BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17250.1
Length=1998
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480608 jgi|Araly1|480608|fgenesh2_kg.3__3309__AT2G17250.1 2878 0.0
> Ahg480608 jgi|Araly1|480608|fgenesh2_kg.3__3309__AT2G17250.1
Length=1950
Score = 2878 bits (1558), Expect = 0.0
Identities = 1801/1915 (94%), Gaps = 30/1915 (2%)
Strand=Plus/Plus
Query 35 CTCTCAGCTAAACCCTTCTTCTTCTTCCACCGTCTCCGCCACGAACCAGAG--AAAGCTC 92
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1 CTCTCGGCTAAACCCTTCTTCTTCTTCCACCGTCTCCGCCACGAACCAGAGAAAAACCTC 60
Query 93 AACAATGGCGTCAATCCTCTCAAAGAAGCAGAAGAAGAACGAAAAATACACCTTGAAAGA 152
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 61 AACAATGGCGTCAATCCTCTCAAAGAAGCAGAAGAAGAAAGAAAAATACACATTGAAAGA 120
Query 153 GCTCAAATCATTAGGTCATGACTTACTCACTTCTCGATCTCACATCAATAACCTTCCTCT 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTCAAATCATTAGGTCATGACTTACTCACTTCTCGATCTCACATCAATAACCTTCCTCT 180
Query 213 CCTTCTCACCTTCGTCTCACCAGAATCTCCGCCGCAGTTCGTCGTTGAATCACTCCTCTC 272
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 181 CCTTCTCACCTTCGTCTCACCAGAATCTCCGCCGCAGTTCGTCGTCGAATCTCTCCTCTC 240
Query 273 ACTCCAATCCTTTTTCACTCCTCTACTCTCTCAGCTTCCTCCGACTTCTTCGTCTCCTTC 332
|||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||
Sbjct 241 ACTCCAATCCTTTTTCACTCCTCTTCTCTCTCAGCTTCCTTCGACTTCTTCATCTCCTTC 300
Query 333 TTCAACCAAA---------AC---AGA-G--GACCCTGAAGTTGTGTTCAAAGCTTGGCT 377
|||||||||| | ||| | |||||||||||||||||||||||||||||
Sbjct 301 TTCAACCAAACGTCCTCGTTCTGAAGACGATGACCCTGAAGTTGTGTTCAAAGCTTGGCT 360
Query 378 CAGATCAAAATTTGACGAATTCGTCAAGCTTTTACTCGATGTTCTTGTCTCTCAACAATC 437
|||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 361 CAGATCAAAATTCGACGAATTCGTCAAGCTTTTACTAGATGTTCTCGTCTCTCAACAATC 420
Query 438 AGAAGATTCTCTAAGGGGAATTGTGTTGGGAACATTAATGGAATTTGTAAAGCTTTTGAA 497
|||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 421 AGAAAATTCTCTAAGGGGAATTGTGATGGGGACATTAATGGAATTTGTAAAGCTTTTGAA 480
Query 498 TGCTGGAAGGTTTCATTCTTCAATCTACCACAGATTACTTGATGCTATTATTCACTCTGA 557
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 481 TGTTGGAAGGTTTCATTCTTCAATCTACCACAGATTACTTCATGCTATTATTCATTCTGA 540
Query 558 GGTTGATATTGAGATATTCTTGGATATACTTACTTCAAAGTACTTCAAGTACATTGATGT 617
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 541 AGTTGATATTGAGATATTCTTGGATATACTTACCTCAAAGTACTTCAAGTACATCGATGT 600
Query 618 CCGCTATTTTACATACATCAGCATGGAAAAGTTTGTGAAAACATTGGAAGCATCAGTGTC 677
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCGCTATTTTACCTACATCAGCATGGAAAAGTTTGTGAAAACATTGGAAGCATCAGTGTC 660
Query 678 TGCTGATAGAACTGTGATCGAAAATAATGAGGCTGAGAGTGATTCAAAAGAAAGCCTAGA 737
||||||||| || | | ||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 661 TGCTGATAGGACGGCGGTCGAAAATAGTGAGGCTGAGAATGATTCAAAAGAAAGCCTAGA 720
Query 738 ACTCTCTGTTCGCAAGATCTATCAAGTTTTATCTCAAATCCCACCTCCTGAGAAACAAGC 797
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 721 ACTCTCTGTTCGCAAGATCTATCAAGTTTTATCTCAAATTCCACCTCCTGAGAAACTAGC 780
Query 798 TGAGAAGTCTCAACACGAGATGTGGAGTGGGTCAGATGAAAGTATTAGTGAGAAGCCGAC 857
||| |||||||| |||||||||||||||||||||||||||| || ||||||||| |||||
Sbjct 781 TGAAAAGTCTCACCACGAGATGTGGAGTGGGTCAGATGAAAATAGTAGTGAGAAACCGAC 840
Query 858 AGATAAAAAGAAGAAAACTGAGAAAGGAGACAGCACTCTCCTTTCTCCGGCAACAATTAG 917
|||||||||||| ||||||||| |||||||||||||||||||||||||| | ||||||||
Sbjct 841 AGATAAAAAGAAAAAAACTGAGGAAGGAGACAGCACTCTCCTTTCTCCGACTACAATTAG 900
Query 918 CAAGAGGATGAAGTTGAAGTTCACTAAAGCATGGATTTCATTTCTCAGACTGCCTCTTCC 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CAAGAGGATGAAGTTGAAGTTCACTAAAGCATGGATTTCATTTCTCAGACTGCCTCTTCC 960
Query 978 CATTGATGTGTACAAGGAGGTTCTTGCCAGTATTCACCTGACAGTCATTCCCCATCTATC 1037
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 961 CATTGATGTTTACAAGGAGGTTCTTGCTAGTATTCACCTGACAGTCATTCCCCATCTATC 1020
Query 1038 TAATCCTACAATGTTATGCGACTTTTTAACAAAATCGTACGACATTGGGGGTGTTGTCAG 1097
|||||||||||||||||||||||| || |||||||| || ||||||||||| ||||||||
Sbjct 1021 TAATCCTACAATGTTATGCGACTTCTTGACAAAATCATATGACATTGGGGGAGTTGTCAG 1080
Query 1098 TGTGATGGCTCTTAGCAGTCTCTTCATCCTCATGACCCAACATGGTTTGGAGTATCCGTT 1157
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TGTGATGGCTCTTAGCAGTCTCTTCATCCTCATGACCCAACATGGTTTGGAGTATCCAAA 1140
Query 1158 CTTTTATGAAAAACTGTATGCGTTACTGGTTCCTTCTGTCTTTGTGGCAAAGCACCGAGC 1217
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CTTTTATGAAAAACTGTATGCATTACTGGTTCCTTCTGTCTTTGTGGCAAAGCACCGAGC 1200
Query 1218 AAAATTTCTTCAGCTTCTTGACGCATGCCTGAAGTCGTCAATGCTTCCAGCATATCTGGC 1277
|||||||||||||||||| || || ||||||||||| |||||||||||||||||||||||
Sbjct 1201 AAAATTTCTTCAGCTTCTCGATGCTTGCCTGAAGTCATCAATGCTTCCAGCATATCTGGC 1260
Query 1278 AGCTTCATTCACAAAGAAACTAAGCAGATTGTCACTTTCCATTCC-CCCTGCGGGATCGT 1336
||||||||||||||||||||||||||||||||| ||||||||||| ||| || |||||||
Sbjct 1261 AGCTTCATTCACAAAGAAACTAAGCAGATTGTCGCTTTCCATTCCTCCC-GCTGGATCGT 1319
Query 1337 TGGTCATAACAGCTTTGATCTACAACCTTTTACGAAGAAATCCTACAATCAACCATCTTG 1396
||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1320 TGGTCATTACGGCTTTGATCTACAACCTTTTACGAAGACATCCTACAATCAACCATCTTG 1379
Query 1397 TGCAGGAAATCGTTGAAAATGCCGATGAAGCCAACACAGAGGCTGGTGAACACAATGAGA 1456
||||||||| ||||||||| || |||||| ||| ||||||||||||||| ||| |||||
Sbjct 1380 TGCAGGAAACCGTTGAAAACACCAATGAAGGCAATACAGAGGCTGGTGAAGACAGTGAGA 1439
Query 1457 GCCAACCAAAGACCATCAAAAAGCGAAAGCTTGGTATTGACTATTTCAACAACCAGGAGA 1516
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1440 GCCAACCAAAGACCATCAAAAAGCGAAAGCCTGGTATTGACTATTTCAACAACCAGGAGA 1499
Query 1517 GTGATCCCAAGAAATCTGGAGCCTTAAAAAGTTCTCTTTGGGAGATCGACACTTTGCGCC 1576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 GTGATCCCAAGAAATCTGGAGCCTTAAAAAGTTCTCTTTGGGAGATCGACACTTTGCGCC 1559
Query 1577 ATCATTACTGTCCACCAGTTTC-ACGGTTTATCTCATCTCTAGAAACTAATCTAACCATC 1635
|||||||||| || |||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1560 ATCATTACTGCCCCCCAGTTTCGA-GGTTTATCTCATCTCTAGAAACTAATCTAACCATC 1618
Query 1636 AGATCGAAAACCACGGAAATGAAAATTGAAGATTTTTGCTCTGGTTCATATGCCACCATA 1695
||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1619 AGATCAAAAACCACTGAAATGAAAATTGAAGATTTTAGCTCTGGTTCATATGCCACCATA 1678
Query 1696 TTTGGGGACGAGATTCGGAGAAGGGTAAAGCAAGTTCCTTTAGCGTTCTACAAAACGGTT 1755
||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1679 TTTGGAGACGAGATTCGTAGAAGGGTAAAGCAAGTTCCTTTAGCGTACTACAAAACGGTT 1738
Query 1756 CCAACATCTCTGTTTGCGGATTCAGATTTTCCTGGGTGGACGTTCACTATTCCACAAGAG 1815
||||||||||||||||| |||||||||||||| |||||| | ||||| ||||||||||||
Sbjct 1739 CCAACATCTCTGTTTGCAGATTCAGATTTTCCGGGGTGGTCATTCACCATTCCACAAGAG 1798
Query 1816 GAAGGCACATGCTGATTTCTAAGAGTAACCAACTCATGAACTaaaaaaaCTGCAGGCTAT 1875
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 1799 GAAGGCACATGCTGATTTCAAAGAGTAACCAACTCATGAACTAAAAAAACTGCAGG-T-T 1856
Query 1876 TCGAAGATTTGTGCTACCAAATTTTGTAGTTTTGATACTGAATGTGTCACATACT 1930
| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1857 ---A---TTTGTGCTACCAAATTTTGTAGTTTTGATACTGAATGTGTCACA-ACT 1904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75113963140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5