BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G17180.1 Length=813 Score E Sequences producing significant alignments: (Bits) Value Ahg931568 jgi|Araly1|931568|scaffold_304025.1 1110 0.0 > Ahg931568 jgi|Araly1|931568|scaffold_304025.1 Length=868 Score = 1110 bits (601), Expect = 0.0 Identities = 761/834 (91%), Gaps = 27/834 (3%) Strand=Plus/Plus Query 1 ATGTCGAACACTTCAAACTCCGATCCCAATTCCGATATCCCATTTGCTTCCTCCAATGTA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 21 ATGTCGAACACTTCAAACTCCGATCCCAATTCCGATATCCCATTTGCTTCCTCCAATGTA 80 Query 61 ACTCTTCCTAGTTACAATCAAAACCCAAGAAGAAAACGTACTAAACTCACCAACAACGAA 120 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 81 ACTCTTCCGAGTTACAATCAAAACCCAAGAAGAAAACGTACTAAACTCACCAACAACGAA 140 Query 121 GTCGGTTCTTCTTCGTCTTCTCCAAGGCCTAAACCGGTCACGCAACCGGACCCTGATGCT 180 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 141 ACCGGTTCTTCTTCGTCTTCTCCAAGGCCTAAACCGGTCACGCAACCGGATCCTGATGCT 200 Query 181 TCACAAATCGCACGACCATGTACTGAATGTGGTAAACAATTCGGGTCACTGAAGGCACTC 240 ||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 201 TCACAAATCGCAC--C-ATGTACTGAATGTGGTAAACAATTCGGGTCATTGAAGGCACTC 257 Query 241 TTTGGACACATGAGATGTCACCCTGAACGTCAGTGGCGTGGCATCAACCCTCCT-TCTAA 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 258 TTTGGACACATGAGATGTCACCCTGAACGTCAGTGGCGTGGCATCAACCCTCCTGT-TAA 316 Query 300 CT-TCAAACGTAGGATCAACTCAAACGCTGCGTCATCATCCTCGAGTTGGGATCCATCTG 358 | |||| ||| |||||||| ||| ||||||||||||||||||||||||||||| ||| | Sbjct 317 GTATCAA-CGTGGGATCAACGCAACCGCTGCGTCATCATCCTCGAGTTGGGATCTATCGG 375 Query 359 AGGAAGAGCATAACATAGCCTCCTGT-TTACTAATGATGGCTAATGGTGATGTCCCAACC 417 |||||||||||||||||||||| | | ||||||||| |||||| ||||| |||| | ||| Sbjct 376 AGGAAGAGCATAACATAGCCTCTT-TATTACTAATGTTGGCTAGTGGTGGTGTCTCGACC 434 Query 418 CGTTCAAGTGAAGTTGAGGAACGGTTTGAGTGTGATGGTTGTAAGAAAGTGTTTGGGTCA 477 ||||||||| |||||||| ||||||| |||||| ||||||||||||||||||||||||| Sbjct 435 GGTTCAAGTGGAGTTGAGGGACGGTTTAAGTGTGGTGGTTGTAAGAAAGTGTTTGGGTCA 494 Query 478 CATCAAGCGTTAGGCGGACATAGAGCAACACATAAAGACGTCAAAGGATGTTTCGCCAAT 537 ||||||||||||| |||||||||| |||||||||| | ||||||||||||||| ||| | Sbjct 495 CATCAAGCGTTAGATGGACATAGAGAAACACATAAACATGTCAAAGGATGTTTCCCCATT 554 Query 538 AAAAACATAACCGAAGATCCTCCTCCTCCACCTCCTC------------------AAGAG 579 | |||||||| |||||||||||||||||| ||||||| ||||| Sbjct 555 ACAAACATAAACGAAGATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCAAGAG 614 Query 580 ATCGTTGATCAAGATAAGGGCAAGAGTGTGAAGTTGGTCTCGGGGATGAATCATCGATGT 639 ||||||||| |||||||||||||| |||||||||||||||| || ||||||||||||||| Sbjct 615 ATCGTTGATAAAGATAAGGGCAAGGGTGTGAAGTTGGTCTCAGGCATGAATCATCGATGT 674 Query 640 AACATCTGTTCTAGAGTGTTCTCCAGTGGTCAAGCGTTAGGAGGTCACATGAGATGTCAT 699 ||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 675 AACATATGTTTTAGAGTGTTCTCCAGTGGTCAAGCGTTAGGTGGTCACATGAGATGTCAT 734 Query 700 TGGGAGAAAGATCAGGAAGAGAACCAAGTCAGGGGCATTGATCTTAATGTTCCTGCGGCG 759 ||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||| || Sbjct 735 TGGGAGAAAGATCAGGAAGAGAAGCAAGTCAAGGGCATCGATCTTAATGTTCCTGCGACG 794 Query 760 ACATCTTCAGACACAACGTTAGGTTGTTCCTTGGATCTTAGGTTAGGACTTTGA 813 |||||||||||||||||||||| |||||| || ||||||||||||||||||||| Sbjct 795 ACATCTTCAGACACAACGTTAGATTGTTCTTTAGATCTTAGGTTAGGACTTTGA 848 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30040858596 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5