BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17305.1
Length=1173
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480615 jgi|Araly1|480615|fgenesh2_kg.3__3316__AT2G17305.1 1487 0.0
> Ahg480615 jgi|Araly1|480615|fgenesh2_kg.3__3316__AT2G17305.1
Length=1094
Score = 1487 bits (805), Expect = 0.0
Identities = 937/999 (94%), Gaps = 16/999 (2%)
Strand=Plus/Plus
Query 1 ATGGTAGAACCTGATAGGGTTTTCTTTGTACGTGTTATGCGTGAGTGGATCTCAAGATTT 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGGTAGAACCTGATAGGGTTTTCTTTGTACGTGTTATGCGTGAGTGGGTCTCAAGATTT 60
Query 61 ACTGGTAAAATTATTGAAAATTTTGAGATTCATCTCTCCCAGCCGATGGGTTTCGCAGGA 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTGGTAAAGTTATTGAAAATTTTGAGATTCATCTCTCCCAGCCGATGGGTTTCGCAGGA 120
Query 121 GATATAATGTCTCTCACTGAATTTGCCACCTCCCGACAAGTCAAGAACTTAGTTCTTGAT 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 GATATAATGTCTCTCACTGAATTCGCCACCTCCCGACAAGTCAAGAACTTAGTTCTTGAT 180
Query 181 TTCTCAGATCCTATCCAAAGAAACTTAAGTCAAGCCCAACAGATTATAAGAGATGGTCTA 240
|||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 181 TTCTCAGATCCTGTCCAAAGAAACTTAAGTCAAGCCCAACAGACTATAAGAGATTGTCTA 240
Query 241 CTCAGATGCAGATACCCTCAAAAGAACGAATTAGATGTTTCTCATCTCTTTTTCAATCTT 300
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 CTCAGATGCAGATATCCTCAAAAGAACGATTTAGATGTTTCTCATCTCTTTTTCAATCTT 300
Query 301 TTATATGTTAGAAATTTAACGGTCTGCTCTTTTTTCCTTCAGGTCCTCCAAGATTGTGAC 360
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 TTATATGTTAGAACTTTAACGGTCTGCTCCTTTTTCCTTCAGGTCCTCCAAGATTGTGAC 360
Query 361 GATCCTATGGCTTTGCACGTTTCGATGAAAACTCGACATTTGGTGATGAAAACAAATATG 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GATCCTATGGCTTTGCACGATTCGATGAAAACTCGACATTTGGTGATGAAAACAAATATG 420
Query 421 CACGCAAATGACTTCGTGGGAATTAGCATATTTCTCAATAGTTGTCCGGAACTGGAATCA 480
|| ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 421 CATGCAAATGACTTCGTGGGAATTAGTATCTTTCTCAATAGTTGTCCGGAACTTGAATCT 480
Query 481 CTCACGTTTGATTTGGTTACTAGTAGTCGTTTCGTGAGAGCTCCATCGCCTTTAGTGATA 540
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 481 CTCACGTTTGATTTGGTTACTACTAGTCGTTTCGTGAGAGCTCGATCGCCTTTAGTGATA 540
Query 541 GATCCTGTAAGCCATTGGCTCACTAGCAAATCTTACGAGTGTTTGGAAAAAACGCTTAAG 600
||||| ||||| |||||||||||||| ||| |||||||||| |||||||||||||| |||
Sbjct 541 GATCCAGTAAGTCATTGGCTCACTAGTAAAGCTTACGAGTGCTTGGAAAAAACGCTAAAG 600
Query 601 GTTGTGAAGATAACA-AAATTTCGTGGAAGCTCGAACGAGTTACATATGCTTCAATACTT 659
||||||||| ||| | ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 601 GTTGTGAAGGTAA-AGAAATTCCGTGGAAGCTCGAACGAATTACATATGCTTCAATACTT 659
Query 660 GCTTCGTACCGGGTGTGTTATGGAACGAGTTGATCTATACGAGGCAGAGGGATTGAACCA 719
| |||||||||||||||| |||||||||||||| || ||||||||| | |||||||||||
Sbjct 660 GATTCGTACCGGGTGTGTGATGGAACGAGTTGACCTTTACGAGGCAAATGGATTGAACCA 719
Query 720 TAACCAAAAGAGGTGGGTACTAGCTGGGGTTGAGGAGGTTCAGCAGAATTTCAAGAGAGC 779
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 720 TAATCAAAAGAGGTGGGTACTAGCTGCGGTTGAGGAGGTTCAGCAGAATTTCAAGAGAGC 779
Query 780 TTCGAGGCATTTACGAATTACTCTACACAATGCTTGATTCAAGCAT-TT-T-------CT 830
|||||||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 780 TTCGAGGCATTTACGAATTACTCTACACAATGCTTGATTCAAGCATCTTCTAGATTTTCT 839
Query 831 AGTGAAAAAGTAA-TCAATGAATGATCTTTTTGAACTTTGCTTTATTTCATAT-GAAGGA 888
||||||||| ||| ||| ||||||||||||| || ||||||||||||||||| || ||
Sbjct 840 AGTGAAAAA-TAACTCATTGAATGATCTTTTCAAA-TTTGCTTTATTTCATATTGAGGG- 896
Query 889 TGCGTATGTTTTATTTGGATTGGTTGTTTCAGTTGTTTAAGTCTATTATTTTCCTATTTG 948
||||||||||| ||||||||| |||||||||||||||||||| |||| ||||||||||||
Sbjct 897 TGCGTATGTTTCATTTGGATTAGTTGTTTCAGTTGTTTAAGTTTATTCTTTTCCTATTTG 956
Query 949 GCTTGGTAAGATAAACAATTGATAATTAAGAAATGAAAA 987
|||| |||||| ||| |||||||||||||||||||||||
Sbjct 957 GCTTTGTAAGAAAAATAATTGATAATTAAGAAATGAAAA 995
Score = 100 bits (54), Expect = 2e-20
Identities = 61/64 (95%), Gaps = 2/64 (3%)
Strand=Plus/Plus
Query 1019 TTTGGTTT-GTTTTTAAAAATTTAAATCTATGTTTGAAAATCAATATTTACAATATGATA 1077
|||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 996 TTTGGTTTGGTTTTT-AAAATTTAAATATATGTTTGAAAATCAATATTTACAATATGATA 1054
Query 1078 TTAA 1081
||||
Sbjct 1055 TTAA 1058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43765108716
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5