BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17170.1
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480599 jgi|Araly1|480599|fgenesh2_kg.3__3300__AT2G17170.1 1238 0.0
Ahg343326 jgi|Araly1|343326|fgenesh1_pg.C_scaffold_3003089 375 2e-103
Ahg339129 jgi|Araly1|339129|fgenesh1_pg.C_scaffold_2001228 182 6e-45
> Ahg480599 jgi|Araly1|480599|fgenesh2_kg.3__3300__AT2G17170.1
Length=837
Score = 1238 bits (670), Expect = 0.0
Identities = 776/828 (94%), Gaps = 4/828 (0%)
Strand=Plus/Plus
Query 81 CAAGAACGACGGATTCGTCAACTGGCCTGTCACAGAGTTCTTCCTCTCCGATATCACCAC 140
|||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||| |
Sbjct 12 CAAGAACGACGGATTCGTCAACTGGCCTTTCATAGAGTTCTTCCTCTCCGATCTCACGAA 71
Query 141 GGCGACCAATAACTTCAGTTCCGACGAGATCATATCAGAGAACGCAGAAGAATCTTCCAA 200
||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 72 GGCGACCAAGAACTTCAGTACCGACGAGATCATATCAGAGAACGCAGAAGAATCCTCCAA 131
Query 201 TGTTGTCTACAAAGGTTGTTTATTAGAGAATCTTGGCTTCGTAGCTGTCAAGAGATTCAA 260
| |||||||||| ||| |||||| |||||||||||| ||||| |||||||||||||||||
Sbjct 132 TTTTGTCTACAAGGGTCGTTTATCAGAGAATCTTGGTTTCGTCGCTGTCAAGAGATTCAA 191
Query 261 GAATACGCCTTGGGATGATCCTGACTACTTCACGGAAGACGCAAAAACAGCTGGGGAGCT 320
||||||||||||| ||||| ||| ||||||||||||||||||||||||||||| |||||
Sbjct 192 GAATACGCCTTGGCCTGATCATGAATACTTCACGGAAGACGCAAAAACAGCTGGAGAGCT 251
Query 321 AAAGCACAAGAGACTTGTCAAGTTGTTGGGATATTGCTGCGAGGAAGATGAAGGACTTCT 380
||| ||||||||||| ||||||||| |||||||||| || || |||||||||||||||||
Sbjct 252 AAAACACAAGAGACTCGTCAAGTTGATGGGATATTGTTGTGATGAAGATGAAGGACTTCT 311
Query 381 TGTTGCAGAGTTTATGCCAAATGATACTCTTGCTAAGCGTTTATTCCAGGAGAAGAACAT 440
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 312 TGTTGCAGAGTTCATGCCTAATGATACTCTTGCTAAGCGTTTATTCCAGGAGAAGAACAT 371
Query 441 GGAATGGTCAATGAGGTTGCGAGTGGCGTATCATATAGTTGAAGCATTGGATTATTGCAA 500
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 372 GGAATGGTCAATGAGGTTGCGAGTGGCTTATCATATAGCTGAAGCATTGGATTATTGCAA 431
Query 501 TTCTGTACGTTTTGACGAGTACGATAATCTAAGTGCTTACACTGTTCTGTTTGATAAGGA 560
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 432 TAGTGTACGTTTTGACGAGTACCATAATCTAAGTGCTTACACTGTTCTGTTTGATAAGGA 491
Query 561 TGGTGATGCCTGTCTTTCTAGTTTCGGCTTGGTGAAAGAGATCATCCGTTACAATCGAAG 620
||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 492 TGGTGATGCCTGTCTTTCTAGTTTCGGATTTGTGAAAGAGATCATCCGTTATAATCGAAG 551
Query 621 AGAAGGAGGGAACGTGAGGACTGGGAATGTGACATACAGATTTGGTA-CTATCCTTGTGA 679
||||||||| |||||||| |||||||||||||||||||||||||||| | |||||| |||
Sbjct 552 AGAAGGAGGAAACGTGAGCACTGGGAATGTGACATACAGATTTGGTAAC-ATCCTTTTGA 610
Query 680 ATCTGCTAACTGGA-TTGCAAATTTCTCCGAGCCATGCTCCTGAGATGATCAATGGAAAG 738
|||||||||||||| ||| ||||| |||| |||||||||| |||||||||||||||||||
Sbjct 611 ATCTGCTAACTGGAGTTG-AAATTCCTCCAAGCCATGCTCTTGAGATGATCAATGGAAAG 669
Query 739 GATGTCACTGAGCTCATGGATCCAAATCTGAAGGGAAAGTTCTCTACAGAAGAAGCTACT 798
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 GATGTTACTGAGCTGATGGATCCAAATCTGAAGGGAAAGTTCTCTACAGAAGAAGCTACT 729
Query 799 ATAGTTTTAAAACTCGCCTCTGAATGTTTGCAGTGGAAGGGTTATATAGAGAATGGCATC 858
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 730 GTAGTTTTAAAACTCGCCTCTGAATGTTTGCAGTGGAAGGATTATATAGAGAATCGCATC 789
Query 859 ACTAAAAAGCTTGTTGCAACACTTAAAGCCTTGCAGGCTAAAAAAGAA 906
|||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 790 ACTAAAGAGCTTGTTGCAACACTTGAAGCCTTGCAGGCTAAAAAAGAA 837
> Ahg343326 jgi|Araly1|343326|fgenesh1_pg.C_scaffold_3003089
Length=1407
Score = 375 bits (203), Expect = 2e-103
Identities = 535/688 (78%), Gaps = 52/688 (8%)
Strand=Plus/Plus
Query 245 CTGTCAAGAGATTCAAGAATACGCCTTGGGATGATCCT-GACTACTTCACGGAAGACGCA 303
||||||||||||| || || | | ||||| ||||||| ||| ||| |||||| |||
Sbjct 227 CTGTCAAGAGATTTAATAACATGGCTTGGTCTGATCCTAAACT-CTTTGTGGAAGAGGCA 285
Query 304 AAAACAGCT-GGGGAGCTAAAG-CACAAGAGACTTGTCAAGTTG-TTGGGATATTGCTGC 360
||| || | ||| || | ||| ||||||||||| || || ||| || |||||||||||
Sbjct 286 CAAAGAG-TAGGGAAG-TTAAGACACAAGAGACTCGTAAATTTGATT-GGATATTGCTGT 342
Query 361 GA-GGAAGAT-GAAGGACTTCTTGTTGCAGAGTTT-ATGCCAAATGATACTCTTGCTAAG 417
|| || |||| |||| ||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 343 GATGG-AGATAAAAGG-TTTCTTGTTGCAGA-TTTGATGCCAAATGATACTCTTGCTAAG 399
Query 418 CGTTTATTCCAG-G-AGAAG--AA-C-ATGGAATGGTCAATGAGGTTGCGAGTGGCGTAT 471
|||||||||||| | | || || | ||||| ||||| || ||||| |||| || |||
Sbjct 400 CGTTTATTCCAGCGGAAAAATCAAACCATGGATTGGTCTATTAGGTTAAGAGTAGCCTAT 459
Query 472 CATATAGTTGAAGCAT-TGGATTATTGCAATTCTGT-ACGTTTTG-A-CGAGTAC-GATA 526
| ||| ||||| | ||||||||||||| || | | | |||| | || ||| | ||
Sbjct 460 TGTGTAGCGGAAGC-TCTGGATTATTGCAACACT-TCAGGCTTTGCATCG--TACAG-TA 514
Query 527 ATCTAAGTGCTTACACTGTTCTGTTTGATAAGGATGGTGATGCCTGTCTTTCTAGTTTCG 586
|| |||||||||||| ||| |||||||| ||||||||||||| ||||||||| ||||||
Sbjct 515 ATTTAAGTGCTTACAAGGTTTTGTTTGATGAGGATGGTGATGCATGTCTTTCTTGTTTCG 574
Query 587 GCTTGGTGAAAGAGATCATCCGTTACAATCGAAGAG-AAGGAGGGAACGTGAGGAC--TG 643
||||| |||| ||||||| | | ||| || | || ||| || ||| | || ||
Sbjct 575 GCTTGATGAAGGAGATCAA---TAATGATCAAATAACAAC-AGG-AA-GTGTGAACCCTG 628
Query 644 GGAATGTGACATACAGATTTGGTACTATCCTTGTGAATCTGCTAACTGGATTGCAAATTT 703
||||||| ||| |||||||||||| |||| |||||||| |||| |||| |||||||
Sbjct 629 AAAATGTGATATATAGATTTGGTACTCTCCTAGTGAATCTTCTAAGTGGAAAGCAAATTC 688
Query 704 CTCCGAGCCATGCTCCTGAGATGAT-CAATGGAAAGGATGTCACTGAGCTCATGGATCCA 762
|||| |||||||||||||||||||| || | ||||| |||| | || | |||||||||
Sbjct 689 CTCCAAGCCATGCTCCTGAGATGATACA-TCGAAAGAATGTTTTTAAGTTGATGGATCCA 747
Query 763 AATCTGAAGGGAAAGTTCTCTACAGAAGAAGCTACTATAGTTTTA-AAACTCGCCTCTGA 821
| |||||||| |||||||| | ||| |||||||| |||||| | |||||||||||| |
Sbjct 748 TACCTGAAGGGGAAGTTCTCCATAGATGAAGCTACCGTAGTTT-ACAAACTCGCCTCTCA 806
Query 822 ATGTTTGCAGTG-GAAGGGTTATATAGAGAATGGCATCACTAAAA-AGCTTGTTGCAACA 879
||||||||||| || || | | |||| | || ||| |||| || |||||||||||
Sbjct 807 ATGTTTGCAGTACGA-GGATCACG-AGAG--TCCCAACAC-AAAAGAGATTGTTGCAACA 861
Query 880 CTT-AAAGCCTTGCAGGCTAAAAAAGAA 906
||| ||| ||||||| ||| || ||||
Sbjct 862 CTTGAAA-CCTTGCAAACTAGAACAGAA 888
> Ahg339129 jgi|Araly1|339129|fgenesh1_pg.C_scaffold_2001228
Length=981
Score = 182 bits (98), Expect = 6e-45
Identities = 251/322 (78%), Gaps = 21/322 (7%)
Strand=Plus/Plus
Query 110 TCACAGAGTTCTTCCT-CTCCGATATCACCACGGCGACCAATAACTTCAGTTCCGACGAG 168
||| |||| || |||| ||||||| ||| ||||||||||| ||||||||||||||||||
Sbjct 89 TCAGAGAGGTC-TCCTACTCCGATCTCAAGACGGCGACCAAGAACTTCAGTTCCGACGAG 147
Query 169 ATCATATCAGAGAACGCAGAAGAATCTTCCAATGTTGTCTACAAAGGTTGTTTATTAGAG 228
|| |||| ||||| ||||| ||||| |||||| | ||||| |||| | || | ||
Sbjct 148 ATTGTATCGGAGAAAGCAGAGGAATCATCCAATATCATCTAC-AAGG--GCGAATCACAG 204
Query 229 AATCT-TGGCTTCGTAGCTGTCAAGAGA-TTCAAGAATACGCCTTGGGATGATCCTGACT 286
| || |||| | | ||||||||| | |||||||| | | ||||| | ||| ||| |
Sbjct 205 -AGCTCCGGCTCCATTGCTGTCAAG-TACTTCAAGAACATGGCTTGGCCTTATCGTGA-T 261
Query 287 -ACTTCACGGAAGACGCA-AAAACAGCTGGGG-AGCTAAAGCACAAGAGACTTGTCAAGT 343
| || ||||||| ||| ||| || ||||| || | | ||||||| || | || |||
Sbjct 262 CAGTTTGCGGAAGAGGCACGAAA-AG-TGGGGAAGATTAGGCACAAGGGAGTCGTGAAGA 319
Query 344 TG-TTGGGATATTGCTGCGA-GGAAGATG-AAGGACTTCTTGTTGCAGAGTTTATGCCAA 400
|| || |||| |||||| || || ||||| |||| ||||||||||||||||| ||||||
Sbjct 320 TGATT-GGATGTTGCTGTGATGG-AGATGAAAGG-TTTCTTGTTGCAGAGTTTTTGCCAA 376
Query 401 ATGATACTCTTGCTAAGCGTTT 422
||||||||||||||||||||||
Sbjct 377 ATGATACTCTTGCTAAGCGTTT 398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36674246154
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5