BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17210.1
Length=2148
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319672 jgi|Araly1|319672|fgenesh1_pm.C_scaffold_3002688 2976 0.0
> Ahg319672 jgi|Araly1|319672|fgenesh1_pm.C_scaffold_3002688
Length=2172
Score = 2976 bits (1611), Expect = 0.0
Identities = 2000/2183 (92%), Gaps = 46/2183 (2%)
Strand=Plus/Plus
Query 1 ATGGGATCACACTTGTGTTCAAAGCTACAAGCTTTGTCTTCGAAGATTAAGCAAGCTTCT 60
|||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGGATCACACCTGTATTCAAAGCTACAAGCTTTGTCTTCAAAGATTAAGCAAGCTTCT 60
Query 61 GTTAGTGGAAAATGGCGGGAAGTGGTCTCTGGGTATTCAGAGATACAGAGAGCTGGAGTT 120
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 61 GTTAATGGAAAATGGCGGGAAGTGGTCTCTGGGTATTCAGAGATACAGAGTGCTGGAATT 120
Query 121 CAATTTAACGATCCTTTCGTTTTCCCCATTGTTTTTAAAGCTTGTGCTAAG----C-T-- 173
||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
Sbjct 121 CAATTTAACGATCCTTTTGTTTTCCCCATTGTTTTTAAAGCTTGTGCTAAGCTCTCATGG 180
Query 174 C---T-C-A-----TG-G-C---TGTTTC--AAGGGAACTCAATTGCTGATTTCTATATG 216
| | | | || | | |||||| ||||| || ||||||||||||||||||
Sbjct 181 CTGTTGCAAGGTTTTGAGTCTTATGTTTCTGTGGGGAATTCGATTGCTGATTTCTATATG 240
Query 217 AAATGTGGAGACTTGTGTTCTGGGTTACGAGAATTTGATTGTATGAATTCGAGAGATTCG 276
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 241 AAATGTGGAGACTTGTGTTCTGGGTTACGAGCATTTGATTGTATGAATTCGAGAGATTCG 300
Query 277 GTGTCTTGGAATGTTATCGTTTTTGGGCTTCTCGATTATGGTTTTGAAGAAGAAGGGTTA 336
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 GTGTCTTGGAATGTTATCGTTTTTGGGCTTCTCGATCATGGTTTTGAAGAAGAAGGGTTA 360
Query 337 TGGTGGTTTTCGAAGTTGAGAGTTTGGGGTTTTGAGCCTAATACTTCAACATTGGTTCTT 396
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 361 TGGTGGTTTTCGAAGTTAAGAGTTTGGGGTTTTGAGCCTAATGTTTCAACATTGGTTCTT 420
Query 397 GTGATTCATGCGTGTCGTAGTTTATGGTTCGATGGAGAGAAGATTCATGGCTATGTGATC 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 421 GTGATTCATGCGTGTCGTAGTTTATGGTTCGATGGAGAGAAGATTCATGGCTATGTGTTC 480
Query 457 CGTAGTGGGTTTTGTG-GGATTTCGTCTGTTCAAAATTCGATCTTGTGTATGTACGCAGA 515
|||||||||||||| | |||||||||||||||||||||||||||||||| |||| ||||
Sbjct 481 CGTAGTGGGTTTTG-GAGGATTTCGTCTGTTCAAAATTCGATCTTGTGTCTGTATTCAGA 539
Query 516 -TAGTGATTCTTTAAGTGCACGTAAACTGTTCGATGAAATGTCTGAAAGAGATGTTATTT 574
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 540 GTT-TGATTCTTTAAGTGCACGTAAACTGTTTGATGAAATGTCTGAAAGAGATGTTATTT 598
Query 575 CTTGGAGTGTTGTAATCCGAAGTTATGTGCAGAGCAAGGAACCTGTTGTTGG-ATTGAAG 633
| ||||||||||| ||| ||||||||||||||||| ||||||||||| |||| |||| ||
Sbjct 599 CATGGAGTGTTGTTATCAGAAGTTATGTGCAGAGCCAGGAACCTGTT-TTGGGATTGGAG 657
Query 634 TTGTTTAAAGAGATGGTTCATGAGGCGAAAACAGAGCCTGATTGTGTGACTGTGACAAGT 693
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 658 TTGTTTAAAGAGATGGTTCGTGAGGCGAAAACAGAGCCTGATTGTGTAACTGTGACAAGT 717
Query 694 GTTCTCAAGGCTTGCACGGTGATGGAGGACATTGATGTTGGAAGATCAGTTCATGGGTTT 753
||| | |||||||| |||| |||| ||||||||||| |||||||||||||||||||||
Sbjct 718 GTTTTAAAGGCTTGTGCGGTTTTGGATGACATTGATGTGGGAAGATCAGTTCATGGGTTT 777
Query 754 TCGATACGGAGAGGTTTTGATTTGGCAGATGTGTTTGTTTGCAATTCACTTATTGATATG 813
||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||
Sbjct 778 TCGATACGGAGAGGTTTTGATTTGGTAGATGTGTTTGTGCGCAATTCACTCATTGATATG 837
Query 814 TATTCAAAAGGATTTGATGTTGATTCAGCATTTAGAGTATTTGATGAGACCACTTGTCGA 873
||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 838 TATTCAAAAGGATATGATGCTGATTCAGCATTTAGAGTATTTGATGAGACGACTTGTCGA 897
Query 874 AACATTGTTTCATGGAATTCGATTTTGGCTGGGTTTGTACATAATCAAAGGTACGATGAG 933
|||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||
Sbjct 898 AACATTGTTTCATGGAATTCGATTTTGGCTGGATTTGTATATAACCAAAGGTACGATGAG 957
Query 934 GCTCTTGAGATGTTTCATTTGATGGTGCAA-GAGGCGGTCGAAGTGGATGAAGTTACAGT 992
|||||||||||||||| ||||||| | || ||||| || |||| ||||||||||||| |
Sbjct 958 GCTCTTGAGATGTTTCGTTTGATGA-GAAAAGAGGCTGTTGAAGCGGATGAAGTTACACT 1016
Query 993 CGTGAGTCTTCTCCGGGTTTGCAAGTTTTTTGAGCAGCCATTGCCTTGCAAGTCAATACA 1052
|||||||||||| | ||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1017 CGTGAGTCTTCTTCAGGTTTGCAAGTTTTTTGAGCATCCATTGCCCTGCAAGTCAATACA 1076
Query 1053 TGGTGTAATAATTCGGCGTGGATATGAGTCAAACGAAGTGGCTTTGAGTTCTTTGATTGA 1112
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1077 TGGTGTAATAATCCGGCGTGGATATGAGTCAAACGAAGTGGCGTTGAGTTCTTTGATGGA 1136
Query 1113 TGCGTATACAAGCTGCAGTCTTGTTGATGATGCAGGAACCGTGCTTGATTCGATGACGTA 1172
||| |||||||| ||||||||||||||||| ||| |||||||| ||||||||||| | ||
Sbjct 1137 TGCATATACAAGTTGCAGTCTTGTTGATGACGCAAGAACCGTGTTTGATTCGATGTCATA 1196
Query 1173 CAAGGATGTGGTGTCATGTAGCACAATGATCTCTGGATTAGCCCATGCTGGCCGATCCGA 1232
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||
Sbjct 1197 CAAGGATGTGGTGTCATGTAGCACAATGATCTCTGGATTAGCCCGTTCTGGCCGATCTGA 1256
Query 1233 TGAAGCAATCTCAATCTTCTGTCACATGAGGGATACGCCCAATGCTATCACCGTCATAAG 1292
|||||||||||||||||||||||| |||||||||| |||||| || ||||||||||||||
Sbjct 1257 TGAAGCAATCTCAATCTTCTGTCAGATGAGGGATAAGCCCAACGCAATCACCGTCATAAG 1316
Query 1293 TCTTCTTAACGCATGCTCAGTTTCAGCGGACTTGAGAACTTCCAAATGGGCACATGGGAT 1352
||| |||| |||||||||||||||||| | ||||||||||||||||||||||||||| ||
Sbjct 1317 TCTACTTAGCGCATGCTCAGTTTCAGCAGTCTTGAGAACTTCCAAATGGGCACATGGAAT 1376
Query 1353 TGCTATCCGGAGAAGCTTAGCCATCAATGACATCTCAGTTGGTACCTCTATTGTTGACGC 1412
||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1377 TGCTATCCGGAGAGGCTTAGCCATCAATGATATCTCAGTTGATACCTCTATTGTTGACGC 1436
Query 1413 ATACGCAAAATGTGGTGCCATAGAAATGGCGAGAAGGACTTTCGATCAAATCACTGAGAA 1472
| |||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 1437 AAACGCCAAATGTGGTGCCATAGATATTGCGAGAAGGACATTCGATCAAATCACTGAGAA 1496
Query 1473 AAACATCATCTCTTGGACCGTGATCATTTCAGCATATGCTATTAATGGTCTACCGGATAA 1532
|| |||| |||||||||||||||||||||||||||| || ||||| ||| ||||||||||
Sbjct 1497 AAGCATCGTCTCTTGGACCGTGATCATTTCAGCATACGCGATTAACGGTTTACCGGATAA 1556
Query 1533 AGCATTAGCATTGTTCGATGAAATGAAACAAAA-AGGTTACACACCAAACGCTGTGACAT 1591
||||||||||| ||||||||||||||||| | | || |||||||||||||||||||||||
Sbjct 1557 AGCATTAGCATCGTTCGATGAAATGAAACGAGATAG-TTACACACCAAACGCTGTGACAT 1615
Query 1592 ATCTGGCAGCTTTATCAGCTTGTAATCATGGAGGATTGGTAAAGAAAGGTCTCATGATCT 1651
| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1616 ACCTTGCAGCTTTATCAGCTTGCAATCATGGAGGATTGGTAAAGAAAGGTCTCATGATCT 1675
Query 1652 TCAAATCAATGGTAGAAGAAGATCACAAACCTTCATTGCAACATTACTCTTGCATTGTAG 1711
||| ||||||||||||||||||||| |||||||| || || |||||||||||||||||||
Sbjct 1676 TCAGATCAATGGTAGAAGAAGATCAAAAACCTTCGTTACAGCATTACTCTTGCATTGTAG 1735
Query 1712 ACATGCTTAGCCGAGCTGGAGAGATTGATACGGCTGTGGAACTTATCAAGAATCTTCCAG 1771
|||||||||||||||| |||||||||||||| || ||||||| |||||||| |||||||
Sbjct 1736 ACATGCTTAGCCGAGCAGGAGAGATTGATACCGCAATGGAACTAATCAAGAACCTTCCAG 1795
Query 1772 AAGATGTTAAAGCAGGGGCTAGTGCTTGGGGAGCGATTCTTAGCGGTTGCAGAAACCGTT 1831
|||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1796 AAGACGTTAAAGCCGGGGCTAGTGCTTGGGGAGCGATTCTTAGCGGTTGTAGAAACCGTT 1855
Query 1832 TTAAAAAATTG-ATCATTACCTCAGAGGTAGTAGCTGAGGTTCTTGAACTCGAGCCCTTG 1890
| ||||| | | |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1856 T-AAAAAGTGGGATCATTACCTCAGAGGTAGTAGCTGAGGTTCTTGAACTCGAGCCATTG 1914
Query 1891 TGTTCTTCAGGTTACTTGCTTGCGTCAAGCA-CATTTGCTGCAGAAAAATCATGGGAAGA 1949
||||||||||| || ||||||||||||||| | || |||||||| |||||||||| ||
Sbjct 1915 TGTTCTTCAGGGTATTTGCTTGCGTCAAGCGTC-TTCGCTGCAGAGAAATCATGGGTCGA 1973
Query 1950 TGTAGCAATGATGAGGAGGTTGGTGAAGGAGAGAAAGGTTCGGGTCGTTGCGGGTTATAG 2009
|||||| |||||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1974 TGTAGCGATGATGAGAAGTTTGGTGAAGGAGAGAAAGGTTCGAGTCGTTGCGGGTTATAG 2033
Query 2010 CATGGTTCGTGAAGGAAAC-TTGGC-A-AAGAGGTTTTTGGCTGGAGACAAGTTAAGCCA 2066
|||||||| |||||||| | ||| | | || || |||||||||||||||||||||| |||
Sbjct 2034 CATGGTTCTTGAAGGAAGCATTG-CTAGAA-AG-TTTTTGGCTGGAGACAAGTTAAACCA 2090
Query 2067 GAGTGATTCTGAATTAAATGATGTCGTTCAGAGTCTTCATAGATGCATGAAGTTAGACGA 2126
||||||||||| ||||| |||||||||||||||||||| |||||||||| |||||||||
Sbjct 2091 CAGTGATTCTGAGTTAAACGATGTCGTTCAGAGTCTTCACAGATGCATGAGGTTAGACGA 2150
Query 2127 TACTGC-AGGACCGATAAACTAA 2148
|| || ||||||||||||||||
Sbjct 2151 TA-TGGTAGGACCGATAAACTAA 2172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80827499890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5