BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17270.1
Length=1555
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480611 jgi|Araly1|480611|fgenesh2_kg.3__3312__AT2G17270.1 2370 0.0
> Ahg480611 jgi|Araly1|480611|fgenesh2_kg.3__3312__AT2G17270.1
Length=1518
Score = 2370 bits (1283), Expect = 0.0
Identities = 1453/1533 (95%), Gaps = 20/1533 (1%)
Strand=Plus/Plus
Query 11 GAAACCTAAATTGAAATTACCATTTTTTCTCTTAAAGATTCGATTTTTCCGCCAACCCGT 70
||||||||||||||||||| || |||| |||||||||||| |||||||||||| || |
Sbjct 1 GAAACCTAAATTGAAATTA-CA--ATTTCCCTTAAAGATTCGTTTTTTCCGCCAA-CC-T 55
Query 71 TCCCGAAAGCTTGGAACTTTATTTGTTGAAAAAGTAAAAGAGAGAGCC-TTGTGTTTATT 129
|||||||||||||| ||||||||||| |||||||| ||| |||||||| |||||||||||
Sbjct 56 TCCCGAAAGCTTGGGACTTTATTTGTAGAAAAAGT-AAA-AGAGAGCCTTTGTGTTTATT 113
Query 130 TCTGAGCCTTGTCTTTGTCCGTGAGACGTGGACGAGCGATCTCCATCAGAAAATGAGAAC 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 TCTGAGCCTTGTCTTTGTCCGTGAGACGTGGACGAGCGATCTCCATCAGAAAATGAGAAC 173
Query 190 CCTTCCCACGTACACACTCTTTGCCTTTCCTTTTATAGCTTTCC-TGTGACGTGTTTCTT 248
|||| |||||| ||||||||||||||| ||| |||||| |||| |||||||||||||||
Sbjct 174 CCTT-CCACGT--ACACTCTTTGCCTTTTCTTCTATAGC-TTCCTTGTGACGTGTTTCTT 229
Query 249 CGTTTCTGGGTTTTGGGTTTACTAGCGAAAACGTCAAAGATCAACTTTTGTTCTGAGAGA 308
|||||||||||||||||||||| || ||||| | |||||| |||||||||||||||||||
Sbjct 230 CGTTTCTGGGTTTTGGGTTTACCAGAGAAAAAGCCAAAGAACAACTTTTGTTCTGAGAGA 289
Query 309 TTACGATTAGGGTTTATCGGGGATTTTGAAACGATTTTTGGTAAGAAGATGACAAGAGTC 368
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 290 TTACGATTAGGGTTTATCAAGGATTTTGAAACGA-TTTTGGTAAGAAGATGACAAGAGTC 348
Query 369 AAGAGTAAACTAGACGAGGAACTGTCGTCTCCTTGGTTTTATACTGTTTGTACCATGGGA 428
||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||
Sbjct 349 AAGAGTAAACTAGACGATGAATTGTCGTCTCCTTGGTTTTATACTGTTTGCACCATGGGA 408
Query 429 GGAATGCTTAGTGCCGGAACAACCCATTTGGCTATAACTCCTCTTGATGTCCTCAAAGTC 488
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 409 GGAATACTTAGTGCTGGAACAACCCATTTAGCTATAACTCCTCTTGATGTCCTCAAAGTC 468
Query 489 AATATGCAGGTGAATCCAGTGAAGTACAATAGCATTCCTTCCGGTTTCTCTACTCTCTTA 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 AATATGCAGGTGAATCCAGTGAAGTACAATAGCATTCCTTCCGGTTTCTCTACTCTCTTA 528
Query 549 AGAGAGCATGGTCATTCTTATCTTTGGAGAGGTTGGTCAGGGAAGCTATTAGGCTATGGT 608
||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 529 AGAGAGCATGGCCATTCCTATCTTTGGAGAGGTTGGTCAGGGAAGCTTTTAGGTTATGGT 588
Query 609 GTTCAAGGTGGATGCAGATTTGGACTCTATGAGTACTTCAAGACACTCTACAGCGATGTG 668
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 589 GTTCAAGGTGGATGCAGATTCGGACTCTATGAGTACTTCAAGACACTCTACAGCAATGTG 648
Query 669 TTACCTAATCATAACAGAACTTCCATATATTTTCTCAGCAGTGCTTCTGCTCAAATATTC 728
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 649 TTACCTAATCATAACAGAACTTCCATATATTTTCTCAGCAGCGCTTCTGCTCAGATATTC 708
Query 729 GCCGATATGGCTTTATGTCCTTTTGAAGCCATAAAAGTTAGAGTTCAGACGCAGCCTATG 788
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 709 GCCGATATGGCTTTATGTCCTTTTGAAGCCATAAAAGTTAGAGTTCAGACGCAGCCCATG 768
Query 789 TTTGCAAAAGGGTTGCTTGATGGATTTCCAAGAGTGTATAGAAGTGAAGGTCTTGCTGGC 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 TTTGCAAAAGGGTTGCTTGATGGATTTCCAAGAGTGTATAGAAGTGAAGGTCTTGCTGGC 828
Query 849 TTCCACAGGGGACTTTTTCCGCTCTGGTGTCGCAATCTTCCATTTTCTATGGTGATGTTC 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 TTCCACAGGGGACTTTTTCCGCTCTGGTGTCGCAATCTTCCATTTTCTATGGTGATGTTC 888
Query 909 TCAACGTTTGAGCAGTCAGTTGAGTTTATATATCAAAAGATTATCCAGAAAAGGAAGCAA 968
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 889 TCAACGTTTGAGCAGTCAGTTGAGTTTATATATCAAAATATTATCCAGAAAAGGAAGCAA 948
Query 969 GATTGCTCTAAAGCTCAACAACTCGGTGTCACATGTCTTGCTGGCTATACTGCTGGAGCC 1028
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 949 GATTGCTCTAAAGCTCAACAACTTGGTGTCACATGTCTTGCTGGCTATACTGCTGGAGCC 1008
Query 1029 GTAGGTACAATCATCTCTAACCCCGCAGATGTGGTTCTTTCGTCTCTCTACAACAACAAA 1088
||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1009 GTAGGTACAGTCATCTCTAACCCCGCAGATGTGGTTCTTTCATCTCTCTACAATAACAAA 1068
Query 1089 GCCAAGAATGTGTTGCAGGCTGTGAGGAATATTGGGTTTGTTGGTCTATTCACCAGAAGC 1148
||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1069 GCCAAGAGTGTGTTGCAGGCTGTGAGGAACATTGGGTTTGTTGGTCTTTTCACCAGAAGT 1128
Query 1149 CTTCCTGTTCGGATCACTATTGTTGGACCTGTCATTACTTTGCAATGGTTCTTTTATGAT 1208
||||| || |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1129 CTTCCCGTCCGGATCACGATTGTTGGACCTGTCATTACTTTGCAATGGTTCTTTTACGAT 1188
Query 1209 GCCATCAAAGTCTTAAGCGGATTCCCTACAAGTGGCGGAGTGAAGAAACCAGTGGATGCA 1268
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1189 GCCATCAAAGTCTTAAGCGGATTCCCTACAAGTGGAGGAGTGAAGAAACCAGTGGATGCA 1248
Query 1269 GCTAAATTATCAGTGTGAAGCTTAGAAGAGTAGATCTATCTCTATCAACAATAAAACCAG 1328
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1249 ACTAAATTATCAGTGTGAAGCTTAGAAGAGTAGACCTATATCTATCAACAATAAAACCAG 1308
Query 1329 GAACTCAAAACATACGGTCATATAAGATTCTCTTGCAAGTAGATAC-GAGGCGTTGTGTA 1387
||||||||||||||| ||||| |||||||||||||| |||| |||| |||||||||||||
Sbjct 1309 GAACTCAAAACATACTGTCATGTAAGATTCTCTTGCGAGTAAATACCGAGGCGTTGTGTA 1368
Query 1388 GCGATTAGAAGGAGCTTTTTGATATTTTC-GTTTCATGCGCAAATGCATTTGTCTTGAAC 1446
| | || |||||| | ||||||| |||| ||||||||||||||||||||| ||| |||
Sbjct 1369 GTGGTTGGAAGGAACATTTTGATCTTTTTTGTTTCATGCGCAAATGCATTT-TCTC-AAC 1426
Query 1447 CCCTGCCTGAAATTGGATTGTAAGTAAAGTGCTAATGA-TGGATATTGCTGTAAACAGAA 1505
|||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1427 CCCTGCCTAAAATTGGATTGTAAGTAAAGTGCTAATGAGTG-ATATTGCTGTAAACAGAA 1485
Query 1506 ACAATGATCTTTAACTGATTGATGTCAAAGGAA 1538
|| ||||||||||||||||||||||||||||||
Sbjct 1486 ACTATGATCTTTAACTGATTGATGTCAAAGGAA 1518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58239984605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5