BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G17170.1 Length=987 Score E Sequences producing significant alignments: (Bits) Value Ahg480599 jgi|Araly1|480599|fgenesh2_kg.3__3300__AT2G17170.1 1238 0.0 Ahg343326 jgi|Araly1|343326|fgenesh1_pg.C_scaffold_3003089 375 2e-103 Ahg339129 jgi|Araly1|339129|fgenesh1_pg.C_scaffold_2001228 182 6e-45 > Ahg480599 jgi|Araly1|480599|fgenesh2_kg.3__3300__AT2G17170.1 Length=837 Score = 1238 bits (670), Expect = 0.0 Identities = 776/828 (94%), Gaps = 4/828 (0%) Strand=Plus/Plus Query 81 CAAGAACGACGGATTCGTCAACTGGCCTGTCACAGAGTTCTTCCTCTCCGATATCACCAC 140 |||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||| | Sbjct 12 CAAGAACGACGGATTCGTCAACTGGCCTTTCATAGAGTTCTTCCTCTCCGATCTCACGAA 71 Query 141 GGCGACCAATAACTTCAGTTCCGACGAGATCATATCAGAGAACGCAGAAGAATCTTCCAA 200 ||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 72 GGCGACCAAGAACTTCAGTACCGACGAGATCATATCAGAGAACGCAGAAGAATCCTCCAA 131 Query 201 TGTTGTCTACAAAGGTTGTTTATTAGAGAATCTTGGCTTCGTAGCTGTCAAGAGATTCAA 260 | |||||||||| ||| |||||| |||||||||||| ||||| ||||||||||||||||| Sbjct 132 TTTTGTCTACAAGGGTCGTTTATCAGAGAATCTTGGTTTCGTCGCTGTCAAGAGATTCAA 191 Query 261 GAATACGCCTTGGGATGATCCTGACTACTTCACGGAAGACGCAAAAACAGCTGGGGAGCT 320 ||||||||||||| ||||| ||| ||||||||||||||||||||||||||||| ||||| Sbjct 192 GAATACGCCTTGGCCTGATCATGAATACTTCACGGAAGACGCAAAAACAGCTGGAGAGCT 251 Query 321 AAAGCACAAGAGACTTGTCAAGTTGTTGGGATATTGCTGCGAGGAAGATGAAGGACTTCT 380 ||| ||||||||||| ||||||||| |||||||||| || || ||||||||||||||||| Sbjct 252 AAAACACAAGAGACTCGTCAAGTTGATGGGATATTGTTGTGATGAAGATGAAGGACTTCT 311 Query 381 TGTTGCAGAGTTTATGCCAAATGATACTCTTGCTAAGCGTTTATTCCAGGAGAAGAACAT 440 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 312 TGTTGCAGAGTTCATGCCTAATGATACTCTTGCTAAGCGTTTATTCCAGGAGAAGAACAT 371 Query 441 GGAATGGTCAATGAGGTTGCGAGTGGCGTATCATATAGTTGAAGCATTGGATTATTGCAA 500 ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 372 GGAATGGTCAATGAGGTTGCGAGTGGCTTATCATATAGCTGAAGCATTGGATTATTGCAA 431 Query 501 TTCTGTACGTTTTGACGAGTACGATAATCTAAGTGCTTACACTGTTCTGTTTGATAAGGA 560 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 432 TAGTGTACGTTTTGACGAGTACCATAATCTAAGTGCTTACACTGTTCTGTTTGATAAGGA 491 Query 561 TGGTGATGCCTGTCTTTCTAGTTTCGGCTTGGTGAAAGAGATCATCCGTTACAATCGAAG 620 ||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| Sbjct 492 TGGTGATGCCTGTCTTTCTAGTTTCGGATTTGTGAAAGAGATCATCCGTTATAATCGAAG 551 Query 621 AGAAGGAGGGAACGTGAGGACTGGGAATGTGACATACAGATTTGGTA-CTATCCTTGTGA 679 ||||||||| |||||||| |||||||||||||||||||||||||||| | |||||| ||| Sbjct 552 AGAAGGAGGAAACGTGAGCACTGGGAATGTGACATACAGATTTGGTAAC-ATCCTTTTGA 610 Query 680 ATCTGCTAACTGGA-TTGCAAATTTCTCCGAGCCATGCTCCTGAGATGATCAATGGAAAG 738 |||||||||||||| ||| ||||| |||| |||||||||| ||||||||||||||||||| Sbjct 611 ATCTGCTAACTGGAGTTG-AAATTCCTCCAAGCCATGCTCTTGAGATGATCAATGGAAAG 669 Query 739 GATGTCACTGAGCTCATGGATCCAAATCTGAAGGGAAAGTTCTCTACAGAAGAAGCTACT 798 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 670 GATGTTACTGAGCTGATGGATCCAAATCTGAAGGGAAAGTTCTCTACAGAAGAAGCTACT 729 Query 799 ATAGTTTTAAAACTCGCCTCTGAATGTTTGCAGTGGAAGGGTTATATAGAGAATGGCATC 858 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 730 GTAGTTTTAAAACTCGCCTCTGAATGTTTGCAGTGGAAGGATTATATAGAGAATCGCATC 789 Query 859 ACTAAAAAGCTTGTTGCAACACTTAAAGCCTTGCAGGCTAAAAAAGAA 906 |||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 790 ACTAAAGAGCTTGTTGCAACACTTGAAGCCTTGCAGGCTAAAAAAGAA 837 > Ahg343326 jgi|Araly1|343326|fgenesh1_pg.C_scaffold_3003089 Length=1407 Score = 375 bits (203), Expect = 2e-103 Identities = 535/688 (78%), Gaps = 52/688 (8%) Strand=Plus/Plus Query 245 CTGTCAAGAGATTCAAGAATACGCCTTGGGATGATCCT-GACTACTTCACGGAAGACGCA 303 ||||||||||||| || || | | ||||| ||||||| ||| ||| |||||| ||| Sbjct 227 CTGTCAAGAGATTTAATAACATGGCTTGGTCTGATCCTAAACT-CTTTGTGGAAGAGGCA 285 Query 304 AAAACAGCT-GGGGAGCTAAAG-CACAAGAGACTTGTCAAGTTG-TTGGGATATTGCTGC 360 ||| || | ||| || | ||| ||||||||||| || || ||| || ||||||||||| Sbjct 286 CAAAGAG-TAGGGAAG-TTAAGACACAAGAGACTCGTAAATTTGATT-GGATATTGCTGT 342 Query 361 GA-GGAAGAT-GAAGGACTTCTTGTTGCAGAGTTT-ATGCCAAATGATACTCTTGCTAAG 417 || || |||| |||| ||||||||||||| ||| |||||||||||||||||||||||| Sbjct 343 GATGG-AGATAAAAGG-TTTCTTGTTGCAGA-TTTGATGCCAAATGATACTCTTGCTAAG 399 Query 418 CGTTTATTCCAG-G-AGAAG--AA-C-ATGGAATGGTCAATGAGGTTGCGAGTGGCGTAT 471 |||||||||||| | | || || | ||||| ||||| || ||||| |||| || ||| Sbjct 400 CGTTTATTCCAGCGGAAAAATCAAACCATGGATTGGTCTATTAGGTTAAGAGTAGCCTAT 459 Query 472 CATATAGTTGAAGCAT-TGGATTATTGCAATTCTGT-ACGTTTTG-A-CGAGTAC-GATA 526 | ||| ||||| | ||||||||||||| || | | | |||| | || ||| | || Sbjct 460 TGTGTAGCGGAAGC-TCTGGATTATTGCAACACT-TCAGGCTTTGCATCG--TACAG-TA 514 Query 527 ATCTAAGTGCTTACACTGTTCTGTTTGATAAGGATGGTGATGCCTGTCTTTCTAGTTTCG 586 || |||||||||||| ||| |||||||| ||||||||||||| ||||||||| |||||| Sbjct 515 ATTTAAGTGCTTACAAGGTTTTGTTTGATGAGGATGGTGATGCATGTCTTTCTTGTTTCG 574 Query 587 GCTTGGTGAAAGAGATCATCCGTTACAATCGAAGAG-AAGGAGGGAACGTGAGGAC--TG 643 ||||| |||| ||||||| | | ||| || | || ||| || ||| | || || Sbjct 575 GCTTGATGAAGGAGATCAA---TAATGATCAAATAACAAC-AGG-AA-GTGTGAACCCTG 628 Query 644 GGAATGTGACATACAGATTTGGTACTATCCTTGTGAATCTGCTAACTGGATTGCAAATTT 703 ||||||| ||| |||||||||||| |||| |||||||| |||| |||| ||||||| Sbjct 629 AAAATGTGATATATAGATTTGGTACTCTCCTAGTGAATCTTCTAAGTGGAAAGCAAATTC 688 Query 704 CTCCGAGCCATGCTCCTGAGATGAT-CAATGGAAAGGATGTCACTGAGCTCATGGATCCA 762 |||| |||||||||||||||||||| || | ||||| |||| | || | ||||||||| Sbjct 689 CTCCAAGCCATGCTCCTGAGATGATACA-TCGAAAGAATGTTTTTAAGTTGATGGATCCA 747 Query 763 AATCTGAAGGGAAAGTTCTCTACAGAAGAAGCTACTATAGTTTTA-AAACTCGCCTCTGA 821 | |||||||| |||||||| | ||| |||||||| |||||| | |||||||||||| | Sbjct 748 TACCTGAAGGGGAAGTTCTCCATAGATGAAGCTACCGTAGTTT-ACAAACTCGCCTCTCA 806 Query 822 ATGTTTGCAGTG-GAAGGGTTATATAGAGAATGGCATCACTAAAA-AGCTTGTTGCAACA 879 ||||||||||| || || | | |||| | || ||| |||| || ||||||||||| Sbjct 807 ATGTTTGCAGTACGA-GGATCACG-AGAG--TCCCAACAC-AAAAGAGATTGTTGCAACA 861 Query 880 CTT-AAAGCCTTGCAGGCTAAAAAAGAA 906 ||| ||| ||||||| ||| || |||| Sbjct 862 CTTGAAA-CCTTGCAAACTAGAACAGAA 888 > Ahg339129 jgi|Araly1|339129|fgenesh1_pg.C_scaffold_2001228 Length=981 Score = 182 bits (98), Expect = 6e-45 Identities = 251/322 (78%), Gaps = 21/322 (7%) Strand=Plus/Plus Query 110 TCACAGAGTTCTTCCT-CTCCGATATCACCACGGCGACCAATAACTTCAGTTCCGACGAG 168 ||| |||| || |||| ||||||| ||| ||||||||||| |||||||||||||||||| Sbjct 89 TCAGAGAGGTC-TCCTACTCCGATCTCAAGACGGCGACCAAGAACTTCAGTTCCGACGAG 147 Query 169 ATCATATCAGAGAACGCAGAAGAATCTTCCAATGTTGTCTACAAAGGTTGTTTATTAGAG 228 || |||| ||||| ||||| ||||| |||||| | ||||| |||| | || | || Sbjct 148 ATTGTATCGGAGAAAGCAGAGGAATCATCCAATATCATCTAC-AAGG--GCGAATCACAG 204 Query 229 AATCT-TGGCTTCGTAGCTGTCAAGAGA-TTCAAGAATACGCCTTGGGATGATCCTGACT 286 | || |||| | | ||||||||| | |||||||| | | ||||| | ||| ||| | Sbjct 205 -AGCTCCGGCTCCATTGCTGTCAAG-TACTTCAAGAACATGGCTTGGCCTTATCGTGA-T 261 Query 287 -ACTTCACGGAAGACGCA-AAAACAGCTGGGG-AGCTAAAGCACAAGAGACTTGTCAAGT 343 | || ||||||| ||| ||| || ||||| || | | ||||||| || | || ||| Sbjct 262 CAGTTTGCGGAAGAGGCACGAAA-AG-TGGGGAAGATTAGGCACAAGGGAGTCGTGAAGA 319 Query 344 TG-TTGGGATATTGCTGCGA-GGAAGATG-AAGGACTTCTTGTTGCAGAGTTTATGCCAA 400 || || |||| |||||| || || ||||| |||| ||||||||||||||||| |||||| Sbjct 320 TGATT-GGATGTTGCTGTGATGG-AGATGAAAGG-TTTCTTGTTGCAGAGTTTTTGCCAA 376 Query 401 ATGATACTCTTGCTAAGCGTTT 422 |||||||||||||||||||||| Sbjct 377 ATGATACTCTTGCTAAGCGTTT 398 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36674246154 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5