BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17370.1
Length=2141
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480621 jgi|Araly1|480621|fgenesh2_kg.3__3322__AT2G17370.1 3018 0.0
Ahg316570 jgi|Araly1|316570|fgenesh1_pm.C_scaffold_2001603 494 1e-138
> Ahg480621 jgi|Araly1|480621|fgenesh2_kg.3__3322__AT2G17370.1
Length=2085
Score = 3018 bits (1634), Expect = 0.0
Identities = 1968/2121 (93%), Gaps = 55/2121 (3%)
Strand=Plus/Plus
Query 3 AAGAAGCAGTTAGATTGTGACGGAGGAGACAAAATCATCATCTCTGTTCTTCTTCTTCTC 62
|||||| |||||||||||||| | ||||||||||||||| | || || | ||| | |
Sbjct 1 AAGAAGTAGTTAGATTGTGAC-G-GGAGACAAAATCATC-T-TC---TC-TGTTC-T-T- 49
Query 63 CTCTCTCACATACGATGATGACCCAACAACCTTGACGTTGATTTCGATGTCA-CACACAA 121
|| ||| || ||||||||||||||| | ||||||||||||||||||||| ||| ||
Sbjct 50 CT-TCT---AT--GATGATGACCCAACATCATTGACGTTGATTTCGATGTCACCAC-CAT 102
Query 122 CACTATAAATA-ACACTCTTCACCTATTTTTGTCATCTCACACTTTGGACTTTGGAGCCC 180
||||||||||| |||||||||||||||||||||| ||| || |||||||||||||
Sbjct 103 CACTATAAATATACACTCTTCACCTATTTTTGTC-TCT--CA-----GACTTTGGAGCCC 154
Query 181 AAAATAA-TCTCATAACCATTAAAAACAAATCTCCTCCTTCTCTCCGGCGTCAATGGAGG 239
|||| || ||||| |||||||||||| |||| ||||||||||| ||||||||||||||||
Sbjct 155 AAAA-AACTCTCACAACCATTAAAAA-AAAT-TCCTCCTTCTCGCCGGCGTCAATGGAGG 211
Query 240 ATCTCCGTCGTAGATTTCCGACTAAAAAGAAC---G--GA-GAAGAAATCTCTAATGTCG 293
|||||||||||||| ||||||| ||||||||| | || ||||||||||| ||||||
Sbjct 212 ATCTCCGTCGTAGACTTCCGACCAAAAAGAACGATGACGACGAAGAAATCTCCAATGTCA 271
Query 294 CCGTCGATCCTCCTCTTCGTAAAGCCTCTGACGCGCTTCCTCTTCCGTTATACCTAACCA 353
|||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 CCGTCGCTCTTCCTCCTCGTAAAGCCTCTGACGCGCTTCCTCTTCCGTTATACCTAACCA 331
Query 354 ACACTTTTTTCCTCTCGCTCTTCTTCGCTACTGTTTATTTTCTTCTTAGCCGATGGCGTG 413
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 ACACTTTCTTCCTCGCGCTCTTCTTCGCTACTGTTTATTTTCTTCTTAGCCGATGGCGTG 391
Query 414 AGAAGATCCGTAACTCGACGCCTCTTCACGTCGTTGACT-TATCTGAGATCTG-TGCTCT 471
||||||||||||||||||||||||||||||||||||| | || ||||||||| | ||||
Sbjct 392 AGAAGATCCGTAACTCGACGCCTCTTCACGTCGTTGA-TCTAAGTGAGATCTGCT-CTCT 449
Query 472 AATCGGTTTCGTTGCTTCGTTTATCTACCTCCTTGGTTTCTGTGGTATTGATCTCATTTT 531
||||||||||||||||| |||||||| |||||||||||||| ||||| ||| |||||||
Sbjct 450 CATCGGTTTCGTTGCTTCTTTTATCTATCTCCTTGGTTTCTGCGGTATCGATTTCATTTT 509
Query 532 CCGATCTTCTTCCGATGATGATGTTTGGGTTAACGATGGGATGATTCCATGTAATCAATC 591
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 510 CCGATCTTCTTCCGATGATGATGTTTGGGTTAACGATGGGATGATTCCATGTGGTCAATC 569
Query 592 CCTAGATTGTCGTGAGGTTCTTCCGATTAAACCTAATTCCGTCGATCCTCCTCGGGAATC 651
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 570 ACTAGATTGTCGAGAGATTCTTCCGATTAAACCTAATTCCGTCGATCCTCCTCGGGTTTC 629
Query 652 GGAGCTTGATTCGGTGGAAGATGAAGAAATCGTTAAATTAGTGATCGACGGAACCATCCC 711
||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 630 GGATCTTGATTCGGTGGAAGATGAAGAAATCGTTAAATCGGTGATCGACGGAACTATCCC 689
Query 712 TTCGTACTCATTGGAGACGAAACTCGGAGATTGTAAAAGAGCAGCAGCGATTAGAAGAGA 771
||||||| |||||||||||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 690 TTCGTACACATTGGAGACGAAACTTGGAGATTGCAAACGAGCAGCAGCGATTAGAAGAGA 749
Query 772 AGCGGTTCAGAGGATAACCGGTAAATCCTTAACCGGTCTTCCATTGGAAGGTTTCGATTA 831
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 750 AGCGGTTCAGAGGATAACCGGTAAATCCTTAACCGGTCTTCCATTGGAAGGTTTTGATTA 809
Query 832 CAATTCAATTTTGGGGCAATGCTGTGAGATGCCAGTTGGGTATGTTCAGATCCCAGTGGG 891
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 CAATTCAATCTTGGGGCAATGCTGTGAGATGCCAGTTGGGTATGTTCAGATCCCAGTGGG 869
Query 892 GATTGCAGGACCTTTGTTGCTTGATGGGGTTGAGTATTCAGTGCCAATGGCTACAACAGA 951
|||||| ||||||||||| || |||||| |||||||||||||||||||||||||||||||
Sbjct 870 GATTGCTGGACCTTTGTTACTCGATGGGATTGAGTATTCAGTGCCAATGGCTACAACAGA 929
Query 952 AGGTTGTTTGGTTGCTAGTACCAATAGAGGTTTTAAAGCTATACACTTGTCTGGTGGTGC 1011
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 930 AGGTTGTTTGGTTGCTAGTACCAATAGAGGTTTTAAAGCTATTCACTTGTCTGGTGGTGC 989
Query 1012 TTTTAGTGTTCTTGTGAAAGATGCCATGACTAGAGCTCCAGTTGTTAGATTCCCTTCTGC 1071
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 TTTTAGTGTTCTTATGAAAGATGCCATGACTAGAGCTCCAGTTGTTAGATTCCCTTCTGC 1049
Query 1072 AAGAAGAGCTGCTCTTGTCATGTTTTATCTTCAAGATCCTTCTAATTTCGAGAGATTGTC 1131
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1050 AAGAAGAGCTGCTCTTGTCATGTTTTATCTTCAAGATCCTGCTAATTTCGAGAGATTGTC 1109
Query 1132 TCTCATTTTCAACAAATCGAGTAGATTTGCTAGGCTTCAGAGTATTACATGCACGATTGC 1191
|||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1110 TCTCATTTTCAATAAATCGAGTAGATTTGCTAGGCTTCAGAGTATTACATGTAAGATTGC 1169
Query 1192 TGGGAGGAATCTGTATCCGAGGTTTGCGTGTAGTACTGGTGATGCTATGGGGATGAACAT 1251
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1170 TGGAAGGAATCTCTATCCGAGGTTTGCGTGTAGTACTGGTGATGCTATGGGGATGAATAT 1229
Query 1252 GGTCTCAAAAGGTGTTCAGAATGTCTTGGACTTTGTAAAGAGCGAGTTTCCTGACATGGA 1311
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1230 GGTCTCCAAAGGTGTTCAGAATGTCTTGGATTTTGTAAAGAGCGAGTTTCCTGACATGGA 1289
Query 1312 TGTTATTGGCATCTCTGGGAACTACTGTTCGGACAAGAAGGCTTCGGCTGTAAACTGGAT 1371
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1290 TGTTATTGGCATCTCTTGGAATTACTGTTCGGACAAGAAGGCTTCGGCTGTAAACTGGAT 1349
Query 1372 CGAAGGACGTGGTAAGCATGTTGTATGTGAAGCTTTTATTAAGGCTGAGATTGTGGAGAA 1431
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1350 CGAAGGACGTGGTAAGCATATTGTATGTGAAGCCTTTATTAAGGCTGAGATTGTGGAGAA 1409
Query 1432 AGTGTTGAAGACTAGCGTTGAGGCTCTTGTAGAGCTTAACACGCTCAAGAATCTTGTTGG 1491
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1410 AGTGTTGAAGACTAGCGTTGAGGCTCTTGTAGAGCTTAACACGCTCAAGAACCTTGCTGG 1469
Query 1492 TTCAGCCATGGCGGGTTCTCTTGGTGGGTTCAATGCTCATTCAAGCAATATTGTCAGCGC 1551
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||
Sbjct 1470 TTCAGCCATGGCGGGTTCTCTTGGAGGGTTCAATGCTCATGCAAGCAATATTGTCAGTGC 1529
Query 1552 TGTGTTCATCGCCACTGGCCAAGACCCAGCTCAAAACGTGGAGAGCTCACACTGTATGAC 1611
||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1530 TGTTTTCATCGCCACTGGGCAAGACCCTGCTCAAAACGTGGAGAGCTCACACTGTATCAC 1589
Query 1612 CATGATTCTTCCCGATGGTGACGACCTTCACATCTCTGTTTCAATGCCTTGCATTGAGGT 1671
| ||||| | || || |||||||||| |||||||| ||||||||||||||||||||
Sbjct 1590 CCTGATTGAAGCTGAAGGCAACGACCTTCATATCTCTGTATCAATGCCTTGCATTGAGGT 1649
Query 1672 TGGTACTGTTGGAGGTGGGACACAACTTGCATCACAAGCAGCTTGTTTGAATCTACTCGG 1731
|||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||
Sbjct 1650 TGGTACTGTTGGAGGTGGTACACAACTTGCATCACAATCAGCTTGTTTGAATCTGCTCGG 1709
Query 1732 TGTGAAAGGATCAAACAACGAGAAACCTGGCTCGAACGCACAGCAATTGGCAAGAATAGT 1791
|||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||| ||
Sbjct 1710 TGTGAAAGGATCAAACAACGAGGAACCTGGATCGAACGCACAGCAACTGGCAAGAATCGT 1769
Query 1792 GGCTGGTTCGGTTCTTGCAGGAGAGCTTTCACTAATGTCTGCTATTGCAGCTGGACAGCT 1851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1770 GGCTGGTTCGGTTCTTGCAGGAGAGCTTTCACTAATGTCTGCTATTGCAGCTGGACAGCT 1829
Query 1852 TGTGAAGAGTCACATGAAATACAACAGATCCAGCAGAGACATTGGCCCTTCGTCTCAAGT 1911
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1830 TGTGAAGAGCCACATGAAATACAACAGATCCAGCAGAGACATTGGCCCTTCGTCTCAAGT 1889
Query 1912 CAACAGGTGATGTTTGGAGCACGATGAGACGGATAATAATAAAACAA--CAAAAACCCAT 1969
|||||| ||||| ||||||||||| |||||||| ||||||||||||| ||||||||||
Sbjct 1890 CAACAGATGATGGTTGGAGCACGACGAGACGGAAAATAATAAAACAAAACAAAAACCCAA 1949
Query 1970 AATTAGATTTGATGTAATTCTAACTTCATTTGATTTCTTCTTCATCGATCTCTTTTCTTT 2029
||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||
Sbjct 1950 AATTAGATTTGATGTAATTTTAACTTCATTTTATTTCTTCTTTATCGATCTCTTTTCT-- 2007
Query 2030 TCTATCTATTTTGTACT----AAGTCTCCAAATTTTCTTAATTTATGTAAAGTC-TTTT- 2083
|| |||||||||||| ||||||||||||| ||||||||||||||||||| ||||
Sbjct 2008 -CT--CTATTTTGTACTCTTTAAGTCTCCAAATTATCTTAATTTATGTAAAGTCATTTTT 2064
Query 2084 GTCCTTCCATCTTTATGGCTT 2104
|||||||||| ||||||||||
Sbjct 2065 GTCCTTCCATATTTATGGCTT 2085
> Ahg316570 jgi|Araly1|316570|fgenesh1_pm.C_scaffold_2001603
Length=1908
Score = 494 bits (267), Expect = 1e-138
Identities = 946/1267 (75%), Gaps = 74/1267 (6%)
Strand=Plus/Plus
Query 667 GGAAGATGAAGAAATCGTTAAATTAGTGATCGACGGAACCATCCCTTCGTACTCATTGGA 726
|||||| || || || || |||| || |||| |||| ||||| |||||||| | ||
Sbjct 645 GGAAGACGAGGAGATTGTGAAATCCGTTATCGGCGGAGTGATCCCATCGTACTCGCTCGA 704
Query 727 GA-CGAAACTCGGAGATTGTAAAAGAGCAGCAG-CGATTAGAAGAGAAGCGGTT-CAGAG 783
| | ||||| ||||| |||||||| || | ||||| | | || || ||| ||||
Sbjct 705 -ATCTCGTCTCGGTGATTGCAAAAGAGCGGC-GTCGATTCGGCGGGAGGC-GTTGCAGA- 760
Query 784 GA-TAACCGGTAAATC-CT-TAACCGGTCTT-CCATTGGAAGG-TTTCGATTA-CAATTC 837
|| | ||||| | ||| | || || || || ||||| || ||| ||||| || ||
Sbjct 761 GAGTCACCGGGAGATCGATGGAA--GG-ATTACCGTTGGATGGATTT-GATTATGAA-TC 815
Query 838 AATTTTGGGGCAATGCTGTGAGATGCCAGTTGGGTATGTTCAGATCCCAGTGGGGATTGC 897
|||||||||||||||||||||||||| || || ||| ||||||| || |||||||||||
Sbjct 816 GATTTTGGGGCAATGCTGTGAGATGCCTGTCGGATATATTCAGATTCCTGTGGGGATTGC 875
Query 898 AGGACCTTTGTTGCTTGATGGGGT-TGAGTATTCAGTGCCAATGGCTACAACAGAAGGTT 956
||||| |||||||||||| || | |||||| || || || ||||||||||| |||||||
Sbjct 876 TGGACCATTGTTGCTTGAT-GGTTATGAGTACTCTGTTCCTATGGCTACAACCGAAGGTT 934
Query 957 GTTTGGTTGCTAGTACCAATAGAGGTTTTAAAGCTATACACT-TGTCTGGTGGTGCTTTT 1015
||||||||||||| || || ||||| | ||||| || | | | || ||||| ||
Sbjct 935 GTTTGGTTGCTAGCACTAACAGAGGCTGCAAAGCCATGTA-TATCTCCGGTGGAGCCACC 993
Query 1016 AGT---GTTCTTGTGAAAGATGCCATGACTAGAGCTCCAGTTGTTAGATTCCCTTCTGCA 1072
||| |||| | | || || | ||||| |||| || || ||| | ||| |||| ||
Sbjct 994 AGTACGGTTC-T-T-AAGGACGGTATGACCCGAGCACCTGTCGTTCGGTTCGCTTCGGCG 1050
Query 1073 AGAAGAGCTGCTCTTG-TCATGTTTTATCTTCAAG-ATCCTTCTAA-TTTCGAGAGATTG 1129
||| ||||| | | | | | ||||| |||| || |||| || ||| || | |||
Sbjct 1051 AGACGAGCTTC-CGAGCTTAAGTTTT-TCTTGGAGAATCCAGAGAACTTT-GATACTTTG 1107
Query 1130 TCTCTCA-TTTTCAACAAATCGAGTAGATTTGCTAGGCTT-CAGAGTATTACATGCACGA 1187
| | | | ||||||| ||||||||||| || | | || || ||| | | |||||| |
Sbjct 1108 ACAGT-AGTCTTCAACAGGTCGAGTAGATTCGC-AAGATTGCAAAGTGTGAAATGCACAA 1165
Query 1188 TTGCTGGGAGGAAT-CTGTATCCGAGGTT-TGCGTGTAGTACTGGTGATGCTATGGGGAT 1245
| || |||| |||| || ||| ||||| || ||||||||||||||||||||||||||
Sbjct 1166 TCGCGGGGAAGAATGCT-TATGTAAGGTTCTG-TTGTAGTACTGGTGATGCTATGGGGAT 1223
Query 1246 GAACATGGTCTCAAAAGGTGTTCAGAATGT-CTTGGACTTTGTAAA-GAGCGAGTTTCCT 1303
||| ||||| || |||||||| |||||||| || | | | | | | || || |||||
Sbjct 1224 GAATATGGTATCTAAAGGTGTGCAGAATGTTCTCGAA-TATCTTACCGAT-GATTTTCCC 1281
Query 1304 GACATGGATGTTATTGGCATCTCTGGGAACTACTGTTCGGACAAGAAGGCTTCGGCTGTA 1363
||||||||||| ||||| |||||||| || | |||||||||||||| || | |||||
Sbjct 1282 GACATGGATGTGATTGGAATCTCTGGTAATTTTTGTTCGGACAAGAAACCTGCTGCTGTG 1341
Query 1364 AACTGGATCGAAGGACGTGGTAAG-CATGTTGTATGTGAAGCTTTTATTAA-GGCTGAGA 1421
|||||||| || |||||||| || || ||||| ||||| ||| | || || || ||||
Sbjct 1342 AACTGGATTGAGGGACGTGGCAAATCA-GTTGTTTGTGAGGCTGTAATCAAAGGA-GAGA 1399
Query 1422 TTGTGGAGAAAGTGTTGAAGACTAGCGTTGAGGCTCTTG-TAGAGCTTAACACGCTCAAG 1480
| ||| | || || || || || ||||| | ||| ||| | ||||| || | |||||||
Sbjct 1400 TCGTGAACAAGGTCTTAAAAACGAGCGTGGCTGCT-TTGGTCGAGCTCAATATGCTCAAG 1458
Query 1481 AATCTTGTTGGTTCAGCCATGGCGGGTTCTCTTGGTGGGTTCAATGCTCATTCAAGCAAT 1540
||||||| || || || | || || ||||| ||||||||||| |||||| | || ||
Sbjct 1459 AATCTTGCGGGCTCTGCTGTTGCAGGCTCTCTAGGTGGGTTCAACGCTCATGCCAGTAAC 1518
Query 1541 ATTGTCAGC-GCTGTGTTCATCGCCACTGGCCAAGACCCAGCTCAAAACGTGGAGAGCTC 1599
|| ||| | ||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 1519 ATAGTCT-CTGCTGTGTTCATAGCTACTGGCCAAGATCCAGCTCAAAACGTGGAGAGCTC 1577
Query 1600 ACACTGTATGACCATGATT----CT-TCC-CGATGGTGACGACCTTCACATCTCTGTTTC 1653
|| || || |||||||| || | ||| || | || | || ||||| || |
Sbjct 1578 TCAATGCATCACCATGATGGAAGCTATTAACGACGGCAAAGATATCCATATCTCAGTCAC 1637
Query 1654 AATGCCTTGC-ATTGAGGTTGGTACTGTTGGAGGTGGGACACAACTTGCATCACAAGCAG 1712
||||| | | || ||||| || || || ||||| || ||||| |||||||| ||| |||
Sbjct 1638 TATGCCAT-CTATCGAGGTGGGGACAGTGGGAGGAGGAACACAGCTTGCATCTCAATCAG 1696
Query 1713 CTTGTTTGAATCTACTCGGTGTGAAAGGATCAAACAACGAGAAACCTGGC-TCGAACGCA 1771
| ||||| || || || || ||||||||| | | ||| ||| || || | |||| ||
Sbjct 1697 CGTGTTTAAACCTGCTGGGAGTGAAAGGAGCGAGCAAAGAGTCGCCGGGAAT-GAACTCA 1755
Query 1772 CAGCAAT-TGGCAA-GAATAGTGGCTGGTTCGGTTCTT-GCAGGAGAGCTT-TCACTAAT 1827
|| | | || | || ||||||| || | ||| || || |||||| || || |||||
Sbjct 1756 -AGGAGGCTAGCGACGA-TAGTGGCCGGAGCAGTT-TTAGCGGGAGAG-TTATCTCTAAT 1811
Query 1828 GTCTGCTATTGCAGCTGGACAGCTTGTGAAGA-GTCACATGAAATACAACAGATCCAGCA 1886
||| || |||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1812 GTCAGCAATTGCAGCTGGACAGCTTGTGA-GAAGTCACATGAAATACAACAGATCCAGCC 1870
Query 1887 GAGACAT 1893
|||||||
Sbjct 1871 GAGACAT 1877
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80560868175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5