BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17320.1
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931587 jgi|Araly1|931587|scaffold_304044.1 1764 0.0
Ahg480618 jgi|Araly1|480618|fgenesh2_kg.3__3319__AT2G17340.1 1524 0.0
Ahg491111 jgi|Araly1|491111|fgenesh2_kg.7__544__AT4G35360.1 1155 0.0
> Ahg931587 jgi|Araly1|931587|scaffold_304044.1
Length=1126
Score = 1764 bits (955), Expect = 0.0
Identities = 1069/1125 (95%), Gaps = 3/1125 (0%)
Strand=Plus/Plus
Query 47 TCGTCGTTATCAATTCGGAGATGATTCCGTTTCCTCTGTTACCAACGCCGATTGAAACCA 106
||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 TCGTCGTTAACAATTTGGAGATGATTCCGTTTCCTCTGTTACCGACGCCGATTGAAACCA 60
Query 107 ACTACAGAGCTTGCACCATTCCTTATAGATTCCCTTCCGATAATCTCAAGAAAGCCACTC 166
|||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 61 ACTACAGAGCCTGCACCATTCCTTATAGATTCCCTTGTGATAATCTGAAGAAAGCCACTC 120
Query 167 CTACTGAAATCTCCTGGATCAACGTCTTCGCCAATTCCATTCCTTCTTTCAAGAAACGTG 226
||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||| |
Sbjct 121 CTACTGAAATCTCGTGGATCAACGTCTTCGCTAATTCCATCCCTTCGTTCAAGAAACGAG 180
Query 227 CAGAGAGCGATACCAGTGTTCCAGATGCTCCTGCTAGAGCTAAAATTTTTGAACAAAGAT 286
|||||||||||| || |||||||||||||||||| ||||||||||| |||| | ||||||
Sbjct 181 CAGAGAGCGATATCACTGTTCCAGATGCTCCTGCGAGAGCTAAAATATTTGCAGAAAGAT 240
Query 287 ATGCGGGATTTCTTGAAGGCTGGAAGAAAGATCCAGAGAGTAATGGTGGGCCACCAGATG 346
|||||||| ||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 241 ATGCGGGAATTCTTGAAGATTGGAAGAAAGATCCAGAGAGCAATGGCGGGCCACCAGATG 300
Query 347 GTGTTATTCTCGGCCGAGTTCGTGAGCATTTACTCAGAGAGTTAGGATTTAGGGACATAT 406
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 GCATTATTCTCGGCCGAGTTCGTGAGCATTTACTCAGAGAGTTAGGATTTAAGGACATAT 360
Query 407 TCAAGAAAGTCAAGGATGAGGAGAATGCAAAGGCTATATCACTATTTCCTGAAGTTGTCA 466
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCAAGAAAGTCAAGGATGAAGAGAATGCAAAGGCTATATCACTATTTCCTGAAGTTGTCA 420
Query 467 GTCTGAGTGATGCTATTGAAGATGACGGAGAACGGTTAGAGAATTTGGTGAGAGGGATAT 526
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 GTCTGAGTGATGCTATTGAAGATGACGGAAAACGGTTAGAGAATTTGGTGAGAGGGATAT 480
Query 527 TTGCTGGAAACATCTTTGATCTTGGTTCTGCACAGCTTGCTGAGGTTTTCTCAAGGGATG 586
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 481 TTGCTGGAAACATCTTTGATCTAGGTTCTGCACAGCTTGCTGAGGTTTTCTCAAGGGATG 540
Query 587 GCATATCTTTCTTGGCTACCTCTCAAAACTTGGTTCCACGACCATGGGTCATCGATGACT 646
||||||||||||||||||||| |||||||||||| |||||||| |||||||| |||||||
Sbjct 541 GCATATCTTTCTTGGCTACCTGTCAAAACTTGGTACCACGACCTTGGGTCATTGATGACT 600
Query 647 TGAACAAGTTCCAAGCCAAATGGGTCAAGAAGCCTTGGAAGAAGGCAGTGATTTTTGTTG 706
|| |||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 601 TGGACAACTTCCAAGCCAAATGGATCAAGAAGCCTTGGAAGAAGGCAGTGATATTTGTTG 660
Query 707 ATAATTCTGGTGCAGACATAATTTTGGGTATTTTGCC-TTTCGCAAGAGAGTTGCTCCGT 765
||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||
Sbjct 661 ATAATTCTGGTGCAGACATAATTTTGGGTATTTTGCCGTTT-GCAAGAGAGCTGCTCCGT 719
Query 766 CGAGGAATTCAGGTGGTGCTAGCTGCTAACGAGCTGCCAGCTATCAACGATGTAACATAT 825
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 720 CGAGGAACTCAGGTGGTGCTGGCTGCTAACGAGCTGCCAGCTATCAACGATGTAACATAT 779
Query 826 ACTGAGCTTACAGATATCGTGTCGCAGTTAAAGGATGGAAATGGCCAATTGATAGGCGTT 885
|| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 780 ACCGAGCTTACAGATATTGTGTCGCAGTTGAAGGATGGAAATGGCCAATTGATAGGTGTT 839
Query 886 GATACTTCAAAGCTTCTGATTGCAAATTCAGGGAACGATTTAGCGGTTATTGATCTCTCA 945
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 840 GATACTTCAAAGCTTCTGATTGCAAATTCAGGGAATGATTTAGCGGTTATCGATCTCTCA 899
Query 946 AGAGTATCGCACGAGCTTGCTTACCTTTCATCTGATGCAGACTTAGTCATCCTAGAAGGC 1005
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGAGTATCACATGAGCTTGCTTACCTTTCATCTGATGCAGACTTAGTCATCCTAGAAGGC 959
Query 1006 ATGGGTCGCGGGATCGAGACAAACCTTTATGCTCAGTTCAAGTGTGATTCTCTCAAGATC 1065
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ATGGGTCGTGGGATCGAGACAAACCTTTATGCTCAGTTCAAGTGTGATTCTCTCAAGATC 1019
Query 1066 GGAATGGTGAAGCACGTTGAAGTAGCACAGTTTCTCGGAGGACGACTTTACGACTGTGTC 1125
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GGAATGGTGAAGCATGTTGAAGTAGCACAGTTTCTCGGAGGACGACTTTACGACTGTGTC 1079
Query 1126 TTTAAATTCAATGAAGTTCAGAGTTAATTACATTTCAATGATATT 1170
||||||| |||||||||||||||||||| |||||||| | |||||
Sbjct 1080 TTTAAATACAATGAAGTTCAGAGTTAAT-ACATTTCAGTAATATT 1123
> Ahg480618 jgi|Araly1|480618|fgenesh2_kg.3__3319__AT2G17340.1
Length=1268
Score = 1524 bits (825), Expect = 0.0
Identities = 1017/1110 (92%), Gaps = 12/1110 (1%)
Strand=Plus/Plus
Query 59 ATTCGGAGATGATTCCGTTTCCTCTGTTACCAACGCCGATTGAAACCAACTACAGAGCTT 118
|||| |||||| |||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 42 ATTCAGAGATGGTTCCGTTTCCTCAATTACCGACGCCGATAGAAACCAACTACAGAGCTT 101
Query 119 GCACCATTCCTTATAGATTCCCTTCCGATAATCTCAAGAAAGCCACTCCTACTGAAATCT 178
||||||||||||| ||||||||||| ||| ||| ||||||||| ||||||||||||||||
Sbjct 102 GCACCATTCCTTACAGATTCCCTTCTGATGATCCCAAGAAAGCTACTCCTACTGAAATCT 161
Query 179 CCTGGATCAACGTCTTCGCCAATTCCATTCCTTCTTTCAAGAAACGTGCAGAGAGCGATA 238
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 CGTGGATCAACGTCTTCGCCAATTCCATTCCTTCTTTCAAGAAACGTGCAGAGAGCGATA 221
Query 239 CCA-GTGTTCCAGATGCTCCTGCTAGAGCT-AAAATTTTTGAACAAAGATATGCGGGATT 296
| | | |||||||||||||||||||||||| |||| ||||| | |||||||||||||| |
Sbjct 222 CAACG-GTTCCAGATGCTCCTGCTAGAGCTGAAAA-TTTTGCAGAAAGATATGCGGGAAT 279
Query 297 TCTTGAAGGCTGGAAGAAAGATCCAGAGAGTAATGGTGGGCCACCAGATGGTGTTATTCT 356
|||||||| || ||||||||||||||||||| |||| ||||||||||||||| || ||||
Sbjct 280 TCTTGAAGACTTGAAGAAAGATCCAGAGAGTCATGGCGGGCCACCAGATGGTATTCTTCT 339
Query 357 CGGCCGAGTTCGTGAGCATTTACTCAGAGAGTTAGGATTTAGGGACATATTCAAGAAAGT 416
||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 340 ATGCCGACTTCGTGAGCAAGTACTCAGAGAATTAGGATTTAGGGACATATTCAAGAAAGT 399
Query 417 CAAGGATGAGGAGAATGCAAAGGCTATATCACTATTTCCTGAAGTTGTCAGTCTGAGTGA 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 GAAGGATGAGGAGAATGCAAAGGCTATATCACTATTTCCTGAAGTTGTCAGTCTGAGTGA 459
Query 477 TGCTATTGAAGATGACGGAGAACGGTTAGAGAATTTGGTGAGAGGGATATTTGCTGGAAA 536
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 460 TGCTATTGAAGATGACGGAAAACGGTTAGAGAATTTGGTGAGAGGGATATTTGCTGGAAA 519
Query 537 CATCTTTGATCTTGGTTCTGCACAGCTTGCTGAGGTTTTCTCAAGGGATGGCATATCTTT 596
|||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 520 CATCTTTGATCTGGGTTCTGCACAGCTTGCTGAAGTTTTCTCAAGGGATGGTATGTCTTT 579
Query 597 CTTGGCTACCTCTCAAAACTTGGTTCCACGACCATGGGTCATCGATGACTTG-AACAAGT 655
|||||||| || |||||| ||||||||||||||||||||||| ||||||||| || || |
Sbjct 580 CTTGGCTAGCTGTCAAAATTTGGTTCCACGACCATGGGTCATTGATGACTTGGAA-AACT 638
Query 656 TCCAAGCCAAATGGGTCAAGAAGCCTTGGAAGAAGGCAGTGATTTTTGTTGATAATTCTG 715
|||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 639 TCCAAGCCAAATGGATCAACAAGTCTTGGAAGAAGGCAGTGATTTTTGTTGATAATTCTG 698
Query 716 GTGCAGACATAATTTTGGGTATTTTGCC-TTTCGCAAGAGAGTTGCTCCGTCGAGGAATT 774
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
Sbjct 699 GTGCAGACATAATTTTGGGTATTTTGCCGTTT-GCAAGAGAGTTGCTCCGTCGAGGAACT 757
Query 775 CAGGTGGTGCTAGCTGCTAACGAGCTGCCAGCTATCAACGATGTAACATATACTGAGCTT 834
||||| ||||| |||||||| || |||||| ||||||| || |||||||||| ||||||
Sbjct 758 CAGGTTGTGCTGGCTGCTAATGAACTGCCATCTATCAATGACATAACATATACCGAGCTT 817
Query 835 ACAGATATCGTGTCGCAGTTAAAGGATGGAAATGGCCAATTGATAGGCGTTGATACTTCA 894
||||| ||| || | ||||| ||||||| ||||||||||||| ||||||||||||||||
Sbjct 818 ACAGAGATCTTGACACAGTTGAAGGATGAAAATGGCCAATTGCTAGGCGTTGATACTTCG 877
Query 895 AAGCTTCTGATTGCAAATTCAGGGAACGATTTAGCGGTTATTGATCTCTCAAGAGTATCG 954
|||||||||||||||||||| ||||| || ||| | ||||| |||||||||||||||||
Sbjct 878 AAGCTTCTGATTGCAAATTCGGGGAATGACTTACCAGTTATCGATCTCTCAAGAGTATCA 937
Query 955 CACGAGCTTGCTTACCTTTCATCTGATGCAGACTTAGTCATCCTAGAAGGCATGGGTCGC 1014
|| ||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 938 CAGGAGCTTGCTTATCTTTCATCTGATGCCGACTTAGTCATCGTAGAAGGCATGGGTCGT 997
Query 1015 GGGATCGAGACAAACCTTTATGCTCAGTTCAAGTGTGATTCTCTCAAGATCGGAATGGTG 1074
|| || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 998 GGAATTGAGACAAACCTTTATGCTCAGTTCAAGTGTGATTCTCTGAAGATTGGAATGGTG 1057
Query 1075 AAGCA-CGTTGAAGTAGCACAGTTTCTCGGAGGACGACTTTACGACTGTGTCTTT-AAAT 1132
||||| | ||||||||||| |||||||||||||||||||||| |||||||| ||| ||||
Sbjct 1058 AAGCATC-TTGAAGTAGCAGAGTTTCTCGGAGGACGACTTTATGACTGTGT-TTTCAAAT 1115
Query 1133 TCAATGAAGTTCAGAGTTAATTACATTTCA 1162
||||||||||||||| |||||| ||||||
Sbjct 1116 ACAATGAAGTTCAGAGCTAATTATATTTCA 1145
> Ahg491111 jgi|Araly1|491111|fgenesh2_kg.7__544__AT4G35360.1
Length=1309
Score = 1155 bits (625), Expect = 0.0
Identities = 974/1141 (85%), Gaps = 29/1141 (3%)
Strand=Plus/Plus
Query 64 GAGATGATTCCGTTTCCTCTGTTACCAACGCCGATTGAAACCAACTACAGAGCTTGCACC 123
|||||| || |||| ||||||||||| |||||||| ||| | |||||||| |||||||||
Sbjct 35 GAGATGGTTGCGTTGCCTCTGTTACCGACGCCGATAGAATCAAACTACAGGGCTTGCACC 94
Query 124 ATTCCTTATAGATTCCCTTCCGATAATCTCAAGAAA-GCCACTCCTACTGAAATCTCCTG 182
||||||||| |||||||||| ||||||| | ||||| || ||||||||||| ||||| ||
Sbjct 95 ATTCCTTATCGATTCCCTTCTGATAATC-CTAGAAAGGCTACTCCTACTGAGATCTCTTG 153
Query 183 GATC-AACGTCTTCGCCAATTCCATTCCTTCTTTCAAGAAACGTGCAGAGAGCGATACCA 241
|||| | | ||||| |||||||||| |||||||||||| ||||||||||||| || || |
Sbjct 154 GATCGATC-TCTTCTCCAATTCCATCCCTTCTTTCAAGGAACGTGCAGAGAGTGACACAA 212
Query 242 GTGTTCCAGATGCTCCTGCTAGAGCT-AAAATTTTTGAAC-AAAGATATGCGG-GATTTC 298
|||||||||||||||| | ||||| |||| |||| | |||| ||||||| || |||
Sbjct 213 CCGTTCCAGATGCTCCTGTTCGAGCTGAAAA-ATTTG-CCAAAAGGTATGCGGAGA-TTC 269
Query 299 TTGAAGG-CTGGAAGAAAGATCCAGAGAGTAATGGTGGGCCACCAGATGGTGTTATTCTC 357
||| ||| || |||||||||||| ||||| ||||||| ||||||||| | || |||||
Sbjct 270 TTG-AGGACTTGAAGAAAGATCCGGAGAGCCATGGTGGTCCACCAGATTGCATTCTTCTC 328
Query 358 GGCCGAGTTCGTGAGCAT-TTACTCAGAGAGTTAGGATTTAGGGACATATTCAAGAAAGT 416
|| || | ||||||| | |||| ||||| || ||||||||||||||||||||||||||
Sbjct 329 TGCAGAATCCGTGAGC-TAATACTAAGAGAATTGGGATTTAGGGACATATTCAAGAAAGT 387
Query 417 CAAGGATGAGGAGAATGCAAAGGCTATATCACTATTTCCTGAAGTTGTCAGTCTGAGTGA 476
||||| || ||||||||||||||||||||||||||||| ||||||||| || |||||||
Sbjct 388 TAAGGACGACGAGAATGCAAAGGCTATATCACTATTTCCAGAAGTTGTCCGTTTGAGTGA 447
Query 477 TGCTATTGAAGATGACGGAGAA-CGGTTAGAGAATTTGGTGAGAGGGATATTTGCTGGAA 535
||||||||| ||||| || || || |||||||| |||| |||||||||||||||||||
Sbjct 448 TGCTATTGACGATGAAGG-CAAGCGCATAGAGAATCTGGTCAGAGGGATATTTGCTGGAA 506
Query 536 ACATCTTTGATCTTGGTTCTGCACAGCTTGCTGAGGTTTTCTCAAGGGATGGCATAT-CT 594
||||||||||||| ||||||||||||||||||||||||||||||| || ||||| | ||
Sbjct 507 ACATCTTTGATCTGGGTTCTGCACAGCTTGCTGAGGTTTTCTCAAAAGACGGCATGTCCT 566
Query 595 TTCTTGGCTACCTCTCAAAACTTGGTTCCACGACCATGGGTCATCGATGACTTGAACAAG 654
|| ||||||| || ||| ||||||||| |||||||||||||||| ||||||||| | ||
Sbjct 567 TT-TTGGCTAGCTGTCAGAACTTGGTTTCACGACCATGGGTCATTGATGACTTGGATAAC 625
Query 655 TTCCAAGCCAAATGGGTCAAGAAGCCTTGGAAGAAGGCAGTGATTTTTGTTGATAATTCT 714
|| ||||| | ||||||||| ||||||||||||||||| ||||| ||||| |||||||||
Sbjct 626 TTTCAAGCTAGATGGGTCAAAAAGCCTTGGAAGAAGGCTGTGATATTTGTCGATAATTCT 685
Query 715 GGTGCAGACATAATTTTGGGTATTTTG-CCTTTCGCAAGAGAGTTGCTCCGTCGAGGAAT 773
||||||||||||||||||||||| ||| ||||| | ||||| |||| |||||||||||
Sbjct 686 GGTGCAGACATAATTTTGGGTATCTTGCCCTTT-GTTAGAGAAATGCTACGTCGAGGAAT 744
Query 774 TCAGGTGGTGCTAGCTGCTAACGAGCTGCCAGCTATCAACGATGTAACATATACT-GAGC 832
||||| ||||| |||||||| ||||| ||| |||||||||||||||| |||| | ||||
Sbjct 745 GCAGGTTGTGCTGGCTGCTAATGAGCTTCCATCTATCAACGATGTAACTTATA-TCGAGC 803
Query 833 TTACAGATATCGTGTCGCAGTTAAAGGATGGAAATGGCCAATTGATAGGCGTTGATACTT 892
|| |||| ||| |||| || | ||||||| ||| || |||||||| || |||||||| |
Sbjct 804 TTGCAGAGATCTTGTCTAAGCTGAAGGATGAAAAAGGACAATTGATGGGTGTTGATACCT 863
Query 893 CAAAGCTTCTGATTGCAAATTCAGGGAACGATTTAGCGGTTATTGATCTCT-CAAGAGTA 951
| || ||||| |||||||||||||||||||| ||| ||||||||||||| | ||||||||
Sbjct 864 CGAATCTTCTTATTGCAAATTCAGGGAACGACTTACCGGTTATTGATCT-TGCAAGAGTA 922
Query 952 TCGCACGAGCTTGCTTACCTTTCATCTGATGCAGACTTAGTCATCCTAGAAGGCATGGGT 1011
|| || ||| |||| ||||| ||| | ||||||||||| |||||| |||||||||||||
Sbjct 923 TCACAGGAGGTTGCGTACCTCTCAACCGATGCAGACTTGGTCATCTTAGAAGGCATGGGC 982
Query 1012 CGCGGGATCGAGACAAACCTTTATGCTCAGTTCAAGTGTGATTCTCTCAAGATCGGAATG 1071
|| || || ||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 983 CGTGGAATAGAGACAAACCTTTATGCTCAGTTCAAGTGTGATTCCCTCAAGATTGGAATG 1042
Query 1072 GTGAAGCA-CGTTGAAGTAGCACAGTTTCTCGGAGGACGACTTTACGACTGTGTCTTTAA 1130
|||||||| | |||||||||||||||||||||||||| ||||| ||||||||| | ||
Sbjct 1043 GTGAAGCATCCA-GAAGTAGCACAGTTTCTCGGAGGACGGCTTTATGACTGTGTCATCAA 1101
Query 1131 ATTCAATGAAGTTCAGAGTTAATTACATTTCA-ATG-ATATTGT-ACTGAATCATCCATT 1187
|| |||||||||||||||||||||| |||||| | | ||| | |||||| || |||||
Sbjct 1102 ATACAATGAAGTTCAGAGTTAATTATATTTCACAAACACATTTTTACTGAACCAGCCATT 1161
Query 1188 C 1188
|
Sbjct 1162 C 1162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45137533728
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5