BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17310.1
Length=1219
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480616 jgi|Araly1|480616|fgenesh2_kg.3__3317__AT2G17310.1 1598 0.0
Ahg925882 jgi|Araly1|925882|scaffold_201443.1 215 7e-55
Ahg315690 jgi|Araly1|315690|fgenesh1_pm.C_scaffold_2000723 198 7e-50
> Ahg480616 jgi|Araly1|480616|fgenesh2_kg.3__3317__AT2G17310.1
Length=1212
Score = 1598 bits (865), Expect = 0.0
Identities = 1038/1120 (93%), Gaps = 17/1120 (2%)
Strand=Plus/Plus
Query 25 CTTCCGTGGGAGTTGGAGGAAGACATACTCTCTCGTCTGCCACCT-ATATCTCTTGTTCG 83
||||| |||||||||||||||||||||||||||||||| |||||| | |||||| |||||
Sbjct 32 CTTCCATGGGAGTTGGAGGAAGACATACTCTCTCGTCTTCCACCTCA-ATCTCTCGTTCG 90
Query 84 ATTCAGAACCGTGTCTAAACACTGGAACTCTCTTTTCAACGACAAGACTTTCATCAACAA 143
|||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 91 ATTCAGAACCGTCTCTAAACAATGGAACACTCTTTTCAACGACAAGACTTTCATCAACAA 150
Query 144 TCACTTGTCTCGCTCCCGTCCCGAATTCATTATCTTGACCAA-TTCCAAGATTTATTCGG 202
||| |||||||||||||||||| | ||||| || ||| ||| |||||||||||||||
Sbjct 151 TCATTTGTCTCGCTCCCGTCCCCAGTTCATCCTCCTGA-CAACTTCCAAGATTTATTCCA 209
Query 203 TAGACATCATCGATCACAACAACATCGATCCAACGATAAGGTTGCATGAGATACCCACCT 262
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 210 TAGACATCATCGATCACATCAACATCGATCCAACGATAAGGTTGCATGAGATACCCACCT 269
Query 263 ATGATATTCATAGCCGGGGTACAGATTTGAATCGCACAATTATAAATACTTGCGATGAGT 322
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 270 ATGATATTCGTAGCCGGGGTACAGATTTGAATCGCACAATTATACGTACTTGCGATGAGT 329
Query 323 TCTTGTTTTATAACTATCGGTATTGGGACAACATGACAGCTCTCTGGAATCCATGGTTGA 382
|||||||||||||||||||| ||||||| |||| |||||||||||||| |||||||||||
Sbjct 330 TCTTGTTTTATAACTATCGGCATTGGGATAACAAGACAGCTCTCTGGAGTCCATGGTTGA 389
Query 383 GACAGGTTAGATGGATCGAGTACGCGAATCAAGAGTTCTGTGTTTTCGGCTTAGGGTACG 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 GACAGGTTAGATGGATCGAGTACGCGAATCAAGAGTTCTGTGTTTTCGGCTTAGGGTACG 449
Query 443 ATAATAGTAGACCCGAAAAGGTTTACAAGATCTTGGGCCATTTGTTTTGTCACGGTAAAG 502
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 450 ATAATAGTAGACCCGAAAAGGTATACAAGATCTTGGGCCATATGTTTTGTCACGGTAAAG 509
Query 503 TCTTGAGAGATCAGAAAGTTGTGATCTACGAGTGTGCGTCTGACTCGTTGAGGTTTATTG 562
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 510 TCTTGAGAGATCAGAAAGTTGCGATCTACGAGTGTGCGGCTGACTCGTTGAGGTTTATTG 569
Query 563 ATAGACCTGAGGATGACGACTGGCCCATAACTGAAACAGCTAAACGATCAAATGTGTCAT 622
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 570 ATAGACCTGAGGATGACGACTGGCCCATAACTGAAGCAGCTAAACGATCAAATGTGTCCT 629
Query 623 TAAATGGAAATCTCTATTGGTTTGGTTGTAGTAATTATGAGAATGATGAGTACTACATCC 682
| ||||||||| | |||||| ||| ||||||||||||| ||| | |||| ||||||||||
Sbjct 630 TGAATGGAAATATGTATTGGCTTGCTTGTAGTAATTATAAGACTCATGACTACTACATCC 689
Query 683 GAATCTTTGATTTCTCGACGGAGGATTTCAAACCTTTTTGTCTCCTTCCGTGTCAAATGA 742
||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||| ||
Sbjct 690 GAATCTTTGATTTCTCGACGGAGAATTTCAAACCTTTCTGTCTCCTTCCGTGTAAAAAGA 749
Query 743 GCCATAGTACTGATGAACTTGTCCTCGCGGTTTATAAGGGAGATCGGTTTTCGTTGTTAA 802
|||| ||| ||||| |||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 750 ACCATGGTATTGATGGACTTATCCTCGCGGTTTATAAGGAAGATCGGTTTTCGTTGTTAA 809
Query 803 AGCAATGCAGTGTAACAAGGGAGATTGGGGTATGGGTAACGAAAGAGAGGATTAGTAATG 862
|||||||||||||||| |||||||||||| |||||||||| || |||||||||||||||
Sbjct 810 AGCAATGCAGTGTAACGAGGGAGATTGGGATATGGGTAACCAAGGAGAGGATTAGTAAT- 868
Query 863 A-CAATGGGAACGGTGGAGAGGGCGTGGAGTGGTTAAAGTTGATGACCTTGTCAA-AACC 920
| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||
Sbjct 869 ATCAATGGGAACGGTGGGGAGGGCGTGGAGTGGATAAAGTTGATGACCTTGTCAACAAC- 927
Query 921 TAACTTGCCAAAGTTATTTGGTACGG-TTA--------GTTACTTCATCTATGGGAAGAC 971
||||||||| ||| ||||||||| | ||| ||||||||||||||| ||||||
Sbjct 928 TAACTTGCCTAAGCTATTTGGTAAGTCTTATCCCAATAGTTACTTCATCTATGAGAAGAC 987
Query 972 CTTATACATGTGTAATGGCGACGATGAAACTGCATTGGCTTGCATCTATATTGTGAGGGA 1031
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 988 ATTATACATGTGTGATGGCGACGAAGAAACTGCATTGGCTTGCATCTATATTGTGAGGGA 1047
Query 1032 AGATGTGTGCAAGAAGTTTCAAATAGGTTCTGGAAATATTAACTGTCGTCACTGTGTTTA 1091
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 AGATCTGTGCAAGAAGATTCAAATAGGTTCTGGAAATATTAACTGTCGTCACTGTGTTTA 1107
Query 1092 TACACCCAATTTGCTCTCGCTTCCTTTATTTATAGGTTAG 1131
||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1108 TACTCCCAATTTGCTCTCGCTTCCTTTATTTATTGGTTAG 1147
Score = 93.5 bits (50), Expect = 3e-18
Identities = 61/66 (92%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 1155 CTCTTTTCGTCTCCTTAAGCATTTTCTTC-TTCATTTACTCGCCTATGGACTATAATGTA 1213
||||||||||||||||||||||||||||| || |||||||||||||||||| | |||||
Sbjct 1148 CTCTTTTCGTCTCCTTAAGCATTTTCTTCATTG-TTTACTCGCCTATGGACTTTTATGTA 1206
Query 1214 ATATCG 1219
||||||
Sbjct 1207 ATATCG 1212
> Ahg925882 jgi|Araly1|925882|scaffold_201443.1
Length=859
Score = 215 bits (116), Expect = 7e-55
Identities = 584/794 (74%), Gaps = 95/794 (12%)
Strand=Plus/Plus
Query 367 TGGAATCCATGGTTGAGACAGGTTAGATGGATCGAGTACGCGAATCAAGAGTTCT-GTGT 425
|||||||| ||||||||||||||| ||||||||||||||| | || ||| ||| | | |
Sbjct 99 TGGAATCCGTGGTTGAGACAGGTTGGATGGATCGAGTACGAGGATAAAG-GTTTTCAT-T 156
Query 426 TTT-CGGCT-TAGGGTACGATAATAGTAGACCCGAAAAG-GTTTACAAGATCTTGGGCCA 482
||| ||| | |||| ||||||| | ||| |||||||||| | ||||||||||||||| |
Sbjct 157 TTTGCGG-TGTAGGATACGATAGTTGTAAACCCGAAAAGAG-TTACAAGATCTTGGGGTA 214
Query 483 TTTGT-TTTGTCACGGTAAAGT--------CTT--GA-G--AGAT-CAG-AAAGTTGTGA 526
||| | ||||| | ||||||| ||| | | || | | | | ||||| ||
Sbjct 215 TTT-TAATTGTCTCCGTAAAGTCAGCGACACTTACCATGTAAGTTACCGCAGAGTTGCGA 273
Query 527 TCTACGAGTGTGCGTCTGACT-CGTTGAGGTTTATTGATAGACCTGAGGATGACG-ACTG 584
| ||||||||| ||||| | | |||||| ||| |||||| | || | ||| | ||
Sbjct 274 TTTACGAGTGTTCGTCTCA-TGCGTTGAAGTTCATTGAT-G-CC--CCTTTCACGCAGTG 328
Query 585 GCCCATAACTGAAACAGCTAAACGATCAAATGTGTCATTAAATGGAAATCTCTATTGGTT 644
|||||| | || || || | | |||| || || || |||||||||||| |
Sbjct 329 GCCCATCA-TG-----GC---AC---C---TTTGTCCTTGAACGGGAATCTCTATTGGCT 373
Query 645 TGGTTGTAGTAATTATGAGAATGATGAGTACTACATCCGAATCTTTGATTTCTCGACGGA 704
| | | | || ||||| | || |||| | |||||||| |||||||||||| | |||
Sbjct 374 TACTCAT-G-AA-CCTGAGACTTATAAGTATTTCATCCGAAGCTTTGATTTCTCCAAGGA 430
Query 705 GGAT-TTCAAACCTTTTTGTCTCCTTCCGTGTC-AAATGAGCCATAGTAC-TGATGAACT 761
||| |||||||||||||||||||| || |||| ||| || || | | | ||||||||
Sbjct 431 -GATATTCAAACCTTTTTGTCTCCTGCCCTGTCTAAA-GAACCGTTCT-CGAGATGAACT 487
Query 762 TGTCCTCGCGGTTTATAAGGGAGATCGGTTTTCGTTGTTAAAGCAATGCAGTGTAACAAG 821
|||||||||||||| ||| |||||||||||||||||||||||||||| | ||||||| |
Sbjct 488 TGTCCTCGCGGTTTTTAAAAGAGATCGGTTTTCGTTGTTAAAGCAATGTAATGTAACA-G 546
Query 822 GGA-GATTGGGGTATGGGTAACGAAAGAGAGGATTAGTAATGACAATGGGAACGGTGGAG 880
||| ||||| | ||||||||||| || || | || | ||| ||| | | |||
Sbjct 547 GGAAGATTGATATTTGGGTAACGAA-GA-AG-A--AG-ATTGA---TGG-A--GA-GGA- 592
Query 881 AGGGCGTGGAGTGGTTAAAGTTGATGACCTTGTCAA-AACCTAACTTGCCAAAGTTA-TT 938
|| ||| ||| |||| |||||||| ||| ||| ||| ||||||| | ||||| ||
Sbjct 593 AGTA-GTG---TGGATAAACTTGATGACTTTGCCAACAAC-TAACTTGTCTAAGTTGGTT 647
Query 939 --TG-GTAC-G-G---TTAGTTACTTCATCTATGGGAAGACCTTA-TACATGTGTAATGG 989
| || | | |||||||||||||||||| |||||| || | ||||||| |||
Sbjct 648 AATAAGTTTTGTGGCATTAGTTACTTCATCTATGACAAGACCCTAAT-CATGTGTTGTGG 706
Query 990 CGACGATGAAACTGCATTGGCTTGCATCTATATTGTGA-GGGAAGATGTGTGCAAGAAGT 1048
|||| | |||||| | |||||||||||| |||||| |||| ||| | | |||||||
Sbjct 707 CGACCACCAAACTGGAGCCGCTTGCATCTATTTTGTGAAGGGA-GATATATTCAAGAAGA 765
Query 1049 TTCAAATAGGTTCTGGAAATATTAACTGT-CGTCACTGTGTTTATACACCCAA-TTTGCT 1106
||||||||| ||| || | | || | | | ||||||||| ||| | |||| |||| |
Sbjct 766 TTCAAATAGATTCCGGTAGTGTTCGGTTTTC-TCACTGTGTCTAT-CTTCCAAATTTGTT 823
Query 1107 CTCGCTTCCTTTAT 1120
||| |||||||||
Sbjct 824 ATCGGTTCCTTTAT 837
> Ahg315690 jgi|Araly1|315690|fgenesh1_pm.C_scaffold_2000723
Length=1062
Score = 198 bits (107), Expect = 7e-50
Identities = 396/526 (75%), Gaps = 58/526 (11%)
Strand=Plus/Plus
Query 617 TGTCATTAAATGGAAATCTCTATTGGTTTGGTTGTAGTAATTATGAGAATGATGAGTACT 676
|||| || ||||| |||||||||||| || | | |||| ||||| | ||||| | |
Sbjct 548 TGTCCTTGAATGGGAATCTCTATTGGCTT-ACT-CA-TAATCCTGAGACTCATGAGCATT 604
Query 677 ACATCCGAATCTTTGATTTCTCGACG-GAGGAT-TTCAAACCTTTTTGTCTCCTTCCGTG 734
|||||||| |||||||||||||| | || || |||||||| ||||||||||| |||||
Sbjct 605 TCATCCGAAGCTTTGATTTCTCGA-GTGA-AATATTCAAACCCTTTTGTCTCCTACCGTG 662
Query 735 TCA-AATGAGCCATAGTACTGATGA-ACTTGTCCTCGCGGTTTATAAGGGAGATCGGTTT 792
||| || || || | | | ||| | |||| |||||||||||||||| ||||||||||||
Sbjct 663 TCAGAA-GAACCGTTCTTCGGAT-AGACTTATCCTCGCGGTTTATAAAGGAGATCGGTTT 720
Query 793 TCGTTGTTAAAGCAATGC-AGTGTAACAAGGGA-GATTGGGGTATGGGTAACGAAAGAGA 850
||||||||||||||||| | ||||||| | || ||||| | ||||||||||| || |
Sbjct 721 TCGTTGTTAAAGCAATGTTA-TGTAACA-GAGACGATTGATATTTGGGTAACGAA-GA-A 776
Query 851 GGATTAGTAATGACAATGGGAACGGTGGAGAGGGCGTGGAGTGGTTAAAGTTGATGACCT 910
| || | | ||| ||| | | ||| || | ||| ||| |||| |||||||| |
Sbjct 777 GAAT-A-T--TGA---TGG-A--GA-GGA-AGTG-GTG---TGGATAAACTTGATGACTT 820
Query 911 TGTC-AA-AACCTAACTTGCCAAAGTTA-TT--TG-G-TACG-G---TTAGTTACTTCAT 959
| || || ||| ||||||||| |||||| || | | | | | |||||||||||||
Sbjct 821 T-TCCAAGAAC-TAACTTGCCTAAGTTAGTTAATAAGATTTGTGGCATTAGTTACTTCAT 878
Query 960 CTATGGGAAGACCTTA-TACATGTGTAATGGCGACGATGAAACT-GCATTGGCTTGCATC 1017
|| || |||||| || | ||||||| |||||||| | || || | | ||||||||||
Sbjct 879 CTTTGACAAGACCCTAAT-CATGTGTTGTGGCGACGGTCAA-CTTGGAGCGGCTTGCATC 936
Query 1018 TATAT-TGTGAGGGAAGATGTGTGCAAGAAGTTTCAAATAGGTTCT-GGAAATATTAACT 1075
|| || | |||||| |||| ||| || |||| |||| |||| || | || | |||| |
Sbjct 937 TACATAT-TGAGGGGAGATATGTTCAGGAAGATTCATATAGATT-TAGGGATTATTCGGT 994
Query 1076 GT-CGTCACTGTGTTTATACACCCAA-TTTGCTCTCGCTTCCTTTA 1119
| | |||||||| |||| | |||| |||| ||||| ||||||||
Sbjct 995 TTTC-TCACTGTGCTTAT-CTTCCAAATTTGATCTCGGTTCCTTTA 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45518762898
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5