BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17280.1
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480613 jgi|Araly1|480613|fgenesh2_kg.3__3314__AT2G17280.1 1319 0.0
> Ahg480613 jgi|Araly1|480613|fgenesh2_kg.3__3314__AT2G17280.1
Length=950
Score = 1319 bits (714), Expect = 0.0
Identities = 795/835 (95%), Gaps = 2/835 (0%)
Strand=Plus/Plus
Query 71 ACGAAGGCATAGGTCTTTACCCGCTTCATCGTTGCAAAACCATTCACCTGGTGAGACATG 130
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 5 ACGAAAGCATAGGTCTTTACCCTCTTCATCGTTGCAAAACCATTCACCTGGTGAGACATG 64
Query 131 CTCAAGGGATTCATAATGTGGCTGGTGAAAAAGATCACAGTGCTTACTCTTCGGAGGATT 190
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 65 CTCAAGGGATTCATAATGTAGCTGGTGAAAAAGATCACAGTGCTTACTCTTCTGAGGATT 124
Query 191 ACTTTGATGCTCATCTTACCCCTCTTGGTTGGCAACAGGTTGATAATCTAAGGAACCATG 250
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 125 ACTTTGATGCTCATCTTACCCCTCTTGGTTGGCAACAGGTTGATAATCTACGGAACCATG 184
Query 251 TTCGT-GCAGCTCAACTCTTAAACAAGGTTGAACTTGTCATTGTTTCCCCTATGCTTAGA 309
||| | ||| ||||||||||||| ||||||||||||||||||||||| ||| ||||||||
Sbjct 185 TTC-TAGCAACTCAACTCTTAAAGAAGGTTGAACTTGTCATTGTTTCACCTTTGCTTAGA 243
Query 310 ACTATACAAACAGCTGTTGGTGCTTTTGGAGGAGAAGAAGATACTAATGGAGCGGATGCA 369
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||
Sbjct 244 ACTATACAAACAGCTGTTGGTGCTTTTGGAGGTGAAGAAGATACTCATGGAGCGGATACA 303
Query 370 ACACCGTTAATGGTGGCTAATGCTGGGAGCAGCGATCGTCCTGCGATTTCTAGCTTAAAT 429
|||||||| ||||||||||||||||||| ||| ||||| ||||||||||| |||||||||
Sbjct 304 ACACCGTTGATGGTGGCTAATGCTGGGAACAGTGATCGCCCTGCGATTTCAAGCTTAAAT 363
Query 430 AGTCCTCCTTTCCTTGCTGTTGAGCTTTGCAGGGAAACTATGGGTGATCATCCTTGTGAC 489
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 AGCCCGCCTTTCCTTGCTGTTGAGCTTTGCAGGGAAACTATGGGTGATCATCCTTGTGAC 423
Query 490 AGGCGAAGAAGCGTCACTGAGTACAAGGCTCTCTTTCCCGCTATTGATTTCTCAATTATT 549
|||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 424 AGGCGAAGAAGCGTCACTGAGTACAAGGCTCTTTTTCCCGCAATCGATTTCTCAATTATT 483
Query 550 GAAACCGACAATGATGTTCTGTGGAAGCCGAGTCCAAGAGAGAGCCTTGAAGAAGTTGCA 609
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 484 GAAACCGACAAGGATGTTTTGTGGAAGCCGAGTCCAAGAGAGAGCCTTGAAGAAGTTGCA 543
Query 610 GCCAGAGGTGTAGAGTTCATCAAATGGATATGGACAAGGAAAGAGAAGGAGATCGCAATT 669
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 544 GCCAGAGGTGTAGAGTTCATCAAATGGATATGGACAAGGAAAGAGAAGGAGATCGCGATT 603
Query 670 GTATCTCACAGTGGCTTCTTGCACGGTCTCTTGAGTTCTTTCGGGAAGGATTGTTGCGAT 729
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 604 GTATCTCACAGCGGCTTCTTGCACGGTCTCTTGAGTTCTTTCGGGAAGGATTGTTGTGAT 663
Query 730 GACCTAAAGAAAGAGTTGTCTATACATTTGAGCAACTGTGAGCTTCGCTCAATGGTTATC 789
||||||||||||||| ||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 664 GACCTAAAGAAAGAGCTGTCTATGCATTTCAGCAACTGTGAGCTGCGCTCAATGGTTATC 723
Query 790 GTGGATCGAGGGAACCTGGGGACTGACTCTGCAGAGACCACAAACTATCCTGGGAAGGTT 849
|||||| |||||||||||||||||| |||||||||||||||||||||||||| ||| ||
Sbjct 724 GTGGATAAAGGGAACCTGGGGACTGATTCTGCAGAGACCACAAACTATCCTGGAAAGCTT 783
Query 850 CCTGAAGGACTTGATAATCCTAGTGGCTAAATGGCTGAAGAGTAAGAGAGAGAAT 904
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 784 CCTCAAGGACTTGATAATCCAAGTGGCTAAATGGCTGAAGAGTAAGAGAGAGAAT 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40334046186
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5