BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G17240.1

Length=681
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg480607 jgi|Araly1|480607|fgenesh2_kg.3__3308__AT2G17240.1         702    0.0  


> Ahg480607 jgi|Araly1|480607|fgenesh2_kg.3__3308__AT2G17240.1
Length=619

 Score =  702 bits (380),  Expect = 0.0
 Identities = 456/490 (93%), Gaps = 16/490 (3%)
 Strand=Plus/Plus

Query  1    ATAATTCTTGGTTGGTGGATAATAGA--T--TTAGCTCCGTCCCGGAGAACCATGGCGTC  56
            ||||||||||||||||||||||| ||  |  ||||||||||||||| ||| |||||||||
Sbjct  1    ATAATTCTTGGTTGGTGGATAATCGATTTAGTTAGCTCCGTCCCGGGGAATCATGGCGTC  60

Query  57   GCTTTGCTCTGCGAGGTTCCTTCCTTCTCCATCGCTCGA-----TA---TTT-TATCTAC  107
            |||||||||||| | ||||||||||||||||||||||||     ||   ||| |||||||
Sbjct  61   GCTTTGCTCTGCCAAGTTCCTTCCTTCTCCATCGCTCGATGTTCTAGGGTTTCTATCTAC  120

Query  108  GAAGACGAAGATATCCTCCGACTCGCGCTCGCTTGGTTGCTCTTCGTCGCGTGTCTTTGC  167
            |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| || 
Sbjct  121  GAAGACGACGATATCCTCCGACTCGCGCTCGCTTGTTTGCTCTTCGTCGCGTGTCTATGG  180

Query  168  TTTCTCTTCCGTTCACCGTTCTTCTTCGCGTCGCAATCGGAATCAGCTGCAAGTTGTGTC  227
            ||||||||||||||| ||   ||||||||||||||||||||||| ||| || ||||||||
Sbjct  181  TTTCTCTTCCGTTCATCG---TTCTTCGCGTCGCAATCGGAATCCGCTACACGTTGTGTC  237

Query  228  TATGGCTCCTGAGGAAGAAAAGCTCACTCGTCGTAATCCTCTCGATTTCCCAATTGAGTG  287
            ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  238  TATGGCTCCCGAGGAAGAAAAGCTCACTCGTCGCAATCCTCTCGATTTCCCAATTGAGTG  297

Query  288  GGAAAGACCTAAACCTGGGAGGAGGCCTGACATTTTCCCCAAGTTTAGCCCTATGAAGAC  347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  298  GGAAAGACCTAAACCTGGGAGGAGGCCTGACATTTTCCCCAAGTTTAGCCCTATGAAGAC  357

Query  348  ACCATTGCCACCACCGATGCCTTATGATCCTCCggaagaggatgaagaagaggaagagaa  407
            |||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct  358  ACCATTGCCACCGCCGATGCCTTATGATCCTCCTGAAGAAGATGAAGAAGAGGAAGAGAA  417

Query  408  gaaagaagaggaagaagaaaacccagaccaagaagaagaggaacaacccgagaagCAGCA  467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  418  GAAAGAAGAGGAAGAAGAAAACCCAGACCAAGAAGAAGAGGAACAACCCGAGAAGCAGCA  477

Query  468  ATAGATTTTT  477
            ||||||||||
Sbjct  478  ATAGATTTTT  487


 Score =  220 bits (119),  Expect = 8e-57
 Identities = 131/136 (96%), Gaps = 3/136 (2%)
 Strand=Plus/Plus

Query  524  TTTTTTGTTTCAACTTTTGTAGTGTTTTGGAGGAGAAGAAGAAGAGTCAATCTTTTCTCA  583
            |||||||||||||||||||| |||||||||||||||||||| | | ||||||||||||||
Sbjct  487  TTTTTTGTTTCAACTTTTGTTGTGTTTTGGAGGAGAAGAAG-A-A-TCAATCTTTTCTCA  543

Query  584  CATTTAGTTGCTAGATTTAATCTCATACTCGTGTTCGTGTATTATATCTGTGTAATGCCA  643
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  544  CATTTAGTTGCTAGATTTAATCTCATACTCCTGTTCGTGTATTATATCTGTGTAATGCCA  603

Query  644  CAGTTTCAGAAGCTAT  659
            ||||||||||||||||
Sbjct  604  CAGTTTCAGAAGCTAT  619



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25008633552


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5