BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17260.1
Length=3008
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906549 jgi|Araly1|906549|Al_scaffold_0003_3677 4410 0.0
Ahg491120 jgi|Araly1|491120|fgenesh2_kg.7__553__AT4G35290.1 2054 0.0
> Ahg906549 jgi|Araly1|906549|Al_scaffold_0003_3677
Length=2766
Score = 4410 bits (2388), Expect = 0.0
Identities = 2641/2767 (95%), Gaps = 2/2767 (0%)
Strand=Plus/Plus
Query 115 ATGAATTGGGTTCTATTGAGCTTCATCATTGTTCTTGGTGGTGGGTTGCTACTTTCAGAG 174
|||||||||||||||| |||||| | ||||||||||||||||||||| |||||||||||
Sbjct 1 ATGAATTGGGTTCTATGGAGCTTTGTTATTGTTCTTGGTGGTGGGTTGTTACTTTCAGAG 60
Query 175 GGAGCTTCTAGTTCTAGGCCTCCTGTTATTAAAGTTGGTGCTATATTTGGTTTAAACACC 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGAGCTTCTAGTTCTAGGCCTCCTGTTATTAAAGTTGGTGCTATATTTGGTTTAAACACC 120
Query 235 ATGTACGGTGAAACTGCAAATATCGCCTTTAAAGCTGCTGAGGAAGATGTTAACTCTGAT 294
||||||||||||||||| |||||||||||||||||||||||||||||||| || || |||
Sbjct 121 ATGTACGGTGAAACTGCGAATATCGCCTTTAAAGCTGCTGAGGAAGATGTCAATTCCGAT 180
Query 295 CCTAGCTTCCTTGGTGGATCGAAATTGCGGATTTTGATGAATGATGCTAAACGTAGTGGC 354
||||||||||| ||||||||||| |||| |||||||||||||||||||||||| |||||
Sbjct 181 CCTAGCTTCCTCGGTGGATCGAAGTTGCAGATTTTGATGAATGATGCTAAACGCAGTGGA 240
Query 355 TTCCTCAGCATCATGGGAGCATTGCAATTCATGGAGACTGATGTAGTGGCTATAATTGGT 414
||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||
Sbjct 241 TTCCTCAGCATCATGGGAGCATTGCAATTCATGGAGACTAATGCAGTGGCGATAATTGGT 300
Query 415 CCACAGACATCAATAATGGCTCATGTGTTGTCTCATCTTGCCAATGAGCTTACTGTTCCG 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCACAGACATCAATAATGGCTCATGTGTTGTCTCATCTTGCCAATGAGCTTACTGTTCCG 360
Query 475 ATGTTGTCATTTACAGCTCTTGACCCTACCCTCTCTCCACTCCAATTCCCATTCTTTGTC 534
|||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 361 ATGTTGTCATTTACGGCTCTTGATCCTACCCTGTCTCCACTCCAATTCCCATTCTTTGTC 420
Query 535 CAAACAGCACCTAGTGATCTGTTTCTGATGCGTGCCATTGCAGAGATGATCACTTACTAT 594
|||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 421 CAAACAGCACCTAGTGATCTGTTTCTGATGCGCGCCATTGCAGAGATGATTACATACTAT 480
Query 595 GGCTGGTCAGATGTGGTGGCATTATATAATGATGATGATAATAGTAGAAATGGCGTTACA 654
|| |||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 481 GGTTGGTCAGATGTGGTGGCATTATATAACGATGATGATAACAGCAGAAATGGCGTTACA 540
Query 655 GCGTTAGGCGATGAGCTTGAAGAGAGGCGTTGCAAGATTTCTTACAAGGCAGTACTTCCT 714
||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||
Sbjct 541 GCGTTAGGCGATGAGCTTGAAGAGAGGCGCTGCAGGATTTCTTACAAGGCTGTACTTCCG 600
Query 715 TTGGATGTTGTGATTACTAGTCCAGTTGAGATTATAGAGGAGTTGATTAAGATACGGGGA 774
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 TTGGATGTTGTGATTACTAGTCCAGTTGAGATTATAGAGGAGTTGATTAAGATCCGGGGA 660
Query 775 ATGGAGTCTCGGGTAATCGTTGTGAACACTTTCCCAAATACAGGCAAGATGATCTTTAAG 834
||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATGGAATCTCGGGTTATCATTGTGAACACTTTCCCAAATACAGGCAAGATGATCTTTAAG 720
Query 835 GAAGCAGAGAGATTAGGGATGATGGAGAAAGGTTATGTTTGGATAGCTACAACTTGGTTG 894
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 721 GAAGCAGAAAGATTAGGGATGATGGAGAAAGGCTATGTTTGGATAGCTACAACTTGGTTG 780
Query 895 TCTTCTGTGCTAGATTCAAATTTGCCTTTGGATACCAAATTAGTCAATGGAGTTCTTACA 954
|||||| |||||||||||||||| |||||||||||||||||| ||||||||||||| |||
Sbjct 781 TCTTCTCTGCTAGATTCAAATTTTCCTTTGGATACCAAATTACTCAATGGAGTTCTAACA 840
Query 955 CTGCGTCTTCACACGCCAGATTCTAGAAAGAAGAGGGACTTTGCAGCACGGTGGAAGAAC 1014
||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 841 CTGCGTCTTCATACGCCAGAATCGAGAAAGAAGAGGGACTTTGCAGCACGGTGGAAGAAC 900
Query 1015 AAGTTGAGTAATAATAAGACTATTGGGTTAAATGTCTATGGTCTGTATGCTTATGATACT 1074
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 901 AAGTTGAGTAATAATAAGACTATTGGGTTGAATGTCTATGGTCTGTATGCTTATGATACT 960
Query 1075 GTCTGGATCATTGCTCGAGCCGTTAAGACACTTTTGGAAGCTGGAGGTAATCTTTCTTTC 1134
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||
Sbjct 961 GTCTGGATCATTGCTCGAGCCATTAAGACACTTCTGGAAGCTGGAGGTAATCTTTCCTTC 1020
Query 1135 TCCAATGATGCAAAGTTAGGCAGCTTGAAAGGTGAGGCGTTGAATCTAAGTGCATTAAGC 1194
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1021 TCCAGTGATGCAAAGTTAGGCAGCTTGAAAGGTGAGGCATTGAATCTAAGTGCATTAAGC 1080
Query 1195 AGATTTGATCAAGGATCACAACTTCTTGATTATATTGTGCATACAAAGATGTCTGGTCTA 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1081 AGATTTGATCAAGGATCACAACTTCTTGATTATATTGTGCATACAAAGATGTCCGGTCTA 1140
Query 1255 ACTGGTCCGGTTCAATTTCATCCAGACAGATCAATGCTACAGCCTTCATATGATATTATC 1314
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1141 ACTGGTCCGGTTCAATTTCATCCAGACAGATCAATGCTACATCCTTCATATGATATTATC 1200
Query 1315 AACTTGGTTGATGACCGGGTTCACCAAATAGGTTACTGGTCTAACTATTCTGGTCTTTCT 1374
|| |||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AATTTGGTTGATGACAGCATTAACCAAATAGGTTACTGGTCTAACTATTCTGGTCTTTCT 1260
Query 1375 ATTGTACCGCCTGAATCATTTTACAGCAAACCTCCTAACCGTTCTAGCTCAAACCAACAT 1434
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1261 ATTGTACCGCCTGAATCATTTTACAGCAAACCTCCTAACCATTCTAGCTCAAACCAACAT 1320
Query 1435 CTGAACTCTGTAACTTGGCCTGGTGGTACTTCAGTTACGCCTCGTGGATGGATTTTTCGT 1494
|||||||||||||||||||||||||| |||||| |||| ||||| |||||| ||||||||
Sbjct 1321 CTGAACTCTGTAACTTGGCCTGGTGGGACTTCAATTACACCTCGCGGATGGGTTTTTCGT 1380
Query 1495 AACAATGGAAGGCGGCTAAGAATTGGTGTTCCTGATAGAGCAAGCTTCAAGGACTTTGTT 1554
||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1381 AACAATGGAAGGCGGTTGAGAATCGGTGTTCCTGATAGAGCAAGCTTCAAGGACTTTGTC 1440
Query 1555 TCAAGGGTCAATGGAAGTAGCAACAAAGTTCAAGGATATTGCATTGATGTATTTGAAGCT 1614
||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1441 TCAAGAGTCAATGGAAGTAGCAACAAAGTACACGGATATTGCATTGATGTATTTGAAGCT 1500
Query 1615 GCAGTGAAACTGCTTTCTTATCCGGTTCCTCACGAGTTCATCTTTTTCGGAGATGGTTTG 1674
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1501 GCGGTGAAACTGCTTTCTTATCCGGTTCCTCACGAGTTCATCTTTTTCGGAGATGGTCTA 1560
Query 1675 ACGAATCCAAACTACAATGAGCTGGTCAACAAGGTCACCACTGGGGTTGACTTTGATGCT 1734
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1561 ACGAATCCAAACTACAATGAGCTGGTCAACAAGGTCACTACTGGGGTGGACTTTGATGCT 1620
Query 1735 GTTGTAGGCGACATAGCCATTGTCACCAAACGGACCAGGATTGTGGATTTCACCCAGCCA 1794
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1621 GTTGTAGGCGACATAGCCATTGTCACCAAGCGGACCAAGATTGTGGATTTCACCCAGCCA 1680
Query 1795 TACATTGAGTCAGGCCTTGTCGTTGTTGCTCCTGTCACAAGACTTAACGAAAATCCTTGG 1854
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1681 TACATTGAGTCAGGCCTCGTCGTTGTTGCTCCTGTCACAAGACTTAACGACAATCCTTGG 1740
Query 1855 GCCTTTTTACGCCCGTTTACTCTTCCTATGTGGGCAGTAACAGCATCtttttttGTTATT 1914
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1741 GCCTTTTTACGCCCGTTTACTCTTCCTATGTGGGCAGTAACAGCATCTTTTTTCGTTATT 1800
Query 1915 GTTGGAGCTGCAATATGGATTCTTGAACACCGTATAAATGATGAGTTTCGTGGTCCACCA 1974
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1801 GTTGGAGCTGCAATATGGATTCTTGAACACCGTATAAATGATGAGTTTCGTGGTCCGCCA 1860
Query 1975 AGGAGACAGATCATTACCATTCTCTGGTTCACCTTTTCGACGATGTTTTTCTCCCATAGA 2034
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1861 AGAAGACAAATCATTACCATTCTCTGGTTCACCTTTTCGACGATGTTTTTCTCCCACAGA 1920
Query 2035 GAGACTACAGTTAGCACACTTGGTCGTATGGTGCTTCTGATATGGCTTTTTGTGGTTCTG 2094
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 GAGACTACAGTGAGCACGCTTGGTCGTATGGTGCTTCTGATATGGCTTTTTGTGGTTCTG 1980
Query 2095 ATCATTACATCTAGCTACACAGCGAGTCTCACATCAATACTTACAGTGCAACAGCTTAAT 2154
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 1981 ATCATTACATCTAGCTACACAGCGAGTCTTACATCGATACTTACAGTGCAACAGCTCAAT 2040
Query 2155 TCACCTATAAAAGGAGTAGATACACTCATCAGTAGCACTGGTCGTATTGGTTTCCAGGTT 2214
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 2041 TCACCTATAAAAGGAGTAGATACACTCATCAGTAGCAGTGGTCGTATTGGCTTCCAGGTT 2100
Query 2215 GGTTCTTTTGCTGAAAACTACATGACCGATGAGCTTAACATTGCCAGCTCCAGACTTGTG 2274
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2101 GGTTCTTTTGCTGAAAACTACATGACCGATGAGCTTAACATTGCCAGATCCAGACTTGTG 2160
Query 2275 CCTCTCGCCTCCCCTGAAGAATATGCTAATGCGCTTCAAAATGGCACTGTTGCAGCGATT 2334
||||||||||| ||||| |||||||||||||| ||||||||||| |||||||| || |||
Sbjct 2161 CCTCTCGCCTCTCCTGAGGAATATGCTAATGCACTTCAAAATGGTACTGTTGCTGCAATT 2220
Query 2335 GTTGATGAACGTCCTTATATTGATCTCTTCCTCTCAGATTACTGTAAGTTTGCCATCAGA 2394
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 2221 GTTGATGAACGTCCTTATATTGATCTCTTCCTTTCAAATTACTGTAAGTTTGCCATCAGA 2280
Query 2395 GGCCAAGAATTCACCAGATGCGGTTGGGGATTTGCATTCCCAAGAGACTCTCCTTTAGCA 2454
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2281 GGCCAAGAATTCACCAGATGCGGTTGGGGATTTGCATTCCCGAGAGACTCTCCTTTAGCA 2340
Query 2455 GTTGACATGTCAACCGCGATTCTTGGTCTATCCGAAACTGGAGAGCTTCAGAAGATCCAT 2514
|||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 2341 GTTGACATGTCAACCGCGATTCTTGGGCTATCCGAAACTGGCGAACTTCAGAAGATCCAT 2400
Query 2515 GACCGATGGCTTTCGAAATCCAACTGCAGCAGCCCGCATGGGTCTCAGTCAGGTGACTCA 2574
||| |||||| |||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 2401 GACAAATGGCTGTCGAAATCTAACTGCAGCAGCCCGCACGGGTCTCAGTCAGGTGACTCA 2460
Query 2575 GAACAGCTCAACGTGCATAGCTTCTGGGGTATGTTCCTTGTGGTTGGGATAGCCTGTCTC 2634
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2461 GAACAGCTCAACGTGCATAGCTTCTGGGGCATGTTCCTTGTGGTTGGGATAGCCTGTCTC 2520
Query 2635 GTCGCTCTCTTTATCCACTTCTTCAAAATAATCCGCGACTTCTGCAAAGACACACCTGAA 2694
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||
Sbjct 2521 GTCGCTCTCTTTATCCACTTCTTCAAAATAGTCCGCGACTTCTGCAAACACACACATGAA 2580
Query 2695 GTAGTAGTAGAAGAAGCTATACCTTCACCAAAATCTTCACGTTTAACAAAGCTACAGACT 2754
|||| || ||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 2581 GTAGAAGAAGAAGAAGCTATACCTTCACCAAAAGCTTCACGTTTGACAAAGCTACAGACT 2640
Query 2755 TTTTTAGCATTTGTTGATGA-AAAGGAAGAAGAAACCAAGCGAAGGTTAAAGCGCAAAAG 2813
||| |||||||||||||||| |||| |||||||||| ||||||||||| |||||||||||
Sbjct 2641 TTTCTAGCATTTGTTGATGAGAAAG-AAGAAGAAACAAAGCGAAGGTTCAAGCGCAAAAG 2699
Query 2814 AAACAACGATCATTCTATGAATGCCAATAGCATTATCTCGAGGACTGCATCTAGAAGACC 2873
||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 2700 AAACAACGATCTTTCTATGAATGCGAATAGCATTATCTCGAGGAGTGCATCTAGAAGACC 2759
Query 2874 CATATGA 2880
||||||
Sbjct 2760 TATATGA 2766
> Ahg491120 jgi|Araly1|491120|fgenesh2_kg.7__553__AT4G35290.1
Length=2998
Score = 2054 bits (1112), Expect = 0.0
Identities = 2244/2775 (81%), Gaps = 139/2775 (5%)
Strand=Plus/Plus
Query 123 GGTTCTATTGAGCTTCATCATTGTTCTTGGTGGTGGGTTGCTACTTTCAGAGGGAGCTTC 182
|||||| ||||||||||| || ||||||||| |||| | || ||||||||||||||||
Sbjct 124 GGTTCTGTTGAGCTTCATTGTTCTTCTTGGTGATGGGAT--TA-TTTCAGAGGGAGCTTC 180
Query 183 TAGTTCTAGGCCTCCTGTTA--TTAAAGTTGGTGCTATATTTGGTTTAAACACCATGTAC 240
| |||||| | |||| || | ||||| || ||||| ||||| | | | |||
Sbjct 181 -A-----AGGCCT-C-GTTATGTTGATGTTGGAGCAATATTCAGTTTAGGGA-C-TTTAC 230
Query 241 --GGTGAAACTGCAAATATCGCCTTTAAAGCTGCTGAGGAAGATGTTAACTCTGATCCTA 298
|||||| | ||||||| ||| | |||| ||| |||| ||||| || |||||||||
Sbjct 231 ATGGTGAAGTTACAAATATTGCCATGAAAGTTGCAGAGGGTGATGTAAATTCTGATCCTC 290
Query 299 GCTTCCTTGGTGGATCGAAATTGCGGATTTTGATGAATGATGCTAAACGTAGTGGCTTCC 358
||||||||||||||| |||||||| || || | ||||||| || |||| ||| ||||
Sbjct 291 TCTTCCTTGGTGGATCAAAATTGCGTATAACGACGTATGATGCCAAGCGTAATGGATTCC 350
Query 359 TCAGCATCATGGGAGCATTGCAATTCATGGAGACTGATG-TAGTGGCTATAATTGGTCCA 417
||| ||||||||||||||||||||||||||||||||||| | |||||||| ||||||||
Sbjct 351 TCACCATCATGGGAGCATTGCAATTCATGGAGACTGATGCT-GTGGCTATCATTGGTCCT 409
Query 418 CAGACATCAATAATGGCTCATGTGT-TGTCTCATCTTGCCAATGAGCTTACTGTTCCGAT 476
||||||||||||||||||||||| | ||||||||||||| |||||||||| ||| || ||
Sbjct 410 CAGACATCAATAATGGCTCATGT-TCTGTCTCATCTTGCAAATGAGCTTAGTGTGCCTAT 468
Query 477 GTTGTCATTTACAGCTCTT-GACCCTACCCTCTCTCCACTCCAATTCCCATTCTTTGTCC 535
| ||||||| || ||| || ||||||| ||| || | ||||| ||||| ||||||||||
Sbjct 469 GCTGTCATTCACGGCT-TTAGACCCTAGCCTATCGGCGCTCCAGTTCCCGTTCTTTGTCC 527
Query 536 AAACAGCACCTAGTGATCTGTTTCTGATGCGTGCCATTGCAGAGATGATCACTTACTATG 595
||||||||||||| ||||| ||| | |||||||||||||| || ||||| | |||||| |
Sbjct 528 AAACAGCACCTAGCGATCTCTTTTTAATGCGTGCCATTGCGGAAATGATAAGTTACTACG 587
Query 596 GCTGGTCAGATGTGGTGGCATTATATAATGATGATGATAATAGTAGAAATGGCGTTACAG 655
| |||||||| ||||| ||||| || ||||||||||| || |||||||| || | ||||
Sbjct 588 GTTGGTCAGAGGTGGTTGCATTGTACAATGATGATGACAACAGTAGAAACGGTATAACAG 647
Query 656 CGTTAGGCGATGAGCTTGAA-GAGAGGCGTTGCAAGATTTCTTACAAGGCAGTACTTCCT 714
| |||||||||||||| ||| || ||||| ||||||||||| |||||||| || ||||||
Sbjct 648 CCTTAGGCGATGAGCTCGAAGGA-AGGCGCTGCAAGATTTCATACAAGGCTGTGCTTCCT 706
Query 715 TTGGATGTTGTGATTACTAGTCC-AGTTGAGATTATAGAGGAGTTGATTAAGATAC-GGG 772
|||||||| |||||||| ||||| | |||||| || || |||||| ||||||| | ||
Sbjct 707 TTGGATGTGGTGATTACGAGTCCTCG-TGAGATCATTGATGAGTTGGTTAAGATTCAAGG 765
Query 773 GAATGGAGTCTCGGGTAATCGTTGTGAACACTTTCCC-AAATACAGGCAAGATGATCTTT 831
| ||||| |||||||| ||| |||||||||||||||| | | ||||| | ||||||||||
Sbjct 766 G-ATGGAATCTCGGGTTATCATTGTGAACACTTTCCCTAGA-ACAGGTAGGATGATCTTT 823
Query 832 AAGGAAG--CAGAGAGATTAGGGATGATGGAGAAAGGTTATGTTTGGATAGCTACAACTT 889
|||||| |||| || || || |||||||||||||| ||||||||||||||||||||||
Sbjct 824 GAGGAAGCCCAGA-AGCTT-GGCATGATGGAGAAAGGCTATGTTTGGATAGCTACAACTT 881
Query 890 GGTTGTCTTCTGTGCTAGATTCAAATT-TGCCTTTGGATACC-A-AAT--T--A-GTC-- 939
||||| ||||| || ||||||| | || || ||| | || | ||| | | ||
Sbjct 882 GGTTGACTTCTCTGTTAGATTC-AGTTAACCCGTTGCCTTCCAAGAATGCTGAATCTCTT 940
Query 940 A-ATGGAGTTCTTACACTGCGTCTTCACACGCCAGATTCTAGAAAGAAGAGGGACTTTGC 998
| | ||||| || || || ||| ||||||| ||| |||| |||||||| | || ||||
Sbjct 941 AGA-GGAGTGCTCACTCTTCGTATTCACACACCAAATTCAAGAAAGAAAAAAGATTTTGT 999
Query 999 AGCACGGTGGAAGAACAAGTTGAGTAATAATAAGACTATTGGGTTAAATGTCTATGGTCT 1058
||||||| | |||||||||||| |||| |||| | || ||||| || ||||| ||
Sbjct 1000 GGCACGGT-G--GAACAAGTTGAG---TAATGGGACTGTCGGTTTAAACGTTTATGGACT 1053
Query 1059 GTATGCTTATGATACTGTCTGGATCATTGCTCGAGCCGTTAAGACACTTTTGGA-AGCTG 1117
||||||||||||||||||||||||||||||||||| |||||||||||| | || ||| |
Sbjct 1054 TTATGCTTATGATACTGTCTGGATCATTGCTCGAGCTGTTAAGACACTTCTAGATAGC-G 1112
Query 1118 GAGGTAATCTTTCTTTCTCCAATGATGCAAAGTTAGGCAGCTTGAAAGGTG-AGGCGT-- 1174
||| |||| |||| ||||| | || |||||||| |||| ||| || | ||| ||
Sbjct 1113 GAGCTAATATTTCCTTCTCGAGCGACCCAAAGTTAACCAGCATGACGGGAGGAGG-GTCA 1171
Query 1175 -TGAATCTAAGTGCATTAAGCAGATTTGATCAAGGATCACAACTTCTTGATTATATTGTG 1233
|||||||| ||||||| |||| |||||| |||||||||||| |||||||||||||||||
Sbjct 1172 CTGAATCTAGGTGCATTGAGCATATTTGACCAAGGATCACAATTTCTTGATTATATTGTG 1231
Query 1234 CATACAAAGATGTCTGGTCTAACTGGTCCGGTTCAATTTCATCCAGACAGATCAATGCTA 1293
||||||| ||| ||||||| || |||| | || |||| ||| |||||||||||| ||
Sbjct 1232 AATACAAACATGACTGGTCTTACAGGTCAAATACACTTTCTTCCTGACAGATCAATGATA 1291
Query 1294 CAG-CCTTCATATGATATTATCAACTTGGTTGATGACCGGGTTCAC-CAAATAGGTTACT 1351
||| ||| ||||||| || || ||| ||||||||||| ||||| | || ||||| || |
Sbjct 1292 CAGGCCT-CATATGACATCATAAACGTGGTTGATGAC-GGGTTTAGGCAGATAGGGTATT 1349
Query 1352 GGTCTAACTATTCTGGTCTTTCTATTGTACCGCCTGAATCATTTTACAGCAAACCTCCTA 1411
|||||||| ||||||| || |||||| |||| ||||| ||| | |||| || ||| | |
Sbjct 1350 GGTCTAACCATTCTGGGCTCTCTATTATACCTCCTGAGTCACTATACAATAAGCCTTCAA 1409
Query 1412 ACCGTTCTAGCTCAAACCAACATCTGAACTCTGTAACTTGGCCTGGTGGTACTTCAGTTA 1471
| ||||| ||||||||||||||||||||| ||| |||||||||||||| ||||| || |
Sbjct 1410 ATCGTTCGAGCTCAAACCAACATCTGAACAATGTGACTTGGCCTGGTGGGACTTCTGTGA 1469
Query 1472 CGCCTCGTGGATGGATTTTTCGTAACAATGGAAGGCGGCTAAGAATTGGTGTTCCTGATA 1531
|||| ||||||||| |||||| |||||| || || | | ||||| ||||| || ||||
Sbjct 1470 CGCCACGTGGATGGGTTTTTCCTAACAACGGGAGAAGATTGAGAATCGGTGTACCCGATA 1529
Query 1532 GAGCAAGCTTCAAGGACTTTGTTTCAAGGGTCAATGGAAGTAGCAACAAAGTTCAAGGAT 1591
||||||| |||||||| ||||| |||||||| ||||||| ||||||||| ||||| |
Sbjct 1530 GAGCAAGTTTCAAGGAATTTGTGTCAAGGGTGGATGGAAG---CAACAAAGTGCAAGGGT 1586
Query 1592 ATTGC-ATTGATGTATTTGAAGCTGCAGTGAAACTGCTTTCTTATCCGGTTCCTCACGAG 1650
|| || |||||||| ||||||||||| || |||||| ||||||||||||||||||| |||
Sbjct 1587 AT-GCCATTGATGTCTTTGAAGCTGCGGTAAAACTGATTTCTTATCCGGTTCCTCATGAG 1645
Query 1651 TTCATC-TTTTTCGGAGATGGTTTGACGAATCCAAACTACAATGAGCTGGTCAACAAGGT 1709
||| || ||||| ||||| ||| | | ||| ||||||| |||||| | |||||||| ||
Sbjct 1646 TTCGTCCTTTTT-GGAGACGGTCTCAAGAACCCAAACTTCAATGAATTTGTCAACAATGT 1704
Query 1710 CACCACTGGGGTTGACTTTGATGCTGTTGTAGGCGACATAGCCATTGTCACCAAACGGAC 1769
||| || ||||| | ||||||||||||||||| |||||||| ||||| || ||||| ||
Sbjct 1705 CACTACCGGGGT--A-TTTGATGCTGTTGTAGGAGACATAGCTATTGTTACAAAACGAAC 1761
Query 1770 CAGGATTGTGGATTTCACCCAGCCATACATTGAGTCAGGCCTTGTCGTTGTTGCTCCTGT 1829
||||||||||||||||| ||||||||||| || ||||| |||||||| |||||||||||
Sbjct 1762 AAGGATTGTGGATTTCACTCAGCCATACATAGAATCAGGGCTTGTCGTGGTTGCTCCTGT 1821
Query 1830 CACAA-GACTTAACGAAAATCCTTGGGCCTTTTTACGCCCGTTTACTCTTCCTATGTGGG 1888
||||| | || ||||| | ||| ||||| || |||||||| ||||| | ||| |||||||
Sbjct 1822 CACAAAG-CTAAACGATACTCCGTGGGCGTTCTTACGCCCTTTTACACCTCCAATGTGGG 1880
Query 1889 CAGTAACAGCATCtttttttGTTATTGTTGGAGCTGCAATATGGATTCTTGAACACCGTA 1948
| || |||||| | ||||| | || |||||| | | |||||||||||||||||| | |
Sbjct 1881 CTGTTACAGCAGCCTTTTTCCTCATCGTTGGATCAGTAATATGGATTCTTGAACATAGAA 1940
Query 1949 TAAATGATGAGTTTCGTGGTCCACCAAGGAGACAGATCATTACCATTCTCTGGTTC--A- 2005
| || |||||||| || || || ||||||| ||| || |||| ||||||||||| |
Sbjct 1941 TCAACGATGAGTTCCGCGGACCTCCAAGGAAACAAATTGTTACTATTCTCTGGTTAGTAA 2000
Query 2006 -C--CTTTTCGACGATGTTTTTCTCCCATAGAGAGA-CTACAGTTAGCACACTTGGTCGT 2061
| ||| || || |||||||||||||| ||||||| | ||||| |||||||| ||||||
Sbjct 2001 ACAGCTTCTCCACAATGTTTTTCTCCCACAGAGAGAAC-ACAGTGAGCACACTCGGTCGT 2059
Query 2062 A-TGGTGCTTCTGATATGGCTTTTTGTGGTTCTGATCATTACATCTAGCTACACAGCGAG 2120
|| |||| ||||| ||||| |||||||| ||||| || || || ||||||||||||||
Sbjct 2060 GCTG-TGCTGCTGATCTGGCTATTTGTGGTACTGATTATAACTTCAAGCTACACAGCGAG 2118
Query 2121 TCTCACATCAATACTTACAGTGCAACAGCTTAATTCACCTATAAAAGGAGTAGATACACT 2180
||| ||||| || ||||||||||||||||| || ||||| || | ||||||||| |||||
Sbjct 2119 TCTTACATCGATTCTTACAGTGCAACAGCTAAACTCACCGATCAGAGGAGTAGACACACT 2178
Query 2181 CATCAGTAGCACTGGTCGTA-TTGG-TTTCCAGGTTGGTTCTTTTGCTGAAAACTACATG 2238
|||||| |||| ||| || | |||| |||| |||| ||||||| ||| ||||||||||||
Sbjct 2179 CATCAGCAGCAGTGGACG-AGTTGGGTTTC-AGGTAGGTTCTTATGCAGAAAACTACATG 2236
Query 2239 ACCGATGAGCTTAACATTGCCAGCTCCAGACTTGTGCCTCTCGCCTCCCCTGAAGAATAT 2298
| |||||||||||||| ||||| ||||||||||| || |||| ||| ||| |||||||
Sbjct 2237 ATTGATGAGCTTAACATCGCCAGATCCAGACTTGTACCACTCGGCTCTCCTAAAGAATAC 2296
Query 2299 GCTA-ATGCGCTTCAAAATGGCACTGTTGCAGCGATTGTTGATGAACGTCCTTATATTGA 2357
||| | || |||||||| || |||||||| || ||||| |||||||| ||||| |||||
Sbjct 2297 GCTGCA-GCTCTTCAAAACGGAACTGTTGCTGCAATTGTCGATGAACGCCCTTACATTGA 2355
Query 2358 TCTCTTCCTCTCAGA-TTACTGTA-AGTTTGCCATCAGAGGCCAAGAATTCACCAGATGC 2415
|||||||||||| || || || | |||||||| ||||||||||||||||||||| |
Sbjct 2356 TCTCTTCCTCTCGGAATTT-TGCGGA-TTTGCCATTAGAGGCCAAGAATTCACCAGAAGT 2413
Query 2416 GGTTGGGGATTTGCATTCCCAAGAGACTCTCCTTTAGCAGTTGACATGTCAACCGCGATT 2475
|| |||||||||||||| |||||||||||||| |||||||| |||||||||||||||||
Sbjct 2414 GGCTGGGGATTTGCATTTCCAAGAGACTCTCCATTAGCAGTCGACATGTCAACCGCGAT- 2472
Query 2476 CTT-GGTCTATCCGAAACTGGAGAGCTTCAGAAGATCCATGACC-GATGGCTTTCGAA-A 2532
||| |||||||| || || ||| ||||||| ||||| |||||| | |||||||| || |
Sbjct 2473 CTTAGGTCTATCTGAGACGGGACAGCTTCAAAAGATTCATGACAAG-TGGCTTTC-AAGA 2530
Query 2533 TCCAACTGCAGCAGCCCGCATGGGTCTCAG--TCAGGTGAC--T-CAGAACAGCTCAA-C 2586
|| |||||||| | || | | |||| |||| |||| ||| | |||||||||| || |
Sbjct 2531 TCTAACTGCAGTAACCAGAA-GGGT-TCAGAGTCAGATGAGGATTCAGAACAGCTTAAAC 2588
Query 2587 GTGCATAGCTTCTGGGGTATG-TTCCTTGTG-GTTGGGATAGCCTGTCTCGTCGCTCTCT 2644
| | |||||||||||| || ||||||||| || ||||| || ||| | ||||||| |
Sbjct 2589 -TCCGTAGCTTCTGGGG-ATTATTCCTTGTGTGT-GGGATCGCTTGTTTTATCGCTCT-T 2644
Query 2645 TT-ATCCACTTCTTCAAAATAATCCGCGACTTCTG-CAAAGACACACCTGAAGTAGTAGT 2702
|| ||| ||||||||| |||| ||||||||||||| | | |||| | ||| | |
Sbjct 2645 TTCATCTACTTCTTCAGAATAGTCCGCGACTTCTGGC---GCCACAGC--AAGCC-T-G- 2696
Query 2703 AG-AAGAAGCTA---TACCTTCACCA-AAATCTTCACGTT-TAACAA-AGCTACAGACTT 2755
|| ||||||||| ||||||||||| ||| |||||||| ||| || | | |||| |
Sbjct 2697 AGGAAGAAGCTACAGTACCTTCACCAGAAAG-TTCACGTTCTAA-AACAT-TGCAGAGAT 2753
Query 2756 TTTTAGCAT-TTGTTGATGAAAAGGAAGAAGAAACCAAGCGAAGGTTAAAGCGCAAAAGA 2814
||||||| | || |||||||||| ||||||||||||||| ||||||| ||||| || ||
Sbjct 2754 TTTTAGCTTATT-TTGATGAAAAAGAAGAAGAAACCAAGAGAAGGTTGAAGCGTAAGCGA 2812
Query 2815 AACAACGATCATTCT 2829
||| | |||| ||||
Sbjct 2813 AACGATGATCTTTCT 2827
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113585110590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5