BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17150.1
Length=3183
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906541 jgi|Araly1|906541|Al_scaffold_0003_3669 4279 0.0
Ahg491122 jgi|Araly1|491122|fgenesh2_kg.7__555__AT4G35270.1 826 0.0
> Ahg906541 jgi|Araly1|906541|Al_scaffold_0003_3669
Length=2745
Score = 4279 bits (2317), Expect = 0.0
Identities = 2613/2753 (95%), Gaps = 31/2753 (1%)
Strand=Plus/Plus
Query 246 ATGGAAGATGATGGTGGTAGTGATGGAGGCGAAGGAAATGGTGGGTTTTCACCTAATTCT 305
|||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGAAGATGATGGTGGTGGCGATGGAGGCGAAGGAAATGGTGGGTTTTCGCCTAATTCT 60
Query 306 AGCTTTGGGGCATTCGCTGACACTGCCATGGATTTGGATTTCATGGATGAACTCTTGTTT 365
||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 61 AGCTTTGGGGCATTCTCTGACACGGCCATGGATTTGGATTTCATGGATGAGCTCTTGTTT 120
Query 366 GATGGATGTTGGCTAGAGACAACAGATAGTAAGAGCTTGAAGCAGACAGAACAATCTCCT 425
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 121 GATGGATGTTGGCTAGAGACAACAGATAGTAAGAGCTTGAACCAGACAGAACAATCTGCT 180
Query 426 TCAGCTTCTACCGCCATGAATGACAATAGCCCTTTCCTCTGCTTTGGTGAGAATCCATCT 485
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 TCAGCTTCTACCGCCATGAATGACAATAGCCCTTTCCTCTGCTTTGGTGAGAACCCATCT 240
Query 486 CAAGATAATTTCTCTAATGAAGAAACAGAGAGAATG-----T--TT--CC---T---CAG 530
|||||||||||||||||||||||||||||||||||| | || || | |||
Sbjct 241 CAAGATAATTTCTCTAATGAAGAAACAGAGAGAATGCTTCCTCATTCACCTAGTAACCAG 300
Query 531 GCTGAAAAGTTTCTCCTAGAAGAAGCTGAGGTGGGAAAAAGTTGGTGGATTGCTCCAAGT 590
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 301 GCTGAAAAGTTTCTCCTCGAAGAAGCTGAGGTGGGAAAAAGTTGGTGGATTGCCCCAAGA 360
Query 591 GCAAGTGAAGGCCCGTCTTCATCTGTGAAGGAGAGGCTACTACAAGCTATTAGTGGTCTT 650
||||||||||| || |||||||||||||||||||| ||| ||| ||||||||||||||||
Sbjct 361 GCAAGTGAAGGACCTTCTTCATCTGTGAAGGAGAGACTATTACGAGCTATTAGTGGTCTT 420
Query 651 AACGAGGCGGTGCAAGATAAGGACTTCTTGGTTCAGATATGGGTGCCAATTCAGCAGGAA 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AACGAGGCGGTGCAAGATAAGGACTTCTTGGTTCAGATATGGGTGCCAATTCAGCAGGAA 480
Query 711 GGGAAGAGCTTTCTTACTACTTGGGCTCAGCCACATTTATTCAACCAAGAATACTCCAGC 770
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 GGGAAGAGCTTTCTGACCACTTGGGCTCAGCCACATTTATTTAACCAAGAATACTCCAGC 540
Query 771 CTTGCAGAATACAGACATGTTTCAGAGACTTATAATTTCCCGGCTGATGAGGGTATGAAA 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTTGCAGAATACAGACATGTTTCAGAGACTTATAATTTCCCGGCTGATGAGGGTATGAAA 600
Query 831 GATTTTGTGGGTCTTCCCGGTCGTGTTTTCTTGCAGAAGTTTCCTGAGTGGACTCCTGAT 890
|| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 601 GAATTTGTGGGTCTTCCTGGTCGTGTTTTCTTGCAGAAGTTGCCTGAGTGGACTCCTGAT 660
Query 891 GTGCGTTTCTTTAGAAGAGATGAATATCCACGCATCAAAGAAGCACAAAAGTGTGATGTT 950
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTGCGGTTCTTTAGAAGAGATGAATATCCACGCATCAAAGAAGCACAAAAGTGTGATGTT 720
Query 951 CGTGGTTCACTTGCCCTTCCTGTTTTCGAAAGAGGTAGTGGGACTTGTTTGGGTGTTGTT 1010
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 721 CGTGGGTCACTTGCCCTTCCTGTTTTCGAAAGAGGTAGTGGGATTTGTTTGGGTGTTGTT 780
Query 1011 GAGATCGTCACAACAACTCAGAAGATGAATTACCGGCAAGAACTTGAGAAGATGTGTAAA 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GAGATCGTCACAACAACTCAGAAGATGAATTACCGGCAAGAACTTGAGAAGATGTGTAAA 840
Query 1071 GCTCTTGAGGCCGTCGATCTAAGGAGTTCAAGTAACTTGAACACTCCAAGCTCTGAGTTT 1130
||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||
Sbjct 841 GCTCTTGAGGCCGTCAATCTAAGGAGTTCAAGTAACTTGAACCCACCAAGCTCTGAGTTT 900
Query 1131 CTGCAGGTCTATAGTGATTTCTACTGTGCTGCATTACCTGAAATAAAAGATTTCCTGGCC 1190
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 901 CTGCAGGTCTATAGTGATTTCTACTGTGCTGCATTACCTGAAATAAAAGATTTCTTGGCC 960
Query 1191 ACAATCTGCAGATCATATGATTTTCCTCTAGCTTTGTCATGGGCGCCGTGTGCTCGGCAA 1250
||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 961 ACAGTCTGCAGATCATATGATTTGCCTCTAGCTTTGTCATGGGCTCCGTGTGCTCGGCAA 1020
Query 1251 GGGAAAGTTGGTTCCCGACATTCTGATGAGAACTTCTCTGAGTGTGTTTCAACAATCGAT 1310
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1021 GGGAAAGTTGGCTCCCGACATTCTGATGAGAACTTCTCTCAGTGTGTTTCAACAATCGAT 1080
Query 1311 TCTGCTTGTTCTGTCCCCGACGAACAGAGCAAAAGTTTTTGGGAGGCATGCTCTGAACAC 1370
|||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1081 TCTGCTTGCTCTGTCCCTGACGAACAGAGCAAAATTTTTTGGGAGGCATGCTCTGAACAC 1140
Query 1371 CATCTGCTCCAGGGGGAAGGCATTGTTGGGAAAGCATTTGAA-GCCACCAAACTCTTTTT 1429
||| |||||||||||||||||||||| ||||||||| || || ||||| ||||| |||||
Sbjct 1141 CATTTGCTCCAGGGGGAAGGCATTGTAGGGAAAGCA-TTCAAGGCCACTAAACTGTTTTT 1199
Query 1430 TGTGCCCGAAGTGGCCACATTTAGCAAGACTAACTACCCCCTTGCACACCACGCCAAGAT 1489
||||||||||||| ||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 1200 TGTGCCCGAAGTGATCACATTTAGCAAGACCAACTATCCTCTTGCACACCACGCCAAGAT 1259
Query 1490 ATCTGGACTACATGCTGCTTTAGCAGTTCCATTAAAGAGCAAATCTGGTTTGGTTGAGTT 1549
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1260 ATCTGGACTACATGCTGCTTTAGCAGTCCCATTAAAAAGCAAATCTGGTTTGGTTGAGTT 1319
Query 1550 TGTGTTGGAATTTTTCTTTCCGAAAGCATGCCTTGACACTGAAGCGCAACAGGAAATGCT 1609
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TGTGTTGGAATTTTTCTTTCCAAAAGCATGCCTTGACACTGAAGCGCAACAGGAAATGCT 1379
Query 1610 CAAGTCACTATGTGTGACACTGCAGCAAGATTTCAGGAGTTCAAATCTTTTCA-T--CAA 1666
||||||||||| |||||| |||||||||||||||||||||||||||||| ||| | |||
Sbjct 1380 CAAGTCACTATCTGTGACGCTGCAGCAAGATTTCAGGAGTTCAAATCTTGTCATTGACAA 1439
Query 1667 AGACCTAG-AGTTAGAAGTCGTATTACCTGTAAGAGAGACAATGCTCTTCTCAGAAAACC 1725
|||||| | |||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1440 AGACCT-GAAGTTAGAAGTCGTATTGCCTGTTAGAGAGACAATGCTCTTCTCAGAAAACC 1498
Query 1726 TGCTATGTGGAGCAGAAACCGTAGAGTCGTTGACAGAAATTCAAATGCAAGAATCCTCAT 1785
|||| ||||||||||||||| |||||| |||||||||||| ||||||||||||||||||
Sbjct 1499 CGCTAAGTGGAGCAGAAACCGCAGAGTCTTTGACAGAAATTGAAATGCAAGAATCCTCAT 1558
Query 1786 GGATCGCCCACATGATAAAGGCAAACGAGAAGGGTAAAGATGTATCACTTTCTTGGGAGT 1845
||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 GGATCTCCCACATGCTAATGGCAAACGAGAAGGGTAAAGATGTATCACTTTCTTGGGAGT 1618
Query 1846 ACCAGAAAGAAGATCCTAAAGAGCTCTCATCTGGCCGGGAGAACAGTCAGCTTGATCCAG 1905
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1619 ACCAGAAAGAAGATCCTAAAGAGCTCTCATCTGGCCGGGAAAACACTCAGCTTGATCCAG 1678
Query 1906 TCCCCAATAATGTTCCTTTAGAAGCTGAGCAATTACAGCAAGCATCAACTCCAGGACTCA 1965
|||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1679 TCCCAAATAATGTTCCTTTAGAAGCTGAGCAATTTCAGCAAGCATCAACTTCAGGACTCA 1738
Query 1966 GAGTCGACATC-GGTCCAAGCACAGAATCAGCTTCGACTGGTGGGGGAAATATGTTAAGC 2024
|||||||| | ||||||||||| |||||| |||||| ||||||||||||||||||| ||
Sbjct 1739 AAGTCGACA-CAGGTCCAAGCACTGAATCATCTTCGATTGGTGGGGGAAATATGTTAGGC 1797
Query 2025 AGTAGGAGACCAGGGGAGaaa-aaaaGAGCAAAAACAGAAAAGACCATTGGCTTGGAGGT 2083
||||||| ||||||||| ||| | |||| |||||||||||||||||||||||||||||||
Sbjct 1798 AGTAGGAAACCAGGGGA-AAAGAGAAGAACAAAAACAGAAAAGACCATTGGCTTGGAGGT 1856
Query 2084 TCTTCGACAATACTTTGCTGGAAGCCTCAAGGATGCAGCCAAGAGCATTGGTGTTTGTCC 2143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1857 TCTTCGACAATACTTTGCTGGAAGCCTCAAGGATGCAGCCAAGAGCATTGGTGTTTGTCC 1916
Query 2144 AACTACCTTGAAAAGGATATGCAGGCAACATGGAATAATGCGATGGCCCTCCCGAAAAAT 2203
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1917 AACTACCTTGAAAAGGATATGTAGGCAACATGGGATAATGCGATGGCCCTCCCGAAAAAT 1976
Query 2204 CAAGAAGGTTGGGCATTCGTTGAAGAAACTCCAACTAGTTATGGACTCTGTCCAAGGTGC 2263
||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 1977 CAAGAAGGTTGGGCATTCGTTAAAGAAACTCCAACTTGTTATGGACTCTGTTCAAGGTGC 2036
Query 2264 GCAGGGCTCTATCCAACTCGATTCATTCTATACAAGCTTCCCAGAGTTGAACTCCCCAAA 2323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2037 GCAGGGCTCTATCCAACTCGATTCATTCTATACAAGCTTCCCAGAGTTGAACTCCCCAAA 2096
Query 2324 TATGTCTAGCAATGGCCCTTCCTTGAAGAGTAATGAACAGCCAAGTCATTTGAATGCTCA 2383
||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 2097 TATGTCTAGTAATGGCCCTTCCTTGAAGAATAATGAACAGTCAAGTCATTTGAATGCTCA 2156
Query 2384 AACCGATAATGGTATTATGGCAGAGGAAAACCCCAGGTCACCATCATCTTCTTGCAGCAA 2443
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2157 AACCGATAATGGTATTATGGCAGAGGA---CCCCAGGTCACCATCATCTTCTTGCAGCAA 2213
Query 2444 GAGCTCTGGTTCAAGCAACAATAATGAGAATACTGGAAACATTCTAGTTGCTGAGGATGC 2503
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 2214 GAGCTCTGGTTCAAGCAACAATAATGAGAATACTGCAAACATTCTAGTTGCTGAGGAAGC 2273
Query 2504 TGATGCGGTGTTAAAGAGAGCTCATAGCGAAGCACAACTGCATAATGTGAATCAGGAGGA 2563
|||||| |||||||||||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct 2274 TGATGCAGTGTTAAAGAGAGCTCATTGTGAAGCGCAACTGCATAATGTGAATCAGGAGGA 2333
Query 2564 AACAAAATGTCTTGCAAGAACCCAGAGCCATAAAACATTCAAGGAGCCTCTTGTTCTTGA 2623
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2334 AACAAAATGTCTTGCAAGAACCCAGAGCCATAAAACATTCAAGGAGCCTCCTGTTCTTGA 2393
Query 2624 TAATTCATCTCCATTAACAGGTAGTAGCAACACGAGTTTAAGAGCTAGAGGTGCCATCAA 2683
||||||||||||||| ||||||||||||||| ||| ||||||||| |||||||||||||
Sbjct 2394 AAATTCATCTCCATTACCAGGTAGTAGCAACAAGAGCTTAAGAGCTGGAGGTGCCATCAA 2453
Query 2684 AGTGAAAGCGACATTTGGTGAGGCCAGAATACGGTTTACCTTACTCCCGAGTTGGGGCTT 2743
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 2454 AGTGAAAGCGACATTTGGTGAGGCCAGAATACGGTTTACCTTGCTCCCGAGTTGTGGCTT 2513
Query 2744 C-GCAGAGCTGAAGCAAGAGATTGCTAGGCGTTTCAACATAGATGACATTTCCTGGTTTG 2802
| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2514 CAG-AGAGCTGCAGCAAGAGATTGCTAGGCGTTTCAACATAGATGACATTTCCTGGTTTG 2572
Query 2803 ACCTTAAGTACCTGGATGATGATAAGGAGTGGGTTCTTCTGACATGTGAAGCGGATCTCG 2862
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 2573 ATCTTAAGTACCTGGATGATGATAAGGAGTGGGTTCTTCTGACATGTGAAGCAGATCTTG 2632
Query 2863 TGGAATGCATTGACATATATAGATTAACACAGACCCACACAATTAAAATAAGTCTGAACG 2922
|||||||||| ||||||| ||||||||||||||| |||||||| ||||||||||||||||
Sbjct 2633 TGGAATGCATCGACATATTTAGATTAACACAGACTCACACAATCAAAATAAGTCTGAACG 2692
Query 2923 AAGCTTCTCAAGTCAAGCTAAGTGGTTCTTTTGGCAACACTGGTCTTTCCTGA 2975
|||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 2693 AAGCTTCTCAAGTCAAGCTAAGTGGTTCTTTTGGTAGCACTGGTCTTTCCTGA 2745
> Ahg491122 jgi|Araly1|491122|fgenesh2_kg.7__555__AT4G35270.1
Length=3255
Score = 826 bits (447), Expect = 0.0
Identities = 970/1213 (80%), Gaps = 74/1213 (6%)
Strand=Plus/Plus
Query 1195 TCTGCAGATCATATGATTTTCCTCTAGCTTTGTCATGGGCGCCGTGTGCTCGGCAAGGGA 1254
||||||||| |||||| | ||||| ||||| | ||||| ||||||||||||||||| |
Sbjct 1070 TCTGCAGATTATATGACCTGCCTCTGGCTTTAACGTGGGCACCGTGTGCTCGGCAAGGCA 1129
Query 1255 AAGTTGGTTCCCGACATTCTGATGAGAACTTCTCTGAGTGTGTTTCAACAATCGATTCTG 1314
||||||| ||||| |||||||||||||||||| |||||||||||||||| | ||| ||
Sbjct 1130 AAGTTGGATCCCGCCATTCTGATGAGAACTTCGCTGAGTGTGTTTCAACTGTTGATGATG 1189
Query 1315 CTTG-TTCTGTCCCCGA-CGAACAGAG-CAAAAGTTT-TTGGGAGGCATGCTCTGAACAC 1370
|||| | |||||| || | | ||||| | | ||| | |||||||| |||||||||
Sbjct 1190 CTTGCAT-TGTCCCTGATC-ATCAGAGTCGTCA-TTTCCT-AGAGGCATGTTCTGAACAC 1245
Query 1371 CATCTGCTCCAGGGGGAAGGCATTGTTGGG-AAAGCATTTGAAGCCACCAAACTCTTTTT 1429
|||||||| || ||||||||||||| |||| |||||||| |||| |||||||| |||||
Sbjct 1246 CATCTGCTTCAAGGGGAAGGCATTG-TGGGAAAAGCATTCAAAGCAACCAAACTGTTTTT 1304
Query 1430 TGTGCCCGAAGTGGCCACATTTAGCAAGACTAACTACCCCCTTGCACACCACGCCAAGAT 1489
||||||||||| |||| ||||||||||| |||||||| ||||||||||| || |||||
Sbjct 1305 CGTGCCCGAAGTAACCACTTTTAGCAAGACCAACTACCCTCTTGCACACCATGCTAAGAT 1364
Query 1490 ATCTGGACTACATGCTGCTTTAGCAGTTCCATT-AAAGAGCAAA-TC--TGGTTTGGTTG 1545
|| || |||||||||||| ||||||| || || ||| | |||| || | ||| |||||
Sbjct 1365 CTCAGGTCTACATGCTGCTCTAGCAGTCCCGTTGAAA-AACAAATTCAATAGTTCGGTTG 1423
Query 1546 AGTTTGTGTTGGAATTTTTCTTTCCGAAAGCATGCCTTGACACTGAAGCGCAACAGGAAA 1605
|||||||||| || ||||||||||| ||||| ||||||||||| ||||||||||| ||||
Sbjct 1424 AGTTTGTGTTCGAGTTTTTCTTTCCAAAAGCTTGCCTTGACACCGAAGCGCAACAAGAAA 1483
Query 1606 TGCTCAAGTCACTATGTGTGACACTGCAGCAAGATTTCAGGAG-TTCAAATCTTTTCA-T 1663
||||||||||||| | || ||| || ||||| ||||||||||| || ||||||||||| |
Sbjct 1484 TGCTCAAGTCACTGTCTGCGACCCTTCAGCAGGATTTCAGGAGCTT-AAATCTTTTCATT 1542
Query 1664 --CAAAGACCTAGAGTTAGAAGTCGTATTACCTGTAAGAGA-GACAAT-GCTCTTCT-CA 1718
||||| || ||| ||||||| ||||| || || ||||| || | | | | || | ||
Sbjct 1543 GATAAAGAGCTTGAGCTAGAAGTTGTATTTCCCGTTAGAGAGGA-AGTAG-T-TTTTGCA 1599
Query 1719 GAAAACCTGCTATGTGGA-GCAGAAACCGTAGAG----T-----C---G---TT-GACAG 1761
|| |||| || | | | |||| ||||| |||| | | | || || ||
Sbjct 1600 GAGAACCCACT-TCTTAACGCAGGAACCGGAGAGAATATGAAACCTTTGCCTTTGGA-AG 1657
Query 1762 AAAT-TCAAATGCAAGAATCCTCATGGATCGCCCACATGATAAAGGCAAACGAGAAGGGT 1820
| || || | | |||| || ||||||||| | ||||||||||||||||| ||||| |||
Sbjct 1658 ATATGTCTCA-GGAAGATTCTTCATGGATCTCACACATGATAAAGGCAAATGAGAAAGGT 1716
Query 1821 AAAGATGTATCACTTTCTTGGGAGTACCAGAAAGAAGATCC--TA-AAGAG---CT-C-T 1872
|||| || ||||||||||||||||| || |||||||| || | ||||| | | |
Sbjct 1717 AAAGGCGTGTCACTTTCTTGGGAGTATCAAAAAGAAGAGCCAAAAGAAGAGTTTATGCTT 1776
Query 1873 -CATCTGGCCGGGAGAACAGTCAGCTT-GATCCAGTCCCCAATAATGTTCCTTT-AGAAG 1929
||||||| |||| |||| |||| || | || || | |||||| || |||| |||||
Sbjct 1777 ACATCTGGATGGGATAACAATCAGATTGGTTCTGGT-CACAATAA-CTTTCTTTCAGAAG 1834
Query 1930 CTGAGCAATTACAGCAA-GCATCAACTCCAGGACTCAGAGTCGACATCGG-TCCAAGCAC 1987
||||||| || ||| || | |||| | ||||||||||| ||||||| || ||||||
Sbjct 1835 CTGAGCAGTTTCAG-AAGGTGTCAAATTCAGGACTCAGAATCGACAT-GGTTCCAAGTTT 1892
Query 1988 AGAATCAGCTTCGACT-G-G-TG-GGGG-A-A-ATATGTTAAGCAGTAGGAGACCAGGGG 2040
||||||||||| | | | || |||| | | || | || ||||||| |||||||| |
Sbjct 1893 TGAATCAGCTTCCTTTGGTGTTGTGGGGCAGACAT-TACTAGGCAGTAGAAGACCAGGTG 1951
Query 2041 AGaaaaaaaGAGCAAAAACAGAAAAGACCATTGGCTTGGAGGTTCTTCGACAATACTTTG 2100
|||| | |||| |||||||||||||||| ||||| || || |||||||||||||||||||
Sbjct 1952 AGAAGAGAAGAACAAAAACAGAAAAGACAATTGGTTTAGAAGTTCTTCGACAATACTTTG 2011
Query 2101 CTGGAAGCCTCAAGGATGCAGCCAAGAGCATTGGTGTTTGTCCAACTACCTTGAAAAGGA 2160
| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 2012 CAGGAAGCCTCAAAGATGCAGCTAAGAGCATTGGTGTTTGTCCAACTACCTTGAAAAGAA 2071
Query 2161 TATGCAGGCAACATGGAATAATGCGATGGCCCTCCCGAAAAATCAAGAAGGTTGGGCATT 2220
||||||| ||||| || |||| || ||||| || || || |||||||| || |||||||
Sbjct 2072 TATGCAGACAACACGGGATAACACGGTGGCCTTCTCGGAAGATCAAGAAAGTGGGGCATT 2131
Query 2221 CGTTGAAGAAACTCCAACTAGTTATGGACTCTGTCCAAGGTGCGCAGGGCTCTATCCAAC 2280
| || |||||||||||||| ||||| |||||||| ||||||| || |||||||| ||||
Sbjct 2132 CATTAAAGAAACTCCAACTTGTTATAGACTCTGTTCAAGGTGTTCAAGGCTCTATTCAAC 2191
Query 2281 TCGATTCATTCTATACAAGCTTCCCAGAGTTGAA-CTCCCCAAATATGTCTAGCAATGGC 2339
| ||||||||||||||||| |||||||| || || ||||||| |||||||| | | ||||
Sbjct 2192 TTGATTCATTCTATACAAGTTTCCCAGAATT-AAGCTCCCCACATATGTCTGGTACTGGC 2250
Query 2340 CCTTCCTTGAAGA 2352
||||||| ||||
Sbjct 2251 ACTTCCTTCAAGA 2263
Score = 333 bits (180), Expect = 5e-90
Identities = 375/466 (80%), Gaps = 26/466 (6%)
Strand=Plus/Plus
Query 2517 AAGAGAGCTCATAGCGAAGCACA-ACTGCATAATGTGAATCAGGAGGAAACAAAATGT-C 2574
|||||||||| ||||| || | |||||||| |||||||||| ||||| ||| || |
Sbjct 2461 AAGAGAGCTCGTAGCG-AGGTGAGACTGCATACCATGAATCAGGATGAAAC-AAA-GTCC 2517
Query 2575 TTG-CAAGAACCCAGAGCCATAAAACATTCAAG-GAGCCTCTTGTTCTT-GATAATTCAT 2631
|| | ||||||| |||||| ||||||||| || || | || | || || || ||| ||
Sbjct 2518 CTGTCTAGAACCCTGAGCCACAAAACATTC-AGTGAACATCCTCTT-TTCGAAAATCCAC 2575
Query 2632 CTCCATTAACAGG-TAGTAGCAACACG-AGTTTAAGAGCTAGAGGTGCCATC-AAAGTGA 2688
||| || || || ||||| | || | |||| || |||| |||| ||| || |||||||
Sbjct 2576 CTCGGTT-ACCGGAGAGTAGTAGCAGGAAGTTGAA-AGCTGGAGGGGCC-TCAAAAGTGA 2632
Query 2689 AAGCGACATTTGGTGAGGCCAGAA-TACGGTTTACCTTACTCCCGAGTTGGGGCTTC-GC 2746
|||| |||||||||||||||| || |||||||||| || ||||| | ||||||||| |
Sbjct 2633 AAGCCACATTTGGTGAGGCCA-AAGTACGGTTTACTTTGCTCCCTACATGGGGCTTCAG- 2690
Query 2747 AGAGCTGAAGCAAGAGATTGCTAGGCGTTTCAACATAGATGACATTTC-CTGGTTTGACC 2805
|||| || |||| ||||||||||||||||| ||||||||| | ||| | | ||||| |
Sbjct 2691 AGAGTTGCAGCATGAGATTGCTAGGCGTTTTAACATAGATAATATTGCAC-CCTTTGATC 2749
Query 2806 TTAAGTACCTGGATGATGATAAGGAGTGGGTTCTTCTGACATGTGAAGCGGATCTCGTGG 2865
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||
Sbjct 2750 TTAAGTACCTGGATGATGACAAGGAATGGGTTCTTCTGACATGTGAAGCGGATCTCGAGG 2809
Query 2866 AATGCATTGACATATATAGATTAACACAGACCCACACAATTAAAATAAGTC-TGAACGAA 2924
|||| || ||||| ||||||| | |||||| || ||| || || ||||| | | | |||
Sbjct 2810 AATGTATCGACATTTATAGATCATCACAGAGCCGCACGATCAAGATAAG-CGTTCATGAA 2868
Query 2925 GCTTCTCAAGTCAAGCTAAGTGGTTCTTTTGGCAACA-CTGGTCTT 2969
|||||||||||||||||| | ||||||||||| | || | ||||||
Sbjct 2869 GCTTCTCAAGTCAAGCTAGGAGGTTCTTTTGGTAGCATC-GGTCTT 2913
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120250903465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5