BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17340.1
Length=1352
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480618 jgi|Araly1|480618|fgenesh2_kg.3__3319__AT2G17340.1 1993 0.0
Ahg931587 jgi|Araly1|931587|scaffold_304044.1 1543 0.0
Ahg491111 jgi|Araly1|491111|fgenesh2_kg.7__544__AT4G35360.1 1242 0.0
> Ahg480618 jgi|Araly1|480618|fgenesh2_kg.3__3319__AT2G17340.1
Length=1268
Score = 1993 bits (1079), Expect = 0.0
Identities = 1198/1254 (96%), Gaps = 14/1254 (1%)
Strand=Plus/Plus
Query 9 TCATTTCTGAAGATCATCACAAGCAAAGAAAATGGAGAGCGATTCAGAGATGGTTCCGTT 68
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 TCATTTCTGAAGATCATCACAAGCTAAGAAAATGGAGAGCGATTCAGAGATGGTTCCGTT 60
Query 69 TCCTCAACTACCGATGCCAATAGAAAACAACTACAGAGCTTGCACAATTCCTTACAGATT 128
||||||| |||||| ||| ||||||| |||||||||||||||||| ||||||||||||||
Sbjct 61 TCCTCAATTACCGACGCCGATAGAAACCAACTACAGAGCTTGCACCATTCCTTACAGATT 120
Query 129 TCCTTCTGATGATCCCAAGAAAGCCACTCCAAATGAAATCTCGTGGATCAACGTCTTCGC 188
||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||
Sbjct 121 CCCTTCTGATGATCCCAAGAAAGCTACTCCTACTGAAATCTCGTGGATCAACGTCTTCGC 180
Query 189 CAATTCCATTCCTTCTTTCAAGAAACGTGCAGAGAGCGATATC-ACTGTTCCAGATGCTC 247
||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct 181 CAATTCCATTCCTTCTTTCAAGAAACGTGCAGAGAGCGATA-CAACGGTTCCAGATGCTC 239
Query 248 CTGCTAGAGCTGAAAAATTTGCAGAAAGATATGCTGGG-ATTCTTGAAGACTTGAAGAAA 306
|||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 240 CTGCTAGAGCTGAAAATTTTGCAGAAAGATATGC-GGGAATTCTTGAAGACTTGAAGAAA 298
Query 307 GATCCAGAGAGTCATGGCGGACCACCAGATGGCATTCTTCTATGCCGACTTCGTGAGCAA 366
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 299 GATCCAGAGAGTCATGGCGGGCCACCAGATGGTATTCTTCTATGCCGACTTCGTGAGCAA 358
Query 367 GTACTCAGAGAGTTAGGATTTAGGGACATATTCAAGAAAGTTAAGGATGAGGAGAATGCA 426
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 359 GTACTCAGAGAATTAGGATTTAGGGACATATTCAAGAAAGTGAAGGATGAGGAGAATGCA 418
Query 427 AAGGCTATATCACTATTTCCTCAAGTTGTCAGTCTGAGTGATGCTATTGAAGATGACGGA 486
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 419 AAGGCTATATCACTATTTCCTGAAGTTGTCAGTCTGAGTGATGCTATTGAAGATGACGGA 478
Query 487 AAACGGTTAGAGAATTTGGTGAGAGGGATATTTGCTGGAAACATCTTTGATCTTGGTTCT 546
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 479 AAACGGTTAGAGAATTTGGTGAGAGGGATATTTGCTGGAAACATCTTTGATCTGGGTTCT 538
Query 547 GCACAGCTTGCTGAAGTTTTCTCAAGGGATGGTATGTCTTTCTTGGCTAGCTGTCAAAAC 606
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GCACAGCTTGCTGAAGTTTTCTCAAGGGATGGTATGTCTTTCTTGGCTAGCTGTCAAAAT 598
Query 607 TTGGTTCCACGACCATGGGTCATTGATGACTTGGAAAACTTCCAAGCCAAATGGATCAAT 666
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTGGTTCCACGACCATGGGTCATTGATGACTTGGAAAACTTCCAAGCCAAATGGATCAAC 658
Query 667 AAGTCTTGGAAGAAGGCAGTGATTTTTGTTGATAATTCTGGTGCAGACATAATTTTGGGT 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AAGTCTTGGAAGAAGGCAGTGATTTTTGTTGATAATTCTGGTGCAGACATAATTTTGGGT 718
Query 727 ATTTTGCCGTTTGCAAGAGAGTTGCTCCGTCGAGGAGCTCAGGTGGTGCTGGCTGCTAAT 786
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 719 ATTTTGCCGTTTGCAAGAGAGTTGCTCCGTCGAGGAACTCAGGTTGTGCTGGCTGCTAAT 778
Query 787 GAGCTGCCATCTATCAATGACATAACATGTACCGAGCTTACAGAAATCTTGTCACAGTTG 846
|| ||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||
Sbjct 779 GAACTGCCATCTATCAATGACATAACATATACCGAGCTTACAGAGATCTTGACACAGTTG 838
Query 847 AAGGATGAAAATGGCCAATTGCTAGGTGTTGATACTTCGAAGCTTCTGATTGCAAATTCG 906
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 839 AAGGATGAAAATGGCCAATTGCTAGGCGTTGATACTTCGAAGCTTCTGATTGCAAATTCG 898
Query 907 GGGAATGACTTACCAGTTATCGATCTCTCAAGAGTATCACAGGAGCTTGCTTACCTTTCA 966
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 899 GGGAATGACTTACCAGTTATCGATCTCTCAAGAGTATCACAGGAGCTTGCTTATCTTTCA 958
Query 967 TCTGATGCCGACTTAGTCATCGTAGAAGGCATGGGTCGTGGAATTGAGACAAACCTTTAT 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TCTGATGCCGACTTAGTCATCGTAGAAGGCATGGGTCGTGGAATTGAGACAAACCTTTAT 1018
Query 1027 GCTCAGTTCAAGTGTGATTCTCTCAAGATTGGAATGGTGAAGCATCTTGAAGTAGCAGAG 1086
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1019 GCTCAGTTCAAGTGTGATTCTCTGAAGATTGGAATGGTGAAGCATCTTGAAGTAGCAGAG 1078
Query 1087 TTTCTCGGAGGACGGCTCTATGACTGTGTCTTCAAATTCAATGAAGTTCAGAGCTAATTA 1146
|||||||||||||| || ||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1079 TTTCTCGGAGGACGACTTTATGACTGTGTTTTCAAATACAATGAAGTTCAGAGCTAATTA 1138
Query 1147 GTATTTCAGTACTCTCCAGTCTCACTTCTCTCTTACTGTCATTTTTAATTCAAAACATAG 1206
|||||||||| ||| |||||||||||||| | |||||| |||||| |||||||||||||
Sbjct 1139 -TATTTCAGTAATCTTCAGTCTCACTTCTCCCCTACTGTGATTTTTTATTCAAAACATAG 1197
Query 1207 GGTACAAAAAGTAATA-TTT-T--TCC-----ATCTTGATATGGTAAATCAATT 1251
| |||||| ||||||| ||| | ||| ||||||||||||||| ||||||
Sbjct 1198 GATACAAAGAGTAATACTTTATGCTCCTTTCCATCTTGATATGGTAATTCAATT 1251
> Ahg931587 jgi|Araly1|931587|scaffold_304044.1
Length=1126
Score = 1543 bits (835), Expect = 0.0
Identities = 1019/1108 (92%), Gaps = 12/1108 (1%)
Strand=Plus/Plus
Query 55 GAGATGGTTCCGTTTCCTCAACTACCGATGCCAATAGAAAACAACTACAGAGCTTGCACA 114
|||||| |||||||||||| |||||| ||| || |||| |||||||||||| |||||
Sbjct 18 GAGATGATTCCGTTTCCTCTGTTACCGACGCCGATTGAAACCAACTACAGAGCCTGCACC 77
Query 115 ATTCCTTACAGATTTCCTTCTGATGATCCCAAGAAAGCCACTCCAAATGAAATCTCGTGG 174
|||||||| ||||| |||| |||| ||| |||||||||||||| | |||||||||||||
Sbjct 78 ATTCCTTATAGATTCCCTTGTGATAATCTGAAGAAAGCCACTCCTACTGAAATCTCGTGG 137
Query 175 ATCAACGTCTTCGCCAATTCCATTCCTTCTTTCAAGAAACGTGCAGAGAGCGATATCACT 234
|||||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 138 ATCAACGTCTTCGCTAATTCCATCCCTTCGTTCAAGAAACGAGCAGAGAGCGATATCACT 197
Query 235 GTTCCAGATGCTCCTGCTAGAGCTGAAAA-ATTTGCAGAAAGATATGCTGGG-ATTCTTG 292
||||||||||||||||| |||||| |||| |||||||||||||||||| ||| |||||||
Sbjct 198 GTTCCAGATGCTCCTGCGAGAGCT-AAAATATTTGCAGAAAGATATGC-GGGAATTCTTG 255
Query 293 AAGACTT-GAAGAAAGATCCAGAGAGTC-ATGGCGGACCACCAGATGGCATTCTTCTATG 350
|||| || |||||||||||||||||| | ||||||| ||||||||||||||| |||| |
Sbjct 256 AAGA-TTGGAAGAAAGATCCAGAGAG-CAATGGCGGGCCACCAGATGGCATTATTCTCGG 313
Query 351 CCGACTTCGTGAGCAAGTACTCAGAGAGTTAGGATTTAGGGACATATTCAAGAAAGTTAA 410
|||| |||||||||| ||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 314 CCGAGTTCGTGAGCATTTACTCAGAGAGTTAGGATTTAAGGACATATTCAAGAAAGTCAA 373
Query 411 GGATGAGGAGAATGCAAAGGCTATATCACTATTTCCTCAAGTTGTCAGTCTGAGTGATGC 470
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 374 GGATGAAGAGAATGCAAAGGCTATATCACTATTTCCTGAAGTTGTCAGTCTGAGTGATGC 433
Query 471 TATTGAAGATGACGGAAAACGGTTAGAGAATTTGGTGAGAGGGATATTTGCTGGAAACAT 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 TATTGAAGATGACGGAAAACGGTTAGAGAATTTGGTGAGAGGGATATTTGCTGGAAACAT 493
Query 531 CTTTGATCTTGGTTCTGCACAGCTTGCTGAAGTTTTCTCAAGGGATGGTATGTCTTTCTT 590
||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 494 CTTTGATCTAGGTTCTGCACAGCTTGCTGAGGTTTTCTCAAGGGATGGCATATCTTTCTT 553
Query 591 GGCTAGCTGTCAAAACTTGGTTCCACGACCATGGGTCATTGATGACTTGGAAAACTTCCA 650
||||| ||||||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 554 GGCTACCTGTCAAAACTTGGTACCACGACCTTGGGTCATTGATGACTTGGACAACTTCCA 613
Query 651 AGCCAAATGGATCAATAAGTCTTGGAAGAAGGCAGTGATTTTTGTTGATAATTCTGGTGC 710
||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 614 AGCCAAATGGATCAAGAAGCCTTGGAAGAAGGCAGTGATATTTGTTGATAATTCTGGTGC 673
Query 711 AGACATAATTTTGGGTATTTTGCCGTTTGCAAGAGAGTTGCTCCGTCGAGGAGCTCAGGT 770
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 674 AGACATAATTTTGGGTATTTTGCCGTTTGCAAGAGAGCTGCTCCGTCGAGGAACTCAGGT 733
Query 771 GGTGCTGGCTGCTAATGAGCTGCCATCTATCAATGACATAACATGTACCGAGCTTACAGA 830
||||||||||||||| ||||||||| ||||||| || |||||| |||||||||||||||
Sbjct 734 GGTGCTGGCTGCTAACGAGCTGCCAGCTATCAACGATGTAACATATACCGAGCTTACAGA 793
Query 831 AATCT-TGTCACAGTTGAAGGATGAAAATGGCCAATTGCTAGGTGTTGATACTTCGAAGC 889
|| | |||| ||||||||||||| ||||||||||||| |||||||||||||||| ||||
Sbjct 794 TAT-TGTGTCGCAGTTGAAGGATGGAAATGGCCAATTGATAGGTGTTGATACTTCAAAGC 852
Query 890 TTCTGATTGCAAATTCGGGGAATGACTTACCAGTTATCGATCTCTCAAGAGTATCACAGG 949
|||||||||||||||| |||||||| ||| | |||||||||||||||||||||||||| |
Sbjct 853 TTCTGATTGCAAATTCAGGGAATGATTTAGCGGTTATCGATCTCTCAAGAGTATCACATG 912
Query 950 AGCTTGCTTACCTTTCATCTGATGCCGACTTAGTCATCGTAGAAGGCATGGGTCGTGGAA 1009
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
Sbjct 913 AGCTTGCTTACCTTTCATCTGATGCAGACTTAGTCATCCTAGAAGGCATGGGTCGTGGGA 972
Query 1010 TTGAGACAAACCTTTATGCTCAGTTCAAGTGTGATTCTCTCAAGATTGGAATGGTGAAGC 1069
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 973 TCGAGACAAACCTTTATGCTCAGTTCAAGTGTGATTCTCTCAAGATCGGAATGGTGAAGC 1032
Query 1070 ATCTTGAAGTAGCAGAGTTTCTCGGAGGACGGCTCTATGACTGTGTCTTCAAATTCAATG 1129
|| ||||||||||| |||||||||||||||| || || ||||||||||| |||| |||||
Sbjct 1033 ATGTTGAAGTAGCACAGTTTCTCGGAGGACGACTTTACGACTGTGTCTTTAAATACAATG 1092
Query 1130 AAGTTCAGAGCTAATTAGTATTTCAGTA 1157
|||||||||| |||| | |||||||||
Sbjct 1093 AAGTTCAGAGTTAAT-AC-ATTTCAGTA 1118
> Ahg491111 jgi|Araly1|491111|fgenesh2_kg.7__544__AT4G35360.1
Length=1309
Score = 1242 bits (672), Expect = 0.0
Identities = 983/1132 (87%), Gaps = 26/1132 (2%)
Strand=Plus/Plus
Query 36 GAA-AATGGAGAGCGATTCAGAGATGGTTCCGTTTCCTCAACTACCGATGCCAATAGAAA 94
||| |||||||||||| || ||||||||| |||| |||| |||||| ||| |||| ||
Sbjct 15 GAAGAATGGAGAGCGACTCCGAGATGGTTGCGTTGCCTCTGTTACCGACGCCGATAG-AA 73
Query 95 AC-AACTACAGAGCTTGCACAATTCCTTA-CAGATTTCCTTCTGATGATCCCAAGAAA-G 151
| |||||||| |||||||| |||||||| | |||| ||||||||| || || ||||| |
Sbjct 74 TCAAACTACAGGGCTTGCACCATTCCTTATC-GATTCCCTTCTGATAAT-CCTAGAAAGG 131
Query 152 CCACTCCAAATGAAATCTCGTGGATC-AACGTCTTCGCCAATTCCATTCCTTCTTTCAAG 210
| ||||| | ||| ||||| |||||| | | ||||| |||||||||| ||||||||||||
Sbjct 132 CTACTCCTACTGAGATCTCTTGGATCGATC-TCTTCTCCAATTCCATCCCTTCTTTCAAG 190
Query 211 AAACGTGCAGAGAGCGATATC-ACTGTTCCAGATGCTCCTGCTAGAGCTGAAAAATTTG- 268
||||||||||||| || | | || |||||||||||||||| | |||||||||||||||
Sbjct 191 GAACGTGCAGAGAGTGACA-CAACCGTTCCAGATGCTCCTGTTCGAGCTGAAAAATTTGC 249
Query 269 CAGAAAGATATGCTGG-GATTCTTGAAGACTTGAAGAAAGATCCAGAGAGTCATGGCGGA 327
|| |||| ||||| || ||||||||| ||||||||||||||||| ||||| ||||| ||
Sbjct 250 CA-AAAGGTATGC-GGAGATTCTTGAGGACTTGAAGAAAGATCCGGAGAGCCATGGTGGT 307
Query 328 CCACCAGATGGCATTCTTCTATGCCGACTTCGTGAGC-AAGTACTCAGAGAGTTAGGATT 386
||||||||| |||||||||| ||| || | ||||||| || |||| ||||| || |||||
Sbjct 308 CCACCAGATTGCATTCTTCTCTGCAGAATCCGTGAGCTAA-TACTAAGAGAATTGGGATT 366
Query 387 TAGGGACATATTCAAGAAAGTTAAGGATGAGGAGAATGCAAAGGCTATATCACTATTTCC 446
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 367 TAGGGACATATTCAAGAAAGTTAAGGACGACGAGAATGCAAAGGCTATATCACTATTTCC 426
Query 447 TCAAGTTGTCAGTCTGAGTGATGCTATTGAAGATGACGGAAAACGGTTAGAGAATTTGGT 506
|||||||| || |||||||||||||||| ||||| || || || |||||||| ||||
Sbjct 427 AGAAGTTGTCCGTTTGAGTGATGCTATTGACGATGAAGGCAAGCGCATAGAGAATCTGGT 486
Query 507 GAGAGGGATATTTGCTGGAAACATCTTTGATCTTGGTTCTGCACAGCTTGCTGAAGTTTT 566
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 487 CAGAGGGATATTTGCTGGAAACATCTTTGATCTGGGTTCTGCACAGCTTGCTGAGGTTTT 546
Query 567 CTCAAGGGATGGTATGT-CTTTCTTGGCTAGCTGTCAAAACTTGGTTCCACGACCATGGG 625
||||| || || |||| |||| |||||||||||||| ||||||||| ||||||||||||
Sbjct 547 CTCAAAAGACGGCATGTCCTTT-TTGGCTAGCTGTCAGAACTTGGTTTCACGACCATGGG 605
Query 626 TCATTGATGACTTGGAAAACTTCCAAGCCAAATGGATCAATAAGTCTTGGAAGAAGGCAG 685
|||||||||||||||| ||||| ||||| | |||| |||| ||| ||||||||||||| |
Sbjct 606 TCATTGATGACTTGGATAACTTTCAAGCTAGATGGGTCAAAAAGCCTTGGAAGAAGGCTG 665
Query 686 TGATTTTTGTTGATAATTCTGGTGCAGACATAATTTTGGGTATTTTGCCGTTTGCAAGAG 745
|||| ||||| |||||||||||||||||||||||||||||||| ||||| |||| ||||
Sbjct 666 TGATATTTGTCGATAATTCTGGTGCAGACATAATTTTGGGTATCTTGCCCTTTGTTAGAG 725
Query 746 AGTTGCTCCGTCGAGGAGCT-CAGGTGGTGCTGGCTGCTAATGAGCTGCCATCTATCAAT 804
| |||| ||||||||| | ||||| |||||||||||||||||||| |||||||||||
Sbjct 726 AAATGCTACGTCGAGGA-ATGCAGGTTGTGCTGGCTGCTAATGAGCTTCCATCTATCAAC 784
Query 805 GACATAACATGTACCGAGCTTACAGAAATCTTGTC-ACAGTTGAAGGATGAAAATGGCCA 863
|| |||| | || ||||||| |||| |||||||| | || ||||||||||||| || ||
Sbjct 785 GATGTAACTTATATCGAGCTTGCAGAGATCTTGTCTA-AGCTGAAGGATGAAAAAGGACA 843
Query 864 ATTGCTAGGTGTTGATACTTCGAAGCTTCTGATTGCAAATTCGGGGAATGACTTACCAGT 923
|||| | ||||||||||| ||||| ||||| ||||||||||| ||||| |||||||| ||
Sbjct 844 ATTGATGGGTGTTGATACCTCGAATCTTCTTATTGCAAATTCAGGGAACGACTTACCGGT 903
Query 924 TATCGATCTCT-CAAGAGTATCACAGGAGCTTGCTTACCTTTCATCTGATGCCGACTTAG 982
||| ||||| | ||||||||||||||||| |||| ||||| ||| | ||||| ||||| |
Sbjct 904 TATTGATCT-TGCAAGAGTATCACAGGAGGTTGCGTACCTCTCAACCGATGCAGACTTGG 962
Query 983 TCATCGTAGAAGGCATGGGTCGTGGAATTGAGACAAACCTTTATGCTCAGTTCAAGTGTG 1042
||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 963 TCATCTTAGAAGGCATGGGCCGTGGAATAGAGACAAACCTTTATGCTCAGTTCAAGTGTG 1022
Query 1043 ATTCTCTCAAGATTGGAATGGTGAAGCATCTTGAAGTAGCAGAGTTTCTCGGAGGACGGC 1102
|||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1023 ATTCCCTCAAGATTGGAATGGTGAAGCATCCAGAAGTAGCACAGTTTCTCGGAGGACGGC 1082
Query 1103 TCTATGACTGTGTCTTCAAATTCAATGAAGTTCAGAGCTAATTAGTATTTCA 1154
| |||||||||||| |||||| ||||||||||||||| |||||| |||||||
Sbjct 1083 TTTATGACTGTGTCATCAAATACAATGAAGTTCAGAGTTAATTA-TATTTCA 1133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50589110859
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5