BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G17300.1

Length=633
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg931582 jgi|Araly1|931582|scaffold_304039.1                        652    0.0  


> Ahg931582 jgi|Araly1|931582|scaffold_304039.1
Length=448

 Score =  652 bits (353),  Expect = 0.0
 Identities = 407/431 (94%), Gaps = 12/431 (3%)
 Strand=Plus/Plus

Query  144  CAAGCCATGAGCTCCTCAATTATGAAAACCCTTCAAATTCGTAAACCAACTTCTCTCCCT  203
            |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  15   CAAGCCATGAGCTCTTCAATTATGAAAACCCTTCAGATTCGTAAACCAACTTCTCTTCCT  74

Query  204  ATCTCTTCCACCACCACAGATGAGCCAGGGCTTCTCCGTCGTCGtctctcttctctttct  263
            ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  75   ATCTCCTCCACCACCATAGATGAGCCAGGGCTTCTCCGTCGTCGTCTCTCTTCTCTTTCT  134

Query  264  ctaaatctctcACGTAACCAACCTTCCACCGTCTCAAGATCCAAGTCTGTCTCTGACATG  323
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  135  CTAAATCTCTCACGTAACCAACCTTCCACCGTCTCAAGATCCAAGTCGGTCTCTGACATG  194

Query  324  GGAGAGCAAGGAGGGAGCTCCGTGAAAGAATGGTGGGAATGGAGTTGGTCATGGATTCTT  383
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  195  GGAGAGCAAGGAGGGAGCTCCGTGAAAGAATGGTGGGAATGGAGTTGGTCATGGGTTCTT  254

Query  384  TTAAAGAAGTTACCAATCTTTTTCACAGATCTTGAGGTTAACAAGAACGAAACCAAATCA  443
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  255  TTAAAGAAGTTACCAATCTTTTTCACAGATCTTGAGGTTAACAAGAACGAAACCAAATCA  314

Query  444  TCATTGGGGAATCAACAAAGAGGTAGCTTCATTCACGTCTTTTTTAAGCTCCGATCTGAA  503
            |||||||||||| |     |      ||||| ||||||||| ||||||||||||||||| 
Sbjct  315  TCATTGGGGAAT-A-----G------CTTCACTCACGTCTTCTTTAAGCTCCGATCTGAG  362

Query  504  ATCCGCCGTCTCCTCCGTCCTTCCTCAGACTCTCTTCCTCTCTCTTGCAAACATGGACAG  563
            |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  363  ATCCGCCGTCTCCTCCGTCCTTCCTCCGACTCTCTTCCTCTCTCTTGCAAACACGGACAG  422

Query  564  CGATGACGTGG  574
            |||||||||||
Sbjct  423  CGATGACGTGG  433



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23178733536


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5