BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G17350.1 Length=745 Score E Sequences producing significant alignments: (Bits) Value Ahg931589 jgi|Araly1|931589|scaffold_304046.1 656 0.0 > Ahg931589 jgi|Araly1|931589|scaffold_304046.1 Length=396 Score = 656 bits (355), Expect = 0.0 Identities = 383/396 (97%), Gaps = 4/396 (1%) Strand=Plus/Plus Query 209 GAATTTGCTTCG-A-A-G-ACGATGTCGCTGAGAATTAAATTAGTGGTGGATAAGTTTGT 264 ||||||| |||| | | | ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GAATTTGTTTCGAAGACGAACGATGTCGCTGAGAATTAAATTAGTGGTGGATAAGTTTGT 60 Query 265 GGAGGAGCTTAAGCAAGCACTTGACGCTGATATACAAGATCGGATCATGAAGGAGAGAGA 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GGAGGAGCTTAAGCAAGCACTTGACGCTGATATACAAGATCGGATCATGAAGGAGAGAGA 120 Query 325 GATGCAGAGTTATATAGAAGAGCGTGAGCGTGAAGTCGCTGAGCGAGAAGCTGCCTGGAA 384 |||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 121 GATGCAAAGTTATATCGAAGAGCGTGAGCGTGAAGTCGCTGAACGAGAAGCTGCGTGGAA 180 Query 385 AGCTGAGCTCTCTCGCCGTGAGACGGAGATCGCTAGACAGGAAGCGAGGTTGAAGATGGA 444 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 181 AGCTGAGCTCTCTCGCCGTGAGACGGAGATTGCTAGACAGGAAGCGAGGTTGAAGATGGA 240 Query 445 GAGAGAGAATCTGGAGAAGGAGAAGAGTGTTCTTATGGGGACTGCGTCGAATCAGGATAA 504 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 241 GAGAGAGAATCTGGAGAAGGAGAAGAGTGTTCTCATGGGGACTGCGTCGAATCAGGATAA 300 Query 505 TCAAGATGGTGCTCTGGAAATTACTGTGAGTGGTGAGAAATATCGGTGTCTTAGATTCTC 564 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 301 TCAAGATGGTGCTCTTGAAATTACTGTGAGTGGTGAGAAATATCGATGTCTTAGATTCTC 360 Query 565 TAAGGCTAAGAAATGAGGTTGGAAATTGGAATCTGG 600 |||||||||||||||||||||||||||||||||||| Sbjct 361 TAAGGCTAAGAAATGAGGTTGGAAATTGGAATCTGG 396 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27448500240 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5