BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17220.1
Length=1856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480605 jgi|Araly1|480605|fgenesh2_kg.3__3306__AT2G17220.1 2518 0.0
> Ahg480605 jgi|Araly1|480605|fgenesh2_kg.3__3306__AT2G17220.1
Length=1686
Score = 2518 bits (1363), Expect = 0.0
Identities = 1601/1712 (94%), Gaps = 32/1712 (2%)
Strand=Plus/Plus
Query 15 tctctctcttctctcAATGCCCATG-ATAACACCAAACCACTTGCTTCTGCTTCTCACAC 73
||||||||||||||||||||||||| || | | | |||||||||||| ||||||||||||
Sbjct 1 TCTCTCTCTTCTCTCAATGCCCATGAATGATATCTAACCACTTGCTTATGCTTCTCACAC 60
Query 74 CACAAAATTCTCTATTCAATAAATAAATCTCTCAGAAGAAATTTCTTCGAATTGGAGAAG 133
||| |||||||||||||||||||||||||| |||||||||||||| |||| |||||| |
Sbjct 61 CAC-AAATTCTCTATTCAATAAATAAATCTGTCAGAAGAAATTTCGTCGACTTGGAGCCG 119
Query 134 ATaaaaaaaGTTTTATCTTTTCTTGAttttttttcttttttttCTAATCATTCACACCCA 193
|||||||||||||||||||||| ||||| ||| |||||||||||||||||| |||
Sbjct 120 ATAAAAAAAGTTTTATCTTTTC----TTTTTATTC---TTTTTCTAATCATTCACAGCCA 172
Query 194 ATTTAAACGAGACTTGTCCAATCTCTATCCATCAATATTGTATCATTTCTTGTAAAGTAC 253
|||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 173 ATTTAAACGATACTTGTCCGATCTCTATCCATCAATATTGTATCTTTTCTTGTAAAGTAC 232
Query 254 TCTGTTTTAGCTTCACACGCCAttttttgtttttC-CATTTGACTTCTGTAAAATCCTGA 312
||||||||||||| |||||||||||||| ||| || | |||||||| |||||||||||||
Sbjct 233 TCTGTTTTAGCTTAACACGCCATTTTTT-TTTCTCTC-TTTGACTTGTGTAAAATCCTGA 290
Query 313 CAAA-GAATTGTTTAAGACATAC--ATATACGTGTTATATATTTGTAAAGGAAGCAAAAA 369
|||| | ||||||||||||| || | ||||||||||||||||||||||||| |||||||
Sbjct 291 CAAAGGTATTGTTTAAGACAGACAGAGATACGTGTTATATATTTGTAAAGGAGGCAAAAA 350
Query 370 GTGTTTGGCTTTTAATTTCTCTCTGTTGGGATGGGTCTTTGTTGGGGATCTCCATCTGAT 429
| || ||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||
Sbjct 351 GGGTCTGGCTTTTAATTTTTCTTTGTTGGGATGGGACTTTGTTGGGGATCTCCATCTGAT 410
Query 430 TCTCCTCCAACAACAACACCTTCCTCTACTGGTAACATCAGTTCAGTAGGGACTTTTAAG 489
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 411 TCTCCTCCAACAGCAACACCTACCTCTACTGGTAACATCAGTTCAGTAGGGACTTTTAAG 470
Query 490 TCATCAAACAACACGACGACTACAGGAACATCAAGGGGAAGTAACATATCTAGCAATAGT 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TCATCAAACAACACGACGACTACAGGAACATCAAGGGGAAGTAACATATCTAGCAATAGT 530
Query 550 GGGTTCTCTGTGGCAAGTGGTGAAGATGCTTACCCCGATGGTCAGATACTTCCCATTCCG 609
|| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 531 GGCTTCTCTGTGGCAAGTGGTGAAGATGCTTATCCCGATGGTCAGATACTTCCTATTCCG 590
Query 610 AATTTGAGGATATTCAGCTTAGCAGAACTTAGAGCTTCAACAAGGAATTTCAGGTCTGAG 669
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 591 AATTTGAGGATATTCAGCTTAGCAGAACTTAGAGCTGCAACAAGGAATTTCAGGTCTGAG 650
Query 670 AATGTTCTTGGAGAGGGAGGATTTGGGAAAGTCTTTAAAGGCTGGCTTGAAGACAAGACT 729
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 651 AATGTTCTTGGAGAGGGAGGATTTGGTAAAGTCTTTAAGGGCTGGCTTGAAGACAAGACG 710
Query 730 CCAGGGAAACAAAGCAACGGAACTGTGATTGCTGTTAAGAAACTGAATGCAGAAAGCTTC 789
| |||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 GCTGGGAAACACAGTAATGGAACTGTGATTGCTGTTAAGAAACTGAATGCAGAAAGCTTC 770
Query 790 CAAGGATTCGAAGAATGGCAATGTGAAGTGAATTTTCTTGGGAGGGTTTCTCATCCAAAC 849
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 CAAGGATTCGAGGAATGGCAATGTGAAGTGAATTTTCTTGGGAGGGTTTCTCATCCAAAC 830
Query 850 CTCGTGAAGCTGTTGGGATACTGCTTGGAAGGTGAAGAGTTGCTTCTTGTGTATGAGTAT 909
|| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 831 CTGGTGAAACTGTTGGGATATTGCTTGGAAGGTGAAGAATTGCTTCTTGTGTATGAGTAT 890
Query 910 ATGCAAAAAGGGAGCTTAGAGAATCATCTCTTCCGAAAGGGGTCTGCCGTTCAGCCACTC 969
||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||| |||
Sbjct 891 ATGCAGAAAGGGAGCTTAGAGAATCATCTCTTCCGAAAGGGCTCTTCCGTTCAGCCGCTC 950
Query 970 TCATGGGAGATAAGGCTTAAGATTGCAATAGGAGCAGCTAAAGGCTTAGCATTCTTACAC 1029
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 951 TCATGGGAGATAAGGCTTAAGATTGCAATAGGAGCAGCTAAAGGCTTAGCCTTCTTGCAC 1010
Query 1030 GCTTCAGAGAAGCAAGTAATTTATCGAGACTTCAAAGCGTCAAACATTCTACTTGATGGG 1089
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 GCTTCAGAAAAGCAAGTAATTTATCGAGACTTCAAAGCGTCAAACATTCTACTTGATGGG 1070
Query 1090 TCATATAACGCAAAGATATCAGATTTTGGATTGGCGAAATTAGGACCTTCCGCTAGTCAA 1149
|||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 1071 TCATATAACGCAAAGATATCGGATTTTGGATTGGCGAAATTAGGTCCTTCCGCGAGTCAA 1130
Query 1150 TCTCACATCACAACACGGGTTATGGGTACACACGGTTACGCAGCTCCAGAGTATGTTGCT 1209
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1131 TCTCACATCACAACACGGGTTATGGGTACACATGGTTATGCAGCTCCAGAGTATGTTGCT 1190
Query 1210 ACAGGTCACTTGTATGTAAAGAGCGATGTTTACGGGTTTGGCGTTGTTTTGGCTGAGATC 1269
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1191 ACAGGTCACTTGTATGTAAAAAGTGATGTTTACGGGTTTGGCGTTGTTTTGGCTGAGATC 1250
Query 1270 TTAACTGGTTTACATGCGCTTGATCCTACTCGTCCTACCGGGCAACACAATCTAACCGAA 1329
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1251 TTAACTGGTTTACATGCGCTTGATCCTACCCGTCCTACCGGGCAACACAATCTAACCGAC 1310
Query 1330 TGGATCAAACCTCATCTATCCGAAAGAAGAAAGCTAAGAAGCATAATGGACCCTCGTCTA 1389
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1311 TGGATCAAACCTCATCTATCTGAAAGAAGAAAGCTAAGGAGCATAATGGACCCTCGTCTA 1370
Query 1390 GAAGGAAAATACCCTTTCAAATCTGCTTTCCGAGTAGCTCAACTGGCTCTGAAATGCCTT 1449
||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||
Sbjct 1371 GAAGGAAAATACCCTTTCAAATCCGCTTTCCGAGTCGCTCAACTGGCTTTGAAATGCCTT 1430
Query 1450 GGACCCGAACCCAAAAACCGTCCATCGATGAAAGAAGTGGTGGAATCGCTCGAACTCATC 1509
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1431 GGACCCGAACCCAAAAACCGTCCATCGATGAAAGAAGTGGTTGAATCGCTCGAACTCATC 1490
Query 1510 GAAGCTGCCAATGAGAAACCGTTAGAACGAAGGACCACTAGAGCTTCCCCATCCATCCGT 1569
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1491 GAAGCTGCCAACGAGAAACCGTTAGAACGAAGGACCACTAGAGCTTCGCCATCCATCCGT 1550
Query 1570 CAACAACAAGGCCATTATCGCCCGCAACAACTCTCTTCGTTTCGTCCTAGACAAAACGTG 1629
|||||||||||||||||||||||||||||||||||||| ||||||||| | || | ||||
Sbjct 1551 CAACAACAAGGCCATTATCGCCCGCAACAACTCTCTTCATTTCGTCCTCGGCATACCGTG 1610
Query 1630 TCTCGAGCTCACTAGTGTTGTTTGAAGACACTGAGATTCTTTTCTTAGTTTTGTATTTGT 1689
|||||||||||||||||||||| | || |||| ||||||||||||||
Sbjct 1611 GCTCGAGCTCACTAGTGTTGTTT--------T----TT-TTTT---AGTTTTGTATTTGT 1654
Query 1690 TAA-GATTATCAAAACCCATTCGTATGTATAC 1720
||| ||| | || |||||||||||||||||||
Sbjct 1655 TAAAGATAAACAGAACCCATTCGTATGTATAC 1686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69705148350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5