BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17380.1
Length=764
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480622 jgi|Araly1|480622|fgenesh2_kg.3__3323__AT2G17380.1 907 0.0
Ahg888528 jgi|Araly1|888528|Al_scaffold_0007_514 145 6e-34
> Ahg480622 jgi|Araly1|480622|fgenesh2_kg.3__3323__AT2G17380.1
Length=674
Score = 907 bits (491), Expect = 0.0
Identities = 585/627 (93%), Gaps = 19/627 (3%)
Strand=Plus/Plus
Query 29 ACAGAAGAATACTTTCCACGATCATCAGCTTCTGGAGATCTCTTCTGGGAATCGAGCTTC 88
||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACAGAAGGATTCTTTCGACGATCATCAGCTTCTGGAGATCTCTTCTGGGAATCGAGCTT- 59
Query 89 ACTGTTAAAGATTTTCCTTCAATCGGCTAAAAATGATACATTTCGTGTTACTAGTCAGTC 148
| | | | |||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 60 -C-GCT---G-------TTCAATCGGCTAAAAATGATACATTTCGTGCTACTAGTTAGTC 107
Query 149 GACAAGGGAAAGTAAGGCTCACCAAGTGGTATTCGCCGTATACGCAGAAGGAAAGATCTA 208
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 108 GACAAGGGAAAGTAAGGCTCACCAAGTGGTATTCGCCTTATACACAGAAGGAAAGATCTA 167
Query 209 AGGTCATACGTGAACTCAGTGGAGTGATTCTGAACCGAGGTCCCAAGCTCTGCAATTTTA 268
|||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 168 AGGTCATACGCGAACTCAGCGGCGTGATTCTGAACCGAGGTCCCAAGCTCTGCAATTTTA 227
Query 269 TTGAATGGAGAGGATACAAGGTTGTCTACAAAAGATATGCAAGCTTGTACTTCTGCATGT 328
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 228 TTGAATGGAGAGGATACAAGGTTGTCTACAAAAGATATGCAAGCTTGTATTTCTGCATGT 287
Query 329 GCATTGATGAGGCGGATAACGAGTTAGAGGTACTGGAGATAATTCATCACTACGTCGAGA 388
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 288 GCATTGATGAGGCGGATAACGAGCTAGAGGTACTGGAGATAATTCATCACTACGTCGAGA 347
Query 389 TTCTTGACCGCTACTTTGGCAGTGTGTGTGAACTCGATTTGATTTTTAACTTCCACAAGG 448
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 TACTTGACCGTTACTTTGGCAGTGTGTGTGAACTCGATTTGATTTTTAACTTCCACAAGG 407
Query 449 CGTATTATATACTCGATGAGCTGTTGATCGCCGGAGAACTTCAAGAGTCAAGCAAGAAAA 508
||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 408 CGTATTATATACTCGATGAGCTGTTGATCGCTGGTGAACTTCAAGAGTCGAGCAAGAAAA 467
Query 509 CAGTTGCAAGGATAATATCAGCCCAGGATCAATTGGTGGAAGTTGCGAAAGAGGAGGCGA 568
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 468 CAGTTGCAAGGATAATATCAGCCCAGGATCAATTGGTGGAAGCTGCGAAAGAGGAGGCGA 527
Query 569 GTTCCATAAGTAATATAATTGCTCAGGCTACCAAGTAG--TC-CTTTTCTGAACTTTTCT 625
|||||||||||||||||||||||||||||||||||||| || |||| |||| |||| ||
Sbjct 528 GTTCCATAAGTAATATAATTGCTCAGGCTACCAAGTAGAGTCTCTTT-CTGATCTTTACT 586
Query 626 TATGCAGCTGAAA-CAATCGTAAATGA 651
|| ||| || ||| |||||||||||||
Sbjct 587 TACGCA-CTTAAAACAATCGTAAATGA 612
> Ahg888528 jgi|Araly1|888528|Al_scaffold_0007_514
Length=429
Score = 145 bits (78), Expect = 6e-34
Identities = 106/120 (88%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 487 CTTCAAGAGTCAAGCAAGAAAACAGTTGCAAGGATAATATCAGCCCAGGATCAATTGGTG 546
||||||||||||||||||||||||||||| ||||| ||||| || ||||||||| |||||
Sbjct 310 CTTCAAGAGTCAAGCAAGAAAACAGTTGCCAGGATTATATCCGCTCAGGATCAACTGGTG 369
Query 547 GAAGTTGCGAAAGAGGAGGCGAGTTCCATAAGTAATATAATTGCTCAGGCTACCAAGTAG 606
|| ||||| ||||||||| | | ||| |||||||| ||||| ||||||||||| ||||||
Sbjct 370 GAGGTTGCAAAAGAGGAGACCACTTCGATAAGTAACATAATCGCTCAGGCTACTAAGTAG 429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28172835663
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5