BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17130.1
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480594 jgi|Araly1|480594|fgenesh2_kg.3__3295__AT2G17130.1 2152 0.0
Ahg944366 jgi|Araly1|944366|scaffold_700595.1 1029 0.0
> Ahg480594 jgi|Araly1|480594|fgenesh2_kg.3__3295__AT2G17130.1
Length=1402
Score = 2152 bits (1165), Expect = 0.0
Identities = 1327/1406 (94%), Gaps = 8/1406 (1%)
Strand=Plus/Plus
Query 28 TCTTCTTCCTCTGACGATCATTTTCAGAAGAATCTGATTCCGATCAAAATTGCAGAAGAA 87
||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||
Sbjct 1 TCTTCTTCCTCTGACGATCATCTTCTGAAGAATCTGATTCCGATCAAAATCACAGAAGAA 60
Query 88 GATGTCTCGCCAATCGTTTTCTCTACTGAAGAATCTTCGTAGCATCGCTTCCGGTTCCAA 147
|||||||||||||||| |||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 61 GATGTCTCGCCAATCGATTTCACTACTGAAGAATCTTCGTAGTATCGCCACCGGTTCCAA 120
Query 148 AATCCAGACCCGATCCGTGACTTACATGCCCAGACCCGGTGACGGAAAACCAAGACCAGT 207
||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||
Sbjct 121 AATTCAGACCCGATCCGTGACTTACATGCCCAGACCCGGCGACGGAAAACCACGACCGGT 180
Query 208 GACGTTAATCCCCGGAGACGGAGTTGGTCCGTTGGTAACAAACGCGGTTCAACAAGTGAT 267
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 AACGTTAATCCCCGGCGACGGAGTTGGTCCGTTGGTAACAAACGCGGTTGAACAAGTGAT 240
Query 268 GGAAGCGATGCACGCTCCGGTTTACTTCGAACCGTTCGAAGTTCATGGAGATATGAAGAG 327
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAAGCGATGCACGCACCGGTTTACTTCGAACCGTTCGAAGTTCATGGAGATATGAAGAG 300
Query 328 TTTACCTGAAGGATTGTTGGAATCGATTAAGAAGAACAAAGTTTGTTTGAAAGGTGGTCT 387
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 301 TTTACCTGAAGGATTATTGGAATCGATTAAGAAGAACAAAGTTTGTTTGAAAGGTGGGCT 360
Query 388 TAAGACTCCCGTCGGTGGTGGTGTGAGCTCTCTCAATGTTAATCTGAGAAAGGAGCTTGA 447
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 361 CAAGACTCCCGTCGGTGGTGGTGTGAGTTCTCTCAATGTTAATCTGAGAAAGGAGCTTGA 420
Query 448 TCTCTTTGCTTCTTTGGTCAACTGTTTCAATTTGCCTGGTTTAGCTTCTCGTCATGAGAA 507
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 421 TCTCTTCGCTTCTTTGGTCAACTGTTTCAATTTGCCTGGTTTAGCTTCGCGTCATGAGAA 480
Query 508 TGTTGATATTGTTGTGATTAGAGAGAACACTGAAGGTGAATATGCAGGTCTTGAACATGA 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGTTGATATTGTTGTGATTAGAGAGAACACTGAAGGTGAATATGCAGGTCTTGAACATGA 540
Query 568 AGTTGTTCCTGGTGTTGTTGAGAGCCTTAAGGTGATTACAAAGTTCTGTTCAGAGCGTAT 627
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 541 AGTTGTTCCTGGTGTTGTTGAGAGCCTTAAGGTGAATACAAAGTTCTGTTCGGAGCGTAT 600
Query 628 TGCAAAGTATGCGTTTGAGTATGCCTACTTGAACAACAGGAAGAAAGTTACAGCAGTGCA 687
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 601 TGCAAAGTATGCGTTTGAGTATGCTTACTTGAACAACAGGAAGAAAGTTACAGCAGTGCA 660
Query 688 CAAGGCTAATATCATGAAATTGGCTGATGGTTTGTTCTTGGAGTCTTGTCAAGAGGTTGC 747
||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 661 CAAGGCTAACATCATGAAACTGGCTGATGGTTTGTTCTTGGAATCTTGTCAAGAGGTTGC 720
Query 748 TAAGAAGTATCCAAGCATTGCTTACAATGAAATCATTGTTGATAATTGTTGTATGCAACT 807
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 721 TAAGAAGTATCCAAGCATTGCCTACAATGAAATCATTGTTGATAACTGTTGTATGCAACT 780
Query 808 TGTGGCTAGACCAGAGCAATTCGATGTCATGGTGACGCCTAATCTCTATGGTAATCTAGT 867
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 781 TGTAGCTAGACCAGAGCAATTCGATGTCATGGTGACGCCCAATCTCTATGGTAATCTTGT 840
Query 868 GGCAAACACTGCTGCTGGTATTGCTGGAGGTACTGGAGTCATGCCTGGAGGAAATGTTGG 927
||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 841 TGCAAATACTGCTGCTGGTATTGCTGGAGGCACTGGAGTCATGCCTGGAGGGAATGTTGG 900
Query 928 GGCGGAGTATGCGGTCTTTGAGCAAGGTGCATCAGCGGGAAACGTGGGGAAGGATACAAC 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GGCGGAGTATGCGGTCTTTGAGCAAGGTGCATCAGCGGGAAACGTGGGGAAGGATACAAC 960
Query 988 GGAAGAGCAAAAGAATGCAAACCCTGTGGCTTTGTTGCTGTCATCAGCCATGATGCTTAG 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GGAAGAGCAAAAGAATGCAAACCCTGTGGCTTTGTTGCTGTCATCAGCCATGATGCTTAG 1020
Query 1048 ACACCTTCAGTTCCCTTCTTTTGCTGACAGGCTTGAAACCGCTGTGAAGCGTGTTATCGC 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ACACCTTCAGTTCCCTTCTTTTGCTGACAGGCTTGAAACCGCTGTGAAGCGTGTTATCGC 1080
Query 1108 TGAAGGGAATTGTCGGACTGAAGATCTTGGTGGAAACAGTACCACTCAAGAGGTCGTTGA 1167
|||||| || || ||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 1081 TGAAGGAAAGTGCCGGACTGAAGATCTTGGCGGAAACAGTACGACACAAGAGGTCGTTGA 1140
Query 1168 CGCTGTCATTGCAAATTTGGATTGACTTGACAATTCCAACTTCGCTTGTGTAAAGCATCA 1227
||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||
Sbjct 1141 CGCTGTCATTGCAAATTTGGATTGACTTGACAATTCCAACTTCTCTTGCGTAAT-CATCA 1199
Query 1228 GTCACACGTCGGTATGATTCACGCTTACTGGAAAATACTTCT-AGTTCCCACATTCTTTC 1286
||||||||||||||||||||| ||||| ||||| ||||| | | || |||||||||||
Sbjct 1200 ATCACACGTCGGTATGATTCACACTTACCGGAAA-TACTTGTCATTTTTCACATTCTTTC 1258
Query 1287 GAGATAACTCGAATTGGGATTTCAGATTTCGAGAAAAATAACATA-TGGttt-ttt-gtt 1343
||||||||||||||||| |||| | ||||||||||||||||||| | ||| ||| |||
Sbjct 1259 GAGATAACTCGAATTGGAATTTAAAATTTCGAGAAAAATAACATGGTTTTTTATTTTGTT 1318
Query 1344 ttgtttttcttctttttGTTCATGTAATATGCAAAGTGCAAAGTGAAAACTGCCTCAGAG 1403
||||||| |||||||||||||||||| ||||||||||||||| || | | ||||||
Sbjct 1319 TTGTTTTCCTTCTTTTTGTTCATGTAGTATGCAAAGTGCAAA-TGCCT-CAGTTTCAGAG 1376
Query 1404 CATTATTTTTTGAATAATGAAAATTA 1429
|| || ||||||||||||||||||||
Sbjct 1377 CAGTACTTTTTGAATAATGAAAATTA 1402
> Ahg944366 jgi|Araly1|944366|scaffold_700595.1
Length=1240
Score = 1029 bits (557), Expect = 0.0
Identities = 957/1148 (83%), Gaps = 36/1148 (3%)
Strand=Plus/Plus
Query 72 CAAAATTGCAGAAG--AAGATGTCTCGCCA-ATCGTTTTCTCTACTGAAGAATCTTCG-T 127
||||||||||| || || |||||||| || |||| | |||| || ||||||| | | |
Sbjct 4 CAAAATTGCAG-AGCAAAAATGTCTCG-CAGATCGCTAACTCTCCTCAAGAATC-TAGCT 60
Query 128 AGCATCGCTTCCGGTTCCA-AAATCCAGACCCGATCCGTGACTTACATGCCCAGACCCGG 186
|| | ||| ||| | || | || ||||||||||||||||||||||| ||||||||
Sbjct 61 AGAAACGCGAACGGAT-CAGGTTTTCAAACCCGATCCGTGACTTACATGCCTAGACCCGG 119
Query 187 TGACGGAAAACCAAGAC-CAGTGACGTTAATCCCCGGAGACGGAGTTGGTCCGT-TGGTA 244
||||||| |||| | | |||||||| | || || ||||| ||| | || || | |||||
Sbjct 120 TGACGGAGCACCACG-CGCAGTGACGCTGATTCCAGGAGATGGAATCGGACC-TCTGGTA 177
Query 245 ACAAACGCGGTTCAACAAGTGATGGAAGCGATGCACGCTCCGGT-TTACTTCGA-ACCGT 302
|| ||||| || |||| |||||||||||||||||||| ||| | || |||||| | ||
Sbjct 178 ACGAACGCCGTGGAACAGGTGATGGAAGCGATGCACGCGCCGATCTT-CTTCGAGA-AGT 235
Query 303 TCGAAGTTCATGGAGATATGAAG-AGTTTACCTGAAGG-ATTGTTGGAATCGATTAA-GA 359
||| ||||| ||||| ||| || || | || | || | || |||| |||| ||| ||
Sbjct 236 ACGATGTTCACGGAGAAATG-AGCCGTGTGCC-GGCGGAAGTGATGGAGTCGA-TAAGGA 292
Query 360 AGAACAAAGTTTGTTTGAAAGGTGGTCTTAAGACTCCCGTCGGTGGTGGTGTGAGCTCTC 419
|||| || ||||||||||||||||| ||||||||||| || ||||||||||| || || |
Sbjct 293 AGAATAAGGTTTGTTTGAAAGGTGGGCTTAAGACTCCTGTTGGTGGTGGTGTTAGTTCGC 352
Query 420 TCAATGTTAATCTGA-GAAAGGAGCTTGATCTCTTTGCTTCTTTGGTCAACTGTTTCAAT 478
| || || | || | |||| |||||||| |||||||| ||| ||||||||||||| |||
Sbjct 353 TTAACGTCCAGCTTAGGAAA-GAGCTTGACCTCTTTGCGTCTCTGGTCAACTGTTTTAAT 411
Query 479 TTGCCTGGTTTAGCTTCTCGTCATGAGAATGTTGATATTGTTGTGATTAGAGAGAACACT 538
|||||||||||| || |||| ||||| |||||||| || ||||| || ||||||||||||
Sbjct 412 TTGCCTGGTTTACCTACTCGCCATGAAAATGTTGACATCGTTGTCATCAGAGAGAACACT 471
Query 539 GAAGGTGAATATGCAGGTCTTGAACATGAAGTTGTTCCTGGTGTTGTTGAGAGCCTTAAG 598
|||||||| ||||| || ||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 472 GAAGGTGAGTATGCGGGGCTTGAGCATGAGGTTGTTCCTGGTGTCGTTGAGAGCCTTAAG 531
Query 599 GTGATTACAAAGTTCTGTTCAGAGCGTATTGCAAAGTATGCGTTTGAGTATGCCTACTTG 658
||||| || ||||||||||| ||||||||||| |||||||| ||||||||||||||| ||
Sbjct 532 GTGATCACGAAGTTCTGTTCCGAGCGTATTGCCAAGTATGCTTTTGAGTATGCCTACCTG 591
Query 659 AACAACAGGAAGAAAGTTACAGCAGTGCACAAGGCTAATATCATGAAA-TTGGCTGATGG 717
||||||||||||||||||||||| ||||| |||||||| ||||||||| || || || ||
Sbjct 592 AACAACAGGAAGAAAGTTACAGCGGTGCATAAGGCTAACATCATGAAACTT-GCGGACGG 650
Query 718 TTTGTTCTTGGAGTCTTGTCAAGAGGTTGCTAAGAAGTATCCAAGCATTGCTTACAATGA 777
|||||||||||| ||||||| ||||||||||| |||||||| ||||| | ||||||||
Sbjct 651 TTTGTTCTTGGAATCTTGTCGGGAGGTTGCTAAAAAGTATCCGAGCATCACCTACAATGA 710
Query 778 AATCATTGTTGATAATTGTTGTATGCAACTTGTGGCTAGACCAGAGCAATTCGATGTCAT 837
||||||||||||||| || |||||||||||||| || | |||||||||||||||||||||
Sbjct 711 AATCATTGTTGATAACTGCTGTATGCAACTTGTAGCGAAACCAGAGCAATTCGATGTCAT 770
Query 838 GGTGACGCCTAATCTCTATGGTAATCTAGTGGCAAACACTGCTGCTGGTATTGCTGGAGG 897
||| ||||| ||||||||||| ||| |||| |||||||||||||||||||||||||||||
Sbjct 771 GGTAACGCCCAATCTCTATGGGAATTTAGTTGCAAACACTGCTGCTGGTATTGCTGGAGG 830
Query 898 TACTGGAGTCATGCCTGGAGGAAATGTTGGGGCGGAGTATGCGGTCTTTGAGCAAGGTGC 957
|| ||||||||||||||||||||||||||||| || ||||||| || |||||||||||
Sbjct 831 CACAGGAGTCATGCCTGGAGGAAATGTTGGGGCTGACCATGCGGTATTCGAGCAAGGTGC 890
Query 958 ATCAGCGGGAAACGTGGGGAAGGATACA-ACGGAAGAGCAAAAGAATGCAAACCCTGTGG 1016
|||||| ||||| || ||||| |||| | | | | | |||| || |||||||| ||||
Sbjct 891 ATCAGCAGGAAATGTTGGGAAAGATA-AGATAGTATTGGAAAACAAAGCAAACCCAGTGG 949
Query 1017 CTTTG-TTGCTGTCATCAGCCATGATGCTTAGACACCTTCAGTTCCCTTCTTTTGCTGAC 1075
| ||| || || |||||||| |||||||| |||||||||||||| ||||| |||||||||
Sbjct 950 CATTGCTT-CTCTCATCAGCGATGATGCTAAGACACCTTCAGTTTCCTTCATTTGCTGAC 1008
Query 1076 AGGCTTGAAACCGCTGTGAAGCGTGTTATCGCTGAAGGGAATTGTCGGACTGAA-GATCT 1134
|||||||||| || |||||| || ||||||||||| || || ||||| ||| |||||
Sbjct 1009 CGGCTTGAAACAGCAGTGAAGAAAGTCATCGCTGAAGGAAAGTGCCGGAC-GAAAGATCT 1067
Query 1135 TGGTGGAAACA-GTACCACTCAAGAGGTCGTTGACGCTGTCATTGCAAATTTGGATTGAC 1193
|||||| | || | || ||||||||||||||||| || ||||||||||| || || ||||
Sbjct 1068 TGGTGGCA-CAAGCACGACTCAAGAGGTCGTTGATGCGGTCATTGCAAAATTAGACTGAC 1126
Query 1194 TT-GACAA 1200
|| |||||
Sbjct 1127 TTTGACAA 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53859606430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5