BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17265.1
Length=1168
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480610 jgi|Araly1|480610|fgenesh2_kg.3__3311__AT2G17265.1 1748 0.0
Ahg353299 jgi|Araly1|353299|fgenesh1_pg.C_scaffold_7000472 215 7e-55
> Ahg480610 jgi|Araly1|480610|fgenesh2_kg.3__3311__AT2G17265.1
Length=1138
Score = 1748 bits (946), Expect = 0.0
Identities = 1076/1140 (94%), Gaps = 4/1140 (0%)
Strand=Plus/Plus
Query 10 TGTTCATCAATGGCAAGTCTTTGTTTCCAATCTCCTTCCAAACCCATTTCCTATTTCCAA 69
||||| | |||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1 TGTTCTTTAATGGCGAGTCTCTGTTTCCAATCTCCTTCCAAACCCATATCCTATTTCCAT 60
Query 70 CCCAAATCCAATCCATCGCCACCGTTATTCGCCAAAGTCTCCGTCTTTCGATGCAGAGCT 129
|| ||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct 61 CCTAAATCCAATCCATCGCCGCCGTTATTCTCGAAAGTCTCCGTCTTTCGATGCAGAGCT 120
Query 130 TCCGTACAAACCCTCGTCGCCGTTGAGCCGGAGCCAGTTTTCGTCTCCGTCAAGACTTTT 189
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 TCTGTACAAACCCTCGTCGCCGTTGAGCCGGAGCCAGTTTTTGTCTCCGTCAAGACTTTT 180
Query 190 GCGCCAGCCACCGTCGCTAATTTGGGACCAGGGTTTGATTTCTTAGGATGTGCCGTCGAT 249
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTCCAGCCACCGTCGCTAATTTGGGACCAGGGTTTGATTTCTTAGGATGTGCCGTCGAT 240
Query 250 GGTCTCGGAGACCATGTGACTCTCCGTGTAGATCCCTCTGTACGAGCCGGTGAGGTCTCA 309
|||||||| |||||||||||||||||||||||||||||||| || ||||||||| | |||
Sbjct 241 GGTCTCGGTGACCATGTGACTCTCCGTGTAGATCCCTCTGTTCGTGCCGGTGAGATTTCA 300
Query 310 ATCTCGGAGATCACCGGAACCACAACAAAACTCAGCACGAACCCTCTCCGGAACTGCGCC 369
|||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||
Sbjct 301 ATCTCGGAGATCACCGGAACCACAGCAAAACTCAGCACAAATCCTCTCCGGAACTGCGCC 360
Query 370 GGAATCGCTGCTATTGCTACGATGAAGATGTTAGGGATCAGATCGGTTGGTTTATCATTA 429
|||||||| || |||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 361 GGAATCGCCGCCATTGCTACGATGAAGATGTTAGGGATTAGATCGGTTGGTTTGTCTTTA 420
Query 430 GATTTGCATAAAGGTCTT-CCTTTAGGTAGCGGTTTAGGTTCTAGTGCAGCTAGTGCCGC 488
|||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 GATTTGCACAAAGG-CTTACCTTTAGGTAGCGGTTTAGGTTCTAGTGCAGCTAGCGCCGC 479
Query 489 CGCAGCTGCTGTGGCGGTTAATGAGATCTTTGGCCGGAAATTAGGGAGTGATCAATTGGT 548
|||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||
Sbjct 480 CGCAGCTGCTGTGGCGGTTAATGAGATCTTTGGCCGGAAACTAGGGAATGATGAATTGGT 539
Query 549 ATTAGCCGGTTTAGAATCGGAAGCGAAAGTCTCCGGTTATCACGCTGATAATATCGCACC 608
||||||||||||||||| ||||| || || ||||||||||| |||||||||||||||||
Sbjct 540 TTTAGCCGGTTTAGAATCAGAAGCTAAGGTTTCCGGTTATCATGCTGATAATATCGCACC 599
Query 609 AGCGATCATGGGTGGATTCGTTTTGATTAGAAACTACGAACCACTTGATTTGAAACCATT 668
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 600 AGCGATCATGGGTGGATTCGTTTTGATTCGAAACTACGAACCGCTTGATTTGAAACCATT 659
Query 669 GAGGTTCCCATCTGATAAAGATCTCTTCTTTGTTCTAGTAAGCCCTGACTTTGAAGCTCC 728
|||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 660 GAGGTTCCCATCGGATAAAGATCTCTTCTTTGTTCTAGTGAGCCCTGAGTTTGAAGCTCC 719
Query 729 AACTAAGAAAATGAGAGCTGCATTGCCTACAGAGATTCCAATGGTTCATCATGTTTGGAA 788
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 720 AACTAAGAAAATGAGAGCTGCATTGCCTACAGAGATTCCAATGGTTCACCATGTTTGGAA 779
Query 789 CAGTAGCCAAGCAGCTGCTTTAGTCGCTGCTGTGTTAGAAGGTGACGCAGTGATGCTTGG 848
|||||| ||||||||||||||||||||||| ||||||||||| ||||| || ||||||||
Sbjct 780 CAGTAGTCAAGCAGCTGCTTTAGTCGCTGCGGTGTTAGAAGGAGACGCGGTAATGCTTGG 839
Query 849 GAAGGCATTGTCGTCGGATAAGATTGTGGAGCCGACTAGAGCGCCGTTGATTCCGGGAAT 908
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 840 GAAGGCATTGTCGTCGGATAAGATTGTGGAGCCGACGAGAGCACCGTTGATTCCTGGAAT 899
Query 909 GGAAGCTGTGAAGAAGGCGGCTTTAGAAGCTGGAGCATTTGGATGTACTATTAGCGGAGC 968
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 900 GGAAGCTGTGAAGAAGGCGGCTTTAGAAGCTGGAGCGTTTGGATGTACGATTAGCGGAGC 959
Query 969 TGGACCAACAGCGGTTGCGGTGATTGATTCGGAGGAGAAGGGTCAAGTCATTGGAGAGAA 1028
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 960 TGGACCAACAGCGGTTGCGGTGATTGATTCAGAGGAGAAGGGTCAAGTGATTGGAGAGAA 1019
Query 1029 GATGGTGGAAGCGTTTTGGAAAGTTGGTCATTTGAAATCTGTTGCTTCTGTGAAGAAGCT 1088
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1020 GATGGTGGAAGCGTTTTGGAAAGTTGGACATTTGAAATCTGTTGCTTCTGTGAAGAAGCT 1079
Query 1089 TGATAATGTTGGTGCTAGGCTTGTCAACAGCGTCTCCAGATGATCTT-TGTGTGCTGTTT 1147
|||||| |||||||||||||||||||||||| ||||||| ||||||| | |||| |||||
Sbjct 1080 TGATAAAGTTGGTGCTAGGCTTGTCAACAGCATCTCCAGGTGATCTTCT-TGTGATGTTT 1138
> Ahg353299 jgi|Araly1|353299|fgenesh1_pg.C_scaffold_7000472
Length=1038
Score = 215 bits (116), Expect = 7e-55
Identities = 203/245 (83%), Gaps = 6/245 (2%)
Strand=Plus/Plus
Query 874 GTGGAGCCGACTAGAGCGCCGTTGATTCCGGGAATGGAAGCTGTGAAGAAGGCGGCTTTA 933
|||||||||| ||||| || ||||||||||||||||||||||||||||| || ||||||
Sbjct 787 GTGGAGCCGAAGAGAGCACCATTGATTCCGGGAATGGAAGCTGTGAAGAAAGCTGCTTTA 846
Query 934 GAAGCTGGAGCATTTGGATGTACTATTAGCGGAGCTGGACCAACAGCGGTTGCGGTGATT 993
||||||||||||||||| || || || || |||||||| ||||| |||||||| |||||
Sbjct 847 GAAGCTGGAGCATTTGGTTGCACAATAAGTGGAGCTGGTCCAACGGCGGTTGCAGTGATC 906
Query 994 GATTCGGAGGAGAAGGGT--CAAGTCATTGGAGAGAAGATGGTGGAAGCGTT-TTGGAAA 1050
|| ||| |||||| ||| | || || |||||||| ||||| |||||||| ||| ||
Sbjct 907 GACACGGCGGAGAAAGGTTTCGAG--ATCGGAGAGAAAATGGTCGAAGCGTTCTTG-AAG 963
Query 1051 GTTGGTCATTTGAAATCTGTTGCTTCTGTGAAGAAGCTTGATAATGTTGGTGCTAGGCTT 1110
|| || | ||||||||| |||||||||||||||| |||||||| | || ||||| |||
Sbjct 964 GTCGGAAACTTGAAATCTATTGCTTCTGTGAAGAAACTTGATAAAATCGGAGCTAGACTT 1023
Query 1111 GTCAA 1115
||||
Sbjct 1024 ATCAA 1028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43574494131
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5