BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17360.1
Length=1079
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931590 jgi|Araly1|931590|scaffold_304047.1 1467 0.0
Ahg495959 jgi|Araly1|495959|fgenesh2_kg.8__1775__AT5G58420.1 1000 0.0
Ahg487529 jgi|Araly1|487529|fgenesh2_kg.6__663__AT5G07090.1 998 0.0
> Ahg931590 jgi|Araly1|931590|scaffold_304047.1
Length=914
Score = 1467 bits (794), Expect = 0.0
Identities = 880/921 (96%), Gaps = 7/921 (1%)
Strand=Plus/Plus
Query 12 AAACTTAAAATTAGGGCTTTGTGTTTCGCTTCTTCTCAAACCCTAGAAGATATAATTGAG 71
|||||||||||||||| |||| |||||||||||||| |||||||||||||||||| ||||
Sbjct 1 AAACTTAAAATTAGGGTTTTGAGTTTCGCTTCTTCTGAAACCCTAGAAGATATAAGTGAG 60
Query 72 ACTGGCTTGCTTAGCCGCGGAGAACTCAGAACTCATTCGCTGCAAACATGGCAAGAGGTT 131
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTGGTTTGCTTAGCCGCGGAGAACTCAGAACTCATTCGCTGCAAACATGGCAAGAGGTT 120
Query 132 TGAAGAAGCATTTGAAGAGGCTCAATGCTCCTAAGCATTGGATGCTTGATAAACTTGGTG 191
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGAAGAAGCATTTGAAGAGGATCAATGCTCCTAAGCATTGGATGCTTGATAAACTTGGTG 180
Query 192 GTGCCTTTGCCCCCAAGCCGTCTTCTGGGCCACACAAGTCTAGGGAGTGTTTACCCTTGG 251
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GTGCCTTTGCCCCCAAGCCGTCTTCTGGGCCACACAAGTCTAGGGAGTGTTTACCCCTGG 240
Query 252 TCCTTATCATCAGGAACAGGTTGAAGTATGCTCTGACATACAGAGAAGTGATTTCGATCT 311
| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 241 TTCTTATCATCAGGAACAGGTTGAAGTATGCCCTTACATACAGAGAAGTGATCTCGATCT 300
Query 312 TGATGCAAAGGCATATTCAGGTTGATGGGAAAGTGAGGACTGACAAGACTTACCCTGCTG 371
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGATGCAAAGGCATATTCAAGTTGATGGGAAAGTGAGGACTGACAAGACTTACCCTGCTG 360
Query 372 GTTTCATGGATGTTGTGTCTATCCCCAAAACAAATGAGAACTTCCGTCTTTTGTATGACA 431
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 361 GTTTCATGGATGTTGTGTCTATCCCAAAAACAAATGAGAACTTCCGTCTTTTGTATGACA 420
Query 432 CCAAGGGACGTTTCCGTCTCCACTCCATCAAGGATGAGGAGGCTAAGTTCAAGCTTTGCA 491
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 421 CCAAGGGACGCTTCCGTCTCCACTCCATCAAGGATGAGGAAGCGAAGTTCAAGCTTTGCA 480
Query 492 AAGTGAGATCGATCCAATTTGGTCAGAAGGGTATTCCCTACTTGAACACATATGATGGTC 551
| |||||||||||||| |||||||||||||| ||||| | ||||||||||||||||||||
Sbjct 481 AGGTGAGATCGATCCAGTTTGGTCAGAAGGGCATTCCGTTCTTGAACACATATGATGGTC 540
Query 552 GCACCATCCGTTATCCTGACCCGCTCATCAAGCCTAACGACACCATCAAGCTCGACCTTG 611
||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 541 GCACCATCCGTTACCCCGACCCGCTCATCAAGCCTAACGACACCATCAAGCTTGACCTTG 600
Query 612 AGGAGAACAAGATTGTGGAGTTCATTAAGTTTGATGTGGGCAACGTAGTTATGGTCACTG 671
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 601 AGGAGAACAAGATTGTGGAGTTCATTAAGTTTGATGTGGGCAATGTAGTTATGGTCACTG 660
Query 672 GAGGAAGAAACAGAGGGCGTGTTGGTGTGATTAAGAACCGTGAGAAACACAAGGGTAGCT 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 661 GAGGAAGAAACAGAGGGCGTGTTGGTGTGATTAAGAACCGTGAGAAACACAAGGGAAGCT 720
Query 732 TTGAAACCATCCACATTCAAGACTCAACAGGACATGAGTTTGCAACAAGGTTGGGAAATG 791
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 721 TTGAAACCATCCACATTCAAGACTCAACAGGACATGAGTTTGCTACAAGGTTGGGAAATG 780
Query 792 TGTACACAATCGGTAAGGGAACAAAGCCATGGGTGTCCCTTCCAAAGGGTAAAGGTATTA 851
||| ||||||||| || |||||||||||||||||||| || |||||||| ||||||||||
Sbjct 781 TGTTCACAATCGGGAAAGGAACAAAGCCATGGGTGTCTCTACCAAAGGGCAAAGGTATTA 840
Query 852 AGTTGACCATCATTGAGGAAGCCAGGAAGAGACTTTCTGCTCAACAAGCTTGATAGTTAA 911
||||||||||||||||||||||||||||||||||||||||||||||||||| | | | |
Sbjct 841 AGTTGACCATCATTGAGGAAGCCAGGAAGAGACTTTCTGCTCAACAAGCTT-A-A-T-A- 895
Query 912 TACTATGCTCTGTTTTCCAGT 932
||||||| |||||||||||
Sbjct 896 --CTATGCTTTGTTTTCCAGT 914
> Ahg495959 jgi|Araly1|495959|fgenesh2_kg.8__1775__AT5G58420.1
Length=1014
Score = 1000 bits (541), Expect = 0.0
Identities = 707/789 (90%), Gaps = 4/789 (1%)
Strand=Plus/Plus
Query 115 AAACATGGCAAGAGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCTAAGCATTGGAT 174
||||||||| || |||||||||||||||||||||||| | ||||| || |||||||||||
Sbjct 39 AAACATGGCGAGGGGTTTGAAGAAGCATTTGAAGAGGATTAATGCGCCGAAGCATTGGAT 98
Query 175 GCTTGATAAACTTGGTGGTGCCTTTGCCCCCAAGCCGTCTTCTGGGCCACACAAGTCTAG 234
|||||| |||||||||||||| |||||||| |||||||||||||| ||||| ||||| ||
Sbjct 99 GCTTGACAAACTTGGTGGTGCATTTGCCCCAAAGCCGTCTTCTGGACCACATAAGTCGAG 158
Query 235 GGAGTG-TTTACCCTTGGTCCTTATCATCAGGAACAGGTTGAAGTATGCTCTGACATACA 293
|||||| || ||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 159 GGAGTGCCTTCCCCTT-GTCCTTATCATCAGGAACAGGTTGAAGTATGCTCTTACCTACC 217
Query 294 GAGAAGTGATTTCGATCTTGATGCAAAGGCATATTCAGGTTGATGGGAAAGTGAGGACTG 353
| ||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 218 GTGAAGTGATTTCTATCTTGATGCAAAGGCATATCCAAGTTGATGGGAAAGTCAGGACTG 277
Query 354 ACAAGACTTACCCTGCTGGTTTCATGGATGTTGTGTCTATCCCCAAAACAAATGAGAACT 413
||||||| ||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 278 ACAAGACCTACCCTGCTGGTTTCATGGATGTTGTGTCTATCCCTAAGACCAATGAGAACT 337
Query 414 TCCGTCTTTTGTATGACACCAAGGGACGTTTCCGTCTCCACTCCATCAAGGATGAGGAGG 473
|||||||| | ||||| |||||||| |||||||||||||||||||||| ||||||||| |
Sbjct 338 TCCGTCTTCTCTATGATACCAAGGGCCGTTTCCGTCTCCACTCCATCAGGGATGAGGAAG 397
Query 474 CTA-AGTTCAAGCTTTGCAAAGTGAGATCGATCCAATTTGGTCAGAAGGGTATTCCCTAC 532
| | |||||||||||||||| || |||| ||||| ||||| |||||||| ||||| | |
Sbjct 398 C-ACAGTTCAAGCTTTGCAAGGTCCGATCTATCCAGTTTGGACAGAAGGGCATTCCATTC 456
Query 533 TTGAACACATATGATGGTCGCACCATCCGTTATCCTGACCCGCTCATCAAGCCTAACGAC 592
|||||||||| |||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 457 CTGAACACATACGATGGTCGCACCATCCGTTACCCTGACCCTCTCATCAAGCCTAATGAC 516
Query 593 ACCATCAAGCTCGACCTTGAGGAGAACAAGATTGTGGAGTTCATTAAGTTTGATGTGGGC 652
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 517 ACCATCAAGCTCGACCTTGAGGCCAACAAGATTGTGGAGTTCATCAAGTTTGATGTGGGC 576
Query 653 AACGTAGTTATGGTCACTGGAGGAAGAAACAGAGGGCGTGTTGGTGTGATTAAGAACCGT 712
|| || || |||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 577 AATGTTGTGATGGTCACAGGAGGTAGAAACAGAGGGCGTGTTGGTGTGATTAAAAACCGT 636
Query 713 GAGAAACACAAGGGTAGCTTTGAAACCATCCACATTCAAGACTCAACAGGACATGAGTTT 772
||||| || ||||| |||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 637 GAGAAGCATAAGGGAAGCTTTGAGACAATCCACATCCAAGACTCAACAGGACATGAGTTT 696
Query 773 GCAACAAGGTTGGGAAATGTGTACACAATCGGTAAGGGAACAAAGCCATGGGTGTCCCTT 832
|||||||||||||| ||||||| ||| || || || || ||||||||||||||||| |||
Sbjct 697 GCAACAAGGTTGGGGAATGTGTTCACCATTGGCAAAGGTACAAAGCCATGGGTGTCTCTT 756
Query 833 CCAAAGGGTAAAGGTATTAAGTTGACCATCATTGAGGAAGCCAGGAAGAGACTTTCTGCT 892
|| |||||||||||||||||| |||| ||||| ||||| ||||||||||| ||| ||| |
Sbjct 757 CCCAAGGGTAAAGGTATTAAGCTGACTATCATCGAGGAGGCCAGGAAGAGGCTTGCTGGT 816
Query 893 CAACAAGCT 901
||||| |||
Sbjct 817 CAACAGGCT 825
> Ahg487529 jgi|Araly1|487529|fgenesh2_kg.6__663__AT5G07090.1
Length=1097
Score = 998 bits (540), Expect = 0.0
Identities = 712/796 (89%), Gaps = 8/796 (1%)
Strand=Plus/Plus
Query 110 GCTGCAAACATGGCAAGAGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCTAAGCAT 169
|||||||||||||||||||| |||||||||||| | |||||| |||||||||||||||||
Sbjct 22 GCTGCAAACATGGCAAGAGGATTGAAGAAGCATCTAAAGAGGATCAATGCTCCTAAGCAT 81
Query 170 TGGATGCTTGATAAACTTGGTGGTGCCTTTGCCCCCAAGCCGTCTTCTGGGCCACACAAG 229
||||||||||| ||||||||||||||||| || ||||| || |||||||| || ||||||
Sbjct 82 TGGATGCTTGACAAACTTGGTGGTGCCTTCGCTCCCAAACCATCTTCTGGACCTCACAAG 141
Query 230 TCTAGGGAGTGT-TTACC-CTTGGTCCTTATCATCAGGAACAGGTTGAAGTATGCTCTGA 287
|| ||||||||| || || ||| ||||| ||||||||||||||||||||||||||| |||
Sbjct 142 TCGAGGGAGTGTCTT-CCTCTT-GTCCTGATCATCAGGAACAGGTTGAAGTATGCTTTGA 199
Query 288 CATACAGAGAAGTGATTTCGATCTTGATGCAAAGGCATATTCAGGTTGATGGGAAAGTGA 347
| ||| | ||||| || || |||||||||||||||||||| || |||||||| ||||| |
Sbjct 200 CTTACCGTGAAGTTATCTCTATCTTGATGCAAAGGCATATCCAAGTTGATGGCAAAGTTA 259
Query 348 GGACTGACAAGACTTACCCTGCTGG-TTTCATGGATGTTGTGTCTATCCCCAAAACAAAT 406
||||||||||||||||||||||||| ||| ||||||||||| || |||||||| || |||
Sbjct 260 GGACTGACAAGACTTACCCTGCTGGCTTT-ATGGATGTTGTATCCATCCCCAAGACCAAT 318
Query 407 GAGAACTTCCGTCTTTTGTATGACACCAAGGGACGTTTCCGTCTCCACTCCATCAAGGAT 466
||||||||||||||| | || |||||||| ||||||||||||||||||||||||||||||
Sbjct 319 GAGAACTTCCGTCTTCTCTACGACACCAAAGGACGTTTCCGTCTCCACTCCATCAAGGAT 378
Query 467 GAGGAGGCTAAGTTCAAGCTTTGCAAAGTGAGATCGATCCAATTTGGTCAGAAGGGTATT 526
||||| | ||||||||||||||||| || ||||| ||||| |||||||||||||| |||
Sbjct 379 GAGGAATCAAAGTTCAAGCTTTGCAAGGTTAGATCTATCCAGTTTGGTCAGAAGGGAATT 438
Query 527 CCCTACTTGAACACATATGATGGTCGCACCATCCGTTATCCTGACCCGCTCATCAAGCCT 586
|| | ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 439 CCTTTCTTGAACACTTATGATGGTCGCACCATCCGTTACCCTGACCCGCTCATCAAGCCA 498
Query 587 AACGACACCATCAAGCTCGACCTTGAGGAGAACAAGATTGTGGAGTTCATTAAGTTTGAT 646
||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 499 AACGACACCATCAAGCTGGACCTTGAGGAGAACAAGATTGTTGAGTTCATCAAGTTTGAC 558
Query 647 GTGGGCAACGTAGTTATGGTCACTGGAGGAAGAAACAGAGGGCGTGTTGGTGTGATTAAG 706
||||| || || || ||||| |||||||| |||||||||||||||||||| ||||| |||
Sbjct 559 GTGGGTAATGTTGTGATGGTTACTGGAGGCAGAAACAGAGGGCGTGTTGGCGTGATCAAG 618
Query 707 AACCGTGAGAAA-CACAAGGGTAGCTTTGAAACCATCCACATTCAAGACTCAACAGGACA 765
||||| || ||| || ||||| |||||||| || || |||||||||||||||||||||||
Sbjct 619 AACCGGGA-AAAGCATAAGGGAAGCTTTGAGACGATACACATTCAAGACTCAACAGGACA 677
Query 766 TGAGTTTGCAACAAGGTTGGGAAATGTGTACACAATCGGTAAGGGAACAAAGCCATGGGT 825
||||||||| ||||||||||| ||||||| ||| ||||| || |||||||||||||||||
Sbjct 678 TGAGTTTGCCACAAGGTTGGGCAATGTGTTCACCATCGGCAAAGGAACAAAGCCATGGGT 737
Query 826 GTCCCTTCCAAAGGGTAAAGGTATTAAGTTGACCATCATTGAGGAAGCCAGGAAGAGACT 885
||| ||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 738 GTCTCTTCCAAAGGGCAAAGGTATTAAGCTGACCATCATTGAGGAAGCTAGGAAGAGACT 797
Query 886 TTCTGCTCAACAAGCT 901
| || | |||||||||
Sbjct 798 TGCTTCACAACAAGCT 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40181554518
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5