BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G17280.1 Length=1083 Score E Sequences producing significant alignments: (Bits) Value Ahg480613 jgi|Araly1|480613|fgenesh2_kg.3__3314__AT2G17280.1 1319 0.0 > Ahg480613 jgi|Araly1|480613|fgenesh2_kg.3__3314__AT2G17280.1 Length=950 Score = 1319 bits (714), Expect = 0.0 Identities = 795/835 (95%), Gaps = 2/835 (0%) Strand=Plus/Plus Query 71 ACGAAGGCATAGGTCTTTACCCGCTTCATCGTTGCAAAACCATTCACCTGGTGAGACATG 130 ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 5 ACGAAAGCATAGGTCTTTACCCTCTTCATCGTTGCAAAACCATTCACCTGGTGAGACATG 64 Query 131 CTCAAGGGATTCATAATGTGGCTGGTGAAAAAGATCACAGTGCTTACTCTTCGGAGGATT 190 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 65 CTCAAGGGATTCATAATGTAGCTGGTGAAAAAGATCACAGTGCTTACTCTTCTGAGGATT 124 Query 191 ACTTTGATGCTCATCTTACCCCTCTTGGTTGGCAACAGGTTGATAATCTAAGGAACCATG 250 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 125 ACTTTGATGCTCATCTTACCCCTCTTGGTTGGCAACAGGTTGATAATCTACGGAACCATG 184 Query 251 TTCGT-GCAGCTCAACTCTTAAACAAGGTTGAACTTGTCATTGTTTCCCCTATGCTTAGA 309 ||| | ||| ||||||||||||| ||||||||||||||||||||||| ||| |||||||| Sbjct 185 TTC-TAGCAACTCAACTCTTAAAGAAGGTTGAACTTGTCATTGTTTCACCTTTGCTTAGA 243 Query 310 ACTATACAAACAGCTGTTGGTGCTTTTGGAGGAGAAGAAGATACTAATGGAGCGGATGCA 369 |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| || Sbjct 244 ACTATACAAACAGCTGTTGGTGCTTTTGGAGGTGAAGAAGATACTCATGGAGCGGATACA 303 Query 370 ACACCGTTAATGGTGGCTAATGCTGGGAGCAGCGATCGTCCTGCGATTTCTAGCTTAAAT 429 |||||||| ||||||||||||||||||| ||| ||||| ||||||||||| ||||||||| Sbjct 304 ACACCGTTGATGGTGGCTAATGCTGGGAACAGTGATCGCCCTGCGATTTCAAGCTTAAAT 363 Query 430 AGTCCTCCTTTCCTTGCTGTTGAGCTTTGCAGGGAAACTATGGGTGATCATCCTTGTGAC 489 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 364 AGCCCGCCTTTCCTTGCTGTTGAGCTTTGCAGGGAAACTATGGGTGATCATCCTTGTGAC 423 Query 490 AGGCGAAGAAGCGTCACTGAGTACAAGGCTCTCTTTCCCGCTATTGATTTCTCAATTATT 549 |||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| Sbjct 424 AGGCGAAGAAGCGTCACTGAGTACAAGGCTCTTTTTCCCGCAATCGATTTCTCAATTATT 483 Query 550 GAAACCGACAATGATGTTCTGTGGAAGCCGAGTCCAAGAGAGAGCCTTGAAGAAGTTGCA 609 ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 484 GAAACCGACAAGGATGTTTTGTGGAAGCCGAGTCCAAGAGAGAGCCTTGAAGAAGTTGCA 543 Query 610 GCCAGAGGTGTAGAGTTCATCAAATGGATATGGACAAGGAAAGAGAAGGAGATCGCAATT 669 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 544 GCCAGAGGTGTAGAGTTCATCAAATGGATATGGACAAGGAAAGAGAAGGAGATCGCGATT 603 Query 670 GTATCTCACAGTGGCTTCTTGCACGGTCTCTTGAGTTCTTTCGGGAAGGATTGTTGCGAT 729 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 604 GTATCTCACAGCGGCTTCTTGCACGGTCTCTTGAGTTCTTTCGGGAAGGATTGTTGTGAT 663 Query 730 GACCTAAAGAAAGAGTTGTCTATACATTTGAGCAACTGTGAGCTTCGCTCAATGGTTATC 789 ||||||||||||||| ||||||| ||||| |||||||||||||| ||||||||||||||| Sbjct 664 GACCTAAAGAAAGAGCTGTCTATGCATTTCAGCAACTGTGAGCTGCGCTCAATGGTTATC 723 Query 790 GTGGATCGAGGGAACCTGGGGACTGACTCTGCAGAGACCACAAACTATCCTGGGAAGGTT 849 |||||| |||||||||||||||||| |||||||||||||||||||||||||| ||| || Sbjct 724 GTGGATAAAGGGAACCTGGGGACTGATTCTGCAGAGACCACAAACTATCCTGGAAAGCTT 783 Query 850 CCTGAAGGACTTGATAATCCTAGTGGCTAAATGGCTGAAGAGTAAGAGAGAGAAT 904 ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 784 CCTCAAGGACTTGATAATCCAAGTGGCTAAATGGCTGAAGAGTAAGAGAGAGAAT 838 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40334046186 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5