BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17230.1
Length=1481
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480606 jgi|Araly1|480606|fgenesh2_kg.3__3307__AT2G17230.1 1664 0.0
Ahg907677 jgi|Araly1|907677|Al_scaffold_0002_758 418 6e-116
> Ahg480606 jgi|Araly1|480606|fgenesh2_kg.3__3307__AT2G17230.1
Length=1322
Score = 1664 bits (901), Expect = 0.0
Identities = 1046/1116 (94%), Gaps = 9/1116 (1%)
Strand=Plus/Plus
Query 121 aacaacaacaaacacacaGCAACCGTTAACTCCTTAAATATCCCCTCCGCCGCGGCGGAG 180
|||||||||||||||||| || | |||||||||||||| |||||||||||||||||||||
Sbjct 1 AACAACAACAAACACACAACATCTGTTAACTCCTTAAACATCCCCTCCGCCGCGGCGGAG 60
Query 181 ATT-ACGCTAGTAAACCC-AAAGCTTCCGCCGCGGAGTCTCTCCCTCACATCCTCCAAAA 238
||| | ||| || ||||| ||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 61 ATTGA-GCTCGTTAACCCTAAA-CTTCCGCCGCGAAGTCTCTCACTCACATCCTCCAAAA 118
Query 239 AATTCGAAGGATCTTCAAATCTAGTCCACCTCCGTTACCACATGGGACCAGTCCTCTCAT 298
|||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||| |
Sbjct 119 AATTCGAAGGATCTTCCAATCTAATCCACCTCCGTTACCATATGGGACCAGTCCTCTCTT 178
Query 299 CTTCTCCGATCAACATCTACGTTATCTGGTACGGACAATGGTCACGCCCACACAAATCCC 358
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 179 CTTCTCCGATCAACATCTACGTTATCTGGTACGGACGCTGGTCACGCCCACACAAATCCT 238
Query 359 TAATCAGAGATTTCCTCAATTCTATCTCCGACGCTAAAGCACCTTCTCCCTCCGTCTCCG 418
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| | |
Sbjct 239 TAATCAGAGATTTCCTCAATTCAATCTCCGACGCTAAAGCTCCTTCTCCCTCCGTCGCTG 298
Query 419 AATGGTGGCGCACCGCTTCTCTCTACACAGATCAAACCGGATCCAACGTCTCTAGATCCG 478
|||||||||||||||||||||||||| |||||||||||||| ||||||| || |||||||
Sbjct 299 AATGGTGGCGCACCGCTTCTCTCTACGCAGATCAAACCGGAGCCAACGTGTCAAGATCCG 358
Query 479 TTTTAATCGCCGGAGAATACTCCGATTCTAAATACTCCCACGGCCAACACCTTACTCGTC 538
| ||||||||||| |||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 359 TCTTAATCGCCGGTGAATACTCCGATTCGAATTACTCCCACGGCCAACACCTAACTCGTC 418
Query 539 TCACGATTCAGGAAGTCATCGCCTCCGCCGCCAGATCCGCTTCCTTTCCGGTGGATCATA 598
| |||||||| || || |||||||||||||| ||||||||||| |||||||||||||| |
Sbjct 419 TGACGATTCAAGACGTTATCGCCTCCGCCGCGAGATCCGCTTCGTTTCCGGTGGATCACA 478
Query 599 AAAACGGAATGTATCTAGTTCTGACGTCACACGACGTCACGATGCAAGATTTTTGCCGCG 658
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 479 AAAACGGAATGTATCTAGTTCTGACGTCACACGACGTCACGATGCAAGACTTTTGCCGCG 538
Query 659 CCGTTTGTGGATTTCACTATTTCACTTTCCCGTCGATGGTTGGTTACACTATGCCTTACG 718
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CGGTCTGTGGTTTTCACTATTTCACTTTCCCGTCGATGGTTGGTTACACTATGCCTTACG 598
Query 719 CTTGGGTTGGTCAATCGGGAAAACAATGTCCCGAGGTTTGTGCTTATCCATTTGCTTTAC 778
|||||||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||
Sbjct 599 CTTGGGTTGGTCAATCGGGAAAACAATGTCCCGAAGTTTGTGCTTACCCGTTTGCATTAC 658
Query 779 CGGGTTACATGGGACACGGTGGTCCCGGAGAGCTCCGGCCACCGAACGGAGAGACTGGAG 838
||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct 659 CGGGTTATATGGGTCACGGTGGTCCGGGAGAGCTCCGACCACCGAACGGAGAGACTGGTG 718
Query 839 TAGATGGGATGGTTAGTGTGATTGGTCATGAGTTAGCTGAAGTTGTATCGAATCCGTTGA 898
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TAGATGGGATGGTTAGTGTAATTGGTCATGAGTTAGCTGAAGTTGTATCGAATCCGTTGA 778
Query 899 TTAATGCTTGGTACGCCGGAGAAGATCCGACGGCTCCGACGGAGATCGGTGATTTGTGTG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TTAATGCTTGGTACGCCGGAGAAGATCCGACGGCTCCGACGGAGATCGGTGATTTGTGTG 838
Query 959 AGGGATTGTACGGAAGCGGCGGAGGAGGAGGGTATATTGGTCAAGTTATGAGAGATAGAG 1018
| ||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 839 AAGGATTGTACGGTATCGGCGGAGGAGGAGGGTATATTGGTCAAGTAATGAGAGATAGAG 898
Query 1019 AAGGGAAGACTTTTAATATGAATGGTAAAGGAGGAAGAAAGTTTTTAGTTCAATGGATTT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AAGGGAAGACTTTTAATATGAATGGTAAAGGAGGAAGAAAGTTTTTAGTTCAATGGATTT 958
Query 1079 GGAACCCTAATTTGAAAGCTTGCTCTGGTCCTAACTCTGTCGACTaaaaa-aaCGAAGAA 1137
||||||||||| |||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 959 GGAACCCTAATCTGAAAGCTTGCTCTGGTCCTAACTCTGTGGACTAAAACGAA-GAAGAT 1017
Query 1138 GAAGGTTAATGATGGTGATTTGTGGTAATCACTGAGATAATGATGAAATAACTCGTTAGG 1197
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1018 GAATGTTAATGATGGTGATTTGTGGTAATCACTAAGATAATGATGAAATAACTCGTTAGG 1077
Query 1198 TTTTAG-AAGTGTAACATTATTTTACTTTATGATTT 1232
||| || || |||||||||||||||||| ||| |||
Sbjct 1078 TTT-AGTAA-TGTAACATTATTTTACTTAATGCTTT 1111
Score = 268 bits (145), Expect = 6e-71
Identities = 205/230 (89%), Gaps = 20/230 (9%)
Strand=Plus/Plus
Query 1255 AATGCttttatactgtttttgtggtgaatttgaatgaatctttgattttcacactcactt 1314
||||||||||||||| |||| | ||| |||||||||||| ||||||||||||||||| |
Sbjct 1104 AATGCTTTTATACTG-TTTT-T-GTG--TTTGAATGAATC-TTGATTTTCACACTCAC-T 1156
Query 1315 ttttgtttATTTCAACAGTATT-GGTAATGTTTAAGAGCTTTTAATGTACACTTCGGGAA 1373
||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1157 TTTTGTTTATTTCAACACTATTGGGTAATGTTTAAGAGCTTTTAATGTATACTTCGGGAA 1216
Query 1374 GTGAAAAAGTTTGAATTCAAAATTCTTTAGATATTTTTTCTTCATTTTCTGCATTATT-- 1431
||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||
Sbjct 1217 GTGAAAAAGTTTGAATTCAAA-TTCTTTAGATATTTT--CTTC-TTTTCTGCATTATTTT 1272
Query 1432 -A-----AATAGTACTAGTATAATCGGTGTTTCAATAAATGTAAGTGTAC 1475
| |||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1273 TATTTTTAATACCACTAGTGTAATCGGTGTTTCAATAAATGTAAGTGTAC 1322
> Ahg907677 jgi|Araly1|907677|Al_scaffold_0002_758
Length=525
Score = 418 bits (226), Expect = 6e-116
Identities = 268/289 (93%), Gaps = 0/289 (0%)
Strand=Plus/Plus
Query 321 TATCTGGTACGGACAATGGTCACGCCCACACAAATCCCTAATCAGAGATTTCCTCAATTC 380
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 TATCTGGTACGGACGTTGGTCACGCCCACACAAATCCCTAATCAGAGATTTCCTCAATTC 194
Query 381 TATCTCCGACGCTAAAGCACCTTCTCCCTCCGTCTCCGAATGGTGGCGCACCGCTTCTCT 440
||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||
Sbjct 195 AATCTCCGACGCTAAAGCTCCTTCTCCCTCCGTCACTGAATGGTGGCGCACCGCTTCTCT 254
Query 441 CTACACAGATCAAACCGGATCCAACGTCTCTAGATCCGTTTTAATCGCCGGAGAATACTC 500
||| |||||||||||||| | ||||| ||||||||||| ||||||||||| ||||||||
Sbjct 255 TTACGCAGATCAAACCGGAGCTAACGTATCTAGATCCGTCTTAATCGCCGGTGAATACTC 314
Query 501 CGATTCTAAATACTCCCACGGCCAACACCTTACTCGTCTCACGATTCAGGAAGTCATCGC 560
|||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 315 CGATTCGAAATACTCCCACGGCCAACACCTGACTCGTCTCACGATTCAGGACGTTATCGC 374
Query 561 CTCCGCCGCCAGATCCGCTTCCTTTCCGGTGGATCATAAAAACGGAATG 609
||||||||| ||||||||||| |||||||||||||| ||||| ||||||
Sbjct 375 CTCCGCCGCGAGATCCGCTTCGTTTCCGGTGGATCACAAAAATGGAATG 423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55421306475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5