2G17110.1 3637 0.0
> Ahg480593 jgi|Araly1|480593|fgenesh2_kg.3__3294__AT2G17110.1
Length=2623
Score = 3637 bits (1969), Expect = 0.0
Identities = 2439/2652 (92%), Gaps = 88/2652 (3%)
Strand=Plus/Plus
Query 50 TTCTGATTCTTCGAATCTCAAAGAAATTTCAAAACTTTTTGATTTTGATGGGTTGTTCAA 109
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 34 TTCTGATTCTTCGAATCT-GAAGAAATTTCAAAACTTTTTGATTTTGATGGGTTGTTCAA 92
Query 110 CCTCAAAGCTCGACGATCTTCCAGCGGTGGCGCTTTGTCGTGACCGTTGTAGCTTCCTTG 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 93 CCTCAAAGCTCGACGATCTTCCAGCGGTGGCGCTTTGTCGTGACCGTTGTAGCTTCCTTG 152
Query 170 AAGCAGCGATTCATCAACGTTACGCTTTATCAGAAGCTCACGTATCCTACACACAATCCT 229
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 153 AAGCAGCGATTCATCAACGTTACGCTTTATCCGAAGCTCACGTATCCTACACACAATCCT 212
Query 230 TAAAAGCAATCTCTCACTCTCTTCACCAATTCATCAATCACCACCACCGT---TAC-A-- 283
||||||||||| |||||||||||||||||||||||||||||||| ||||| || |
Sbjct 213 TAAAAGCAATCGCTCACTCTCTTCACCAATTCATCAATCACCACGACCGTAACGACGACG 272
Query 284 ACGATTCCGATTCACCCAAAAAAGCTAAACCCAAGATGGATTCTGGGTCGGGTCATCTCG 343
||||||| ||||||||||| |||||||||||||| |||||| ||||||||||||||||||
Sbjct 273 ACGATTCGGATTCACCCAAGAAAGCTAAACCCAATATGGATCCTGGGTCGGGTCATCTCG 332
Query 344 ATTTCGATTCGGATTCTGACTCTGACGACGATGATGATATTGATTCGTTGCATTCATCTC 403
||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||
Sbjct 333 ATTTCGATTCGGATTCTGA---T---GACGATGATGATATTGATTCGTTGCATTCGTCTC 386
Query 404 CTCTCCATCATCATCTAGAAGATGATGACTCGAATCCGAAATCGTATTTGCATATGAATT 463
|||| ||||||||| | ||| |||||||||||| ||||||||||||||||||||||||
Sbjct 387 CTCTGCATCATCAT-T--TAGACGATGACTCGAATTCGAAATCGTATTTGCATATGAATT 443
Query 464 ATATGAAGAATAGTTATATGCCTCCTTCTTTGGTTTATGAGCAGAGACCTTCGAGTCCTC 523
|||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 444 ATATGAAGAACAGTTCTATGCCTCCTTCTGTGGTTTATGAGCAGAGACCTTCGAGTCCTC 503
Query 524 AGAGAGTTCATTTCGGTGAATCATCATCATCATCAACCTCTGAGTA-TA--ATCCATATC 580
|||||||| ||||||||| | ||||||||||||||||||||| || |||||||||
Sbjct 504 AGAGAGTTTATTTCGGTG----A--ATCATCATCAACCTCTGAGTATTACCATCCATATC 557
Query 581 TGAATTCGAACTACGGATCGAAATTGCCTCCGCCGCCACCGTCGCCGCCGAGGGAAAAGG 640
|||| | | | || | |||||||||| ||||||| ||||| |||||||||||||
Sbjct 558 TGAA-T-----T-C-GA--G--ATTGCCTCCGGCGCCACCATCGCCACCGAGGGAAAAGG 605
Query 641 TTTGGGATTTCTTAGACCCTTTTGATACGTATTATACTCCGTATACTCCTAGTCGTGATA 700
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 606 TTTGGGATTTCTTAAACCCTTTTGATACGTATTATACTCCGTACACTCCTAGTCGTGATT 665
Query 701 CGAGAGAGTTAAGAGATGAATTGGGTGTTCCGGATTTAGAGGAAGATGATGTA-GTTGTT 759
|||||||| ||||||| |||||||||||||||||||||||||| ||||||| | |||||
Sbjct 666 CGAGAGAGATAAGAGAGGAATTGGGTGTTCCGGATTTAGAGGATGATGATG-AGGTTGTC 724
Query 760 AAGGAAGTACATGGGAAACAGAAATTTGTAGCTGCAGTTTCTGTGGAAGAGCCGTTAGGT 819
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 725 AAGGAAGTACATGGGAAACAGAAATTTGTGGCTGCAGTTTCTGTGGAAGAGCCGTTAGGT 784
Query 820 AACTCCGGTGCTAGCACTAGCggaggaggaggagga-g-g-aggTAAGGCTTCTTTGTAT 876
|||||||||||||||||||||||||||||||||||| | | |||| ||||||||||||||
Sbjct 785 AACTCCGGTGCTAGCACTAGCGGAGGAGGAGGAGGAGGAGAAGGTCAGGCTTCTTTGTAT 844
Query 877 CAGACTAGGCCAAGTGTGTCAGTTGAGAAAGAAGAAATGGAGCATGAGGTTCATATTGTG 936
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 845 CAGACTAGGCCAAGTGTGTCAGTTGGGAAAGAAGAAATGGAGCATGAGGTTCATGTTGTG 904
Query 937 GAGaaaaaaaTTGTTGAGGATAGT---GGTGGGGATGAGGTGAGGAAGAGTAAGGCTGCG 993
||||| ||| ||||||||||| || ||||||||||||||| |||||||||| ||||||
Sbjct 905 GAGAAGAAAGTTGTTGAGGATGGTGGAGGTGGGGATGAGGTGCGGAAGAGTAATGCTGCG 964
Query 994 GTGGCACGTGGTGGTGGCGGTG-TCAGACGTGGGGTTCCTGAGGTTGCGAAAGAGATAGA 1052
|| |||||||||||||||| || || | ||| |||| |||||||||||||||||||||||
Sbjct 965 GTCGCACGTGGTGGTGGCGATGTTC-GGCGTAGGGTGCCTGAGGTTGCGAAAGAGATAGA 1023
Query 1053 AGCTCAGTTCTTGAGAGCTGCAGAGTCAGGAAATGAGATCGCAGTGATGCTTGAAGTGGG 1112
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1024 AGCTCAGTTCTTGAGAGCTGCAGAGTCAGGAAATGAGATTGCAGTGATGCTTGAAGTGGG 1083
Query 1113 GAAACATCCATATGGTCGCAAAAATGTTTCTTCGAAGAAGCTATATGAGGGGACCCCATC 1172
||| ||||| |||||||||||| ||||||| ||||||||||| |||||| | ||||||
Sbjct 1084 GAAGCATCCTTATGGTCGCAAACATGTTTCATCGAAGAAGCTGCATGAGGTTAACCCATC 1143
Query 1173 ACCGTCTGTGGTTTCGTCAGCTCAATCATCAACCTCCAAAAAAGCTAAAGCTGAAGCCTC 1232
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1144 ACCGTCTGTGGTTTCGTCAGCTCAATCATCAACCTCCAAGAAAGCTAAAGCTGAAGCCTC 1203
Query 1233 TTCTTCAGTGACTGCTCCTACTTATGCAGACATTGAGGCAGAGCTTGCTTTAAAGTCTCG 1292
|||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1204 TTCTTCAGTGGCTGCTCCTACTTACGCAGACATTGAGGCAGAGCTTGCTTTAAGGTCTCG 1263
Query 1293 TAATCTTTCTTCGACATTGCACAAGCTCCACCTTTGGGAGAAGAAGCTTTACGATGAGGT 1352
||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 1264 TAATCTTTCTTCGACATTGCACAAGCTCCACCTTTGGGAGAAGAAGCTTTATGACGAAGT 1323
Query 1353 CAAGGCCGAGGAAAAAATGCGTGTAAACCATGAGAAAAAGTTAAGGAAGCTTAAGCGTAT 1412
|||||| ||||||||| ||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1324 CAAGGCTGAGGAAAAACTGCGTGTAAACCACGAGAAAAAGTTAAGGAAGCTGAAGCGTAT 1383
Query 1413 GGATGAAAGAGGTGCCGAGAATCAAAAAGTAGATTCAACACGAAAATTAGTTAGAAGTTT 1472
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1384 GGATGAAAGAGGTGTCGAGGATCAAAAAGTAGATTCAACACGAAAATTAGTTAGAAGTAT 1443
Query 1473 GTCCACAAAGATAAGGATTGCGATTCAAGTTGTTGACAAAATATCAGTTACAATTAACAA 1532
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1444 GTCCTCAAAGATAAGGATTGCGATTCAAGTTGTTGACAAAATATCAATTACAATTAACAA 1503
Query 1533 GATAAGAGACGAAGAGCTATGGCTGCAACTCAATGAATTGATCCAAGGGCTTAGCAAAAT 1592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 GATAAGAGACGAAGAGCTATGGCTGCAACTCAATGAATTGATCCAAGGGCTTAGCAAAAT 1563
Query 1593 GTGGAAATCCATGCTTGAGTGCCATAAAAGTCAGTGTGAGGCTATTAAGGAAGCCAGAGG 1652
||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1564 GTGGAAATCTATGCTCGAGTGCCATCAAAGTCAGTGTGAGGCTATTAAGGAAGCCAGAGG 1623
Query 1653 TTTAGGCCCCATTAGAGCAAGCAAAAATTTTGGTGGGGAGCATCTCGAGGTAACAAGGAC 1712
|||||||||||||||||| || ||||| |||||| | ||||||||||| |||||||
Sbjct 1624 TTTAGGCCCCATTAGAGCGAGTAAAAAACTTGGTGACAATCATCTCGAGGTTTCAAGGAC 1683
Query 1713 GCTT-GGATATGAACTTATAAATTGGATTGTGGGATTTTCGAGTTGGGTTAGTGCGCAAA 1771
|||| || | ||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1684 GCTTGGGCT-TGATCTTATAAATTGGATTGTGGGATTCTCGAGTTGGGTTAGTGCGCAAA 1742
Query 1772 AGGGTTTTGTAAGAGAGCTGAATAGTTGGCTTATGAAGTGTCTTTTCTATGAACCTGAGG 1831
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1743 AGGGTTTTGTACGAGAGCTGAATAGTTGGCTTATGAAGTGTCTTTTCTATGAACCTGAGG 1802
Query 1832 AAACTCCAGATGGAATCGTTCCTTTTTCTCCTGGTCGTATTGGGGCTCCAATGATTTTCG 1891
||||||| |||||||| ||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1803 AAACTCCCGATGGAATTGTTCCTTTTTCTCCTAGTCGTATTGGGGCTCCATTGATTTTCG 1862
Query 1892 TGATCTGTAACCAGTGGGAACAAGCTCTAGATAGAATATCAGAAAAGGAAGTTATCGAGG 1951
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1863 TGATCTGTAACCAGTGGGAACAAGCTCTGGATAGAATATCAGAAAAGGAAGTTATCGAGG 1922
Query 1952 CTATACGCCGTTTCACAACGAGTGTGCTTCATCTTTGGGAACAAGATAGGTTAGCAACCC 2011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1923 CTATACGCCGTTTCACAACGAGTGTGCTTCATCTTTGGGAACAAGATAGGTTAGCAACCC 1982
Query 2012 GGGAGAGGATTATAGGGCATGGTGATCCTAGGAATATGGACCGAGAGGAACAGAGAATAC 2071
|||| ||||| || |||||||||||||| |||||||||||||||||||||| |||||| |
Sbjct 1983 GGGATAGGATGATGGGGCATGGTGATCCAAGGAATATGGACCGAGAGGAACTGAGAATCC 2042
Query 2072 AGAAAGAGATTCAAGAATTGGAAATGAAAATGGTTCTGGTTGGTCCAGG-GGAAGATAAC 2130
|||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||
Sbjct 2043 AGAAAGAGATTCAAGAATTGGAAATGAAAATGGTTCTGGTGGGTCC-GGCCGAGGATAAC 2101
Query 2131 ATTGTCTACCAAAGCGACACTAGTAACGAGAGTTTACAGGGTAGTCTTCAACGTATATTT 2190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2102 ATTGTCTACCAAAGCGACACTAGTAACGAGAGTTTACAGGGTAGTCTTCAACGTATATTT 2161
Query 2191 GAAGCTATGGAGAGGTTTACAGAGGAATCTCTGAAAGCTTATGTAGATCTCTTACATCGT 2250
|||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 2162 GAAGCTATGGAGAGATTTACAGAGGAATCTGTGAAAGCTTATGTAGATCTCTTGCATCGT 2221
Query 2251 GCTGAAGAAGAAGAATGCGACTCTCGGGAAACAGATGAAGAAGACTAATGGAAAACCGTG 2310
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 2222 GCTGAAGAAGATGAATGCGGCTCTCGGGAAACAGATGAAGAAGACTAATGGAAAACCGAG 2281
Query 2311 GAGGAAAGTATCGCATAACCaaaaaaaCTCATC--AGAGTTGTGAGGCTTAAGACAGCTA 2368
|| |||||||| |||| ||| |||||||||||| |||||||||||||||||||||||||
Sbjct 2282 GATGAAAGTATTGCATGACC-AAAAAACTCATCATAGAGTTGTGAGGCTTAAGACAGCTA 2340
Query 2369 ATTTTGTGCTTGGCCATGGTTGCATGATCAGCCATTACTCAGCTCTGCGTGGTTTATAGA 2428
| ||| |||||||||||||||||||| |||||||| |||||||||||| ||| ||||||
Sbjct 2341 A-TTTATGCTTGGCCATGGTTGCATGTTCAGCCATAACTCAGCTCTGCCCGGTCTATAGA 2399
Query 2429 CCGGAGTACCGGGCCAGATTTATATATGACTGGTATTTAATGGGAAGTTACACATAATCT 2488
|||||||||| | ||||| || |||| | | | | | || ||| |||
Sbjct 2400 CCGGAGTACCAGACCAGA-TT-CATAT-A-T-G-----ACT-GG-TGTT-----TAA--- 2439
Query 2489 TCCCTAGGCACGGGCACTAACTGCTCCCTCCGGAGACATTGGATAAAGAGATGGGTCAAA 2548
| |||| |||||||||||||| || ||||||||||||||||||||||||||| ||
Sbjct 2440 ----T-GGCATGGGCACTAACTGCT-CC-GCGGAGACATTGGATAAAGAGATGGGTC-AA 2491
Query 2549 TGCTCGGTTAACGGAAGAAGGTGCTTGCCCTATTGAAGAACTGGATGGTTAGTTA----C 2604
|||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
Sbjct 2492 TGCTCGGTTAACGGAAGAAGGTGCTTGCCCTATTGAAGAACTGGGTGTTTAGTTAAATAC 2551
Query 2605 C-ATGGTTGGATAGAAATGTAAGAGAATTTGCCACACATCATGCAAGTTACTGGTGTAGC 2663
| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 2552 CCATGGTTGGATAGAAATGTAAGATAATTTGCCACACATAATGCAAGTTACTGGTGTAGC 2611
Query 2664 TCAAGCTACGAT 2675
||||||||||||
Sbjct 2612 TCAAGCTACGAT 2623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101243871210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5