BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G17350.1

Length=745
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg931589 jgi|Araly1|931589|scaffold_304046.1                        656    0.0  


> Ahg931589 jgi|Araly1|931589|scaffold_304046.1
Length=396

 Score =  656 bits (355),  Expect = 0.0
 Identities = 383/396 (97%), Gaps = 4/396 (1%)
 Strand=Plus/Plus

Query  209  GAATTTGCTTCG-A-A-G-ACGATGTCGCTGAGAATTAAATTAGTGGTGGATAAGTTTGT  264
            ||||||| |||| | | | |||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GAATTTGTTTCGAAGACGAACGATGTCGCTGAGAATTAAATTAGTGGTGGATAAGTTTGT  60

Query  265  GGAGGAGCTTAAGCAAGCACTTGACGCTGATATACAAGATCGGATCATGAAGGAGAGAGA  324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GGAGGAGCTTAAGCAAGCACTTGACGCTGATATACAAGATCGGATCATGAAGGAGAGAGA  120

Query  325  GATGCAGAGTTATATAGAAGAGCGTGAGCGTGAAGTCGCTGAGCGAGAAGCTGCCTGGAA  384
            |||||| |||||||| |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct  121  GATGCAAAGTTATATCGAAGAGCGTGAGCGTGAAGTCGCTGAACGAGAAGCTGCGTGGAA  180

Query  385  AGCTGAGCTCTCTCGCCGTGAGACGGAGATCGCTAGACAGGAAGCGAGGTTGAAGATGGA  444
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  181  AGCTGAGCTCTCTCGCCGTGAGACGGAGATTGCTAGACAGGAAGCGAGGTTGAAGATGGA  240

Query  445  GAGAGAGAATCTGGAGAAGGAGAAGAGTGTTCTTATGGGGACTGCGTCGAATCAGGATAA  504
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  241  GAGAGAGAATCTGGAGAAGGAGAAGAGTGTTCTCATGGGGACTGCGTCGAATCAGGATAA  300

Query  505  TCAAGATGGTGCTCTGGAAATTACTGTGAGTGGTGAGAAATATCGGTGTCTTAGATTCTC  564
            ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  301  TCAAGATGGTGCTCTTGAAATTACTGTGAGTGGTGAGAAATATCGATGTCTTAGATTCTC  360

Query  565  TAAGGCTAAGAAATGAGGTTGGAAATTGGAATCTGG  600
            ||||||||||||||||||||||||||||||||||||
Sbjct  361  TAAGGCTAAGAAATGAGGTTGGAAATTGGAATCTGG  396



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27448500240


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5