BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17180.1
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931568 jgi|Araly1|931568|scaffold_304025.1 1110 0.0
> Ahg931568 jgi|Araly1|931568|scaffold_304025.1
Length=868
Score = 1110 bits (601), Expect = 0.0
Identities = 761/834 (91%), Gaps = 27/834 (3%)
Strand=Plus/Plus
Query 1 ATGTCGAACACTTCAAACTCCGATCCCAATTCCGATATCCCATTTGCTTCCTCCAATGTA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGTCGAACACTTCAAACTCCGATCCCAATTCCGATATCCCATTTGCTTCCTCCAATGTA 80
Query 61 ACTCTTCCTAGTTACAATCAAAACCCAAGAAGAAAACGTACTAAACTCACCAACAACGAA 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 ACTCTTCCGAGTTACAATCAAAACCCAAGAAGAAAACGTACTAAACTCACCAACAACGAA 140
Query 121 GTCGGTTCTTCTTCGTCTTCTCCAAGGCCTAAACCGGTCACGCAACCGGACCCTGATGCT 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 141 ACCGGTTCTTCTTCGTCTTCTCCAAGGCCTAAACCGGTCACGCAACCGGATCCTGATGCT 200
Query 181 TCACAAATCGCACGACCATGTACTGAATGTGGTAAACAATTCGGGTCACTGAAGGCACTC 240
||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 201 TCACAAATCGCAC--C-ATGTACTGAATGTGGTAAACAATTCGGGTCATTGAAGGCACTC 257
Query 241 TTTGGACACATGAGATGTCACCCTGAACGTCAGTGGCGTGGCATCAACCCTCCT-TCTAA 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 258 TTTGGACACATGAGATGTCACCCTGAACGTCAGTGGCGTGGCATCAACCCTCCTGT-TAA 316
Query 300 CT-TCAAACGTAGGATCAACTCAAACGCTGCGTCATCATCCTCGAGTTGGGATCCATCTG 358
| |||| ||| |||||||| ||| ||||||||||||||||||||||||||||| ||| |
Sbjct 317 GTATCAA-CGTGGGATCAACGCAACCGCTGCGTCATCATCCTCGAGTTGGGATCTATCGG 375
Query 359 AGGAAGAGCATAACATAGCCTCCTGT-TTACTAATGATGGCTAATGGTGATGTCCCAACC 417
|||||||||||||||||||||| | | ||||||||| |||||| ||||| |||| | |||
Sbjct 376 AGGAAGAGCATAACATAGCCTCTT-TATTACTAATGTTGGCTAGTGGTGGTGTCTCGACC 434
Query 418 CGTTCAAGTGAAGTTGAGGAACGGTTTGAGTGTGATGGTTGTAAGAAAGTGTTTGGGTCA 477
||||||||| |||||||| ||||||| |||||| |||||||||||||||||||||||||
Sbjct 435 GGTTCAAGTGGAGTTGAGGGACGGTTTAAGTGTGGTGGTTGTAAGAAAGTGTTTGGGTCA 494
Query 478 CATCAAGCGTTAGGCGGACATAGAGCAACACATAAAGACGTCAAAGGATGTTTCGCCAAT 537
||||||||||||| |||||||||| |||||||||| | ||||||||||||||| ||| |
Sbjct 495 CATCAAGCGTTAGATGGACATAGAGAAACACATAAACATGTCAAAGGATGTTTCCCCATT 554
Query 538 AAAAACATAACCGAAGATCCTCCTCCTCCACCTCCTC------------------AAGAG 579
| |||||||| |||||||||||||||||| ||||||| |||||
Sbjct 555 ACAAACATAAACGAAGATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCAAGAG 614
Query 580 ATCGTTGATCAAGATAAGGGCAAGAGTGTGAAGTTGGTCTCGGGGATGAATCATCGATGT 639
||||||||| |||||||||||||| |||||||||||||||| || |||||||||||||||
Sbjct 615 ATCGTTGATAAAGATAAGGGCAAGGGTGTGAAGTTGGTCTCAGGCATGAATCATCGATGT 674
Query 640 AACATCTGTTCTAGAGTGTTCTCCAGTGGTCAAGCGTTAGGAGGTCACATGAGATGTCAT 699
||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 675 AACATATGTTTTAGAGTGTTCTCCAGTGGTCAAGCGTTAGGTGGTCACATGAGATGTCAT 734
Query 700 TGGGAGAAAGATCAGGAAGAGAACCAAGTCAGGGGCATTGATCTTAATGTTCCTGCGGCG 759
||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||| ||
Sbjct 735 TGGGAGAAAGATCAGGAAGAGAAGCAAGTCAAGGGCATCGATCTTAATGTTCCTGCGACG 794
Query 760 ACATCTTCAGACACAACGTTAGGTTGTTCCTTGGATCTTAGGTTAGGACTTTGA 813
|||||||||||||||||||||| |||||| || |||||||||||||||||||||
Sbjct 795 ACATCTTCAGACACAACGTTAGATTGTTCTTTAGATCTTAGGTTAGGACTTTGA 848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30040858596
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5