BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17410.1
Length=2819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480624 jgi|Araly1|480624|fgenesh2_kg.3__3325__AT2G17410.1 3893 0.0
> Ahg480624 jgi|Araly1|480624|fgenesh2_kg.3__3325__AT2G17410.1
Length=2772
Score = 3893 bits (2108), Expect = 0.0
Identities = 2539/2742 (93%), Gaps = 49/2742 (2%)
Strand=Plus/Plus
Query 105 CGTCGTCTCCCTATCTACTGCTTCTTCTTCGTT-TTCGTCTTCTTTATCA-AGGAATGCT 162
|||||||||| | || ||| |||||||||| || ||| | ||| | | |||||||||
Sbjct 42 CGTCGTCTCCTTTTCCACTTCTTCTTCTTC-TTCTTCACCAAGTTTGT-ATAGGAATGCT 99
Query 163 GTTTAATTGGAATCAACAATGGAGAATTTGACGGAAATAGAATCAACGATGGAGAGTTTA 222
|||||| ||||||||||||| ||||||||||||||||| |||||||||||||||| ||||
Sbjct 100 GTTTAAATGGAATCAACAATTGAGAATTTGACGGAAATGGAATCAACGATGGAGAATTTA 159
Query 223 ACGGAAATGGAGAGTGAGAGAGTTGAACAGGGTACCGATAAGGAAATTGGAAGTGGAGAG 282
|||||||||||||||||||||||||||||||| || ||| ||||| ||| ||||||||||
Sbjct 160 ACGGAAATGGAGAGTGAGAGAGTTGAACAGGGCACTGATCAGGAATTTGAAAGTGGAGAG 219
Query 283 AAAAGGCAGGATGATGTAAAGGAAACGGAGAATGAGAATTCTGGAGAGAGAGTAGGAGAG 342
|||||||||||||||||||||||||||||||||||| | | ||||||| ||||||||||
Sbjct 220 CAAAGGCAGGATGATGTAAAGGAAACGGAGAATGAGAGTCCAGGAGAGACAGTAGGAGAG 279
Query 343 GAAGCTCCTGTCAGGGAACATGAAGATTCTCCATGTCTCATTGTTATTGAAGAAGGTACT 402
|||||||||| |||||||||||||||||||||||||| ||| || |||||||||||||||
Sbjct 280 GAAGCTCCTGGCAGGGAACATGAAGATTCTCCATGTCCCATGGTCATTGAAGAAGGTACT 339
Query 403 TCCCTAGCTTCCCTTGAGGAGGTGACCAATGCTGATGATCTGCCGAAGA-T--T---G-- 454
|| || ||||||||||||| || || |||||| |||||||||||||||| | | |
Sbjct 340 TCTCTTGCTTCCCTTGAGGGGGGGAACAATGCCGATGATCTGCCGAAGATTGATGAGGAA 399
Query 455 A----TGATGAGAAGAATTCCCAATTTGAAACAAGCCCGCATCCAAGTC-CTTCTCCTTC 509
| ||||||||||||||||||||| |||||||||||||||||||| | ||||||||||
Sbjct 400 ACCCTTGATGAGAAGAATTCCCAATTAGAAACAAGCCCGCATCCAAG-CTCTTCTCCTTC 458
Query 510 AGTAGCTTTAGACACTGAAGAAGGGTTAATCAACCCTACTGCAGAAGACACTGTAGAAGA 569
|||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||| |
Sbjct 459 AGTAGCTTTAGACACTGACGAAGGGTTTATCAACCCTACTGTGGAAGACACTGTAGAACA 518
Query 570 GAACATAGTGTCTAGCGAAGTAAGTTCGGATATCTTGAAAGATGACGGAGATGCCGTCGA 629
||||| || ||||| |||| ||||||||||||||||||||||||||||||||| ||| |
Sbjct 519 GAACACAGGGTCTACCGAATTAAGTTCGGATATCTTGAAAGATGACGGAGATGATGTCAA 578
Query 630 GGTTGACAGAGATACTGCAGAAGTCCAGGAAGAAACGGCCAACA-TACCTGAATCCAAAC 688
|||||||||| ||||||||| |||||| |||||||||||||| | ||||||| | |||||
Sbjct 579 GGTTGACAGATATACTGCAGTAGTCCATGAAGAAACGGCCAA-AGTACCTGACTTCAAAC 637
Query 689 TCTC---GGAGGACACAGGATCACCTCATCATCATGCTGATATTCTGATGGTGCAGGAAA 745
|||| |||||| ||||||||||| |||||||||||||||||| |||||| ||||||||
Sbjct 638 TCTCGGAGGAGGAAACAGGATCACCGCATCATCATGCTGATATTGTGATGGAGCAGGAAA 697
Query 746 AAGCTGCAGAAGAACATGACATGATAGCCTCTGGAGACCATGAAGAATTTCCAGTCAATC 805
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 698 AAGCTGCAGAAGAACATGACATGATAGCCTCAGGAGACCATGACGAATTTCCAGTCAATC 757
Query 806 CTGATAACAAACACTCTGAAG-AAAATCAGTCACCACATCATCATGCTAATAATGTGATG 864
|||||||||||||||| |||| |||| | || ||||||||| |||||| |||||||
Sbjct 758 CTGATAACAAACACTCGGAAGAAAAAGGA-ACATTGCATCATCATACTAATACTGTGATG 816
Query 865 GAGCAGGACCAAGCTGCAGAAGAACGTGAGATCATATCCCCAGGAGAACATA-AGGAAAT 923
||||||||||||||||||||||||| ||||||||||||| ||||||| || | | ||| |
Sbjct 817 GAGCAGGACCAAGCTGCAGAAGAACATGAGATCATATCCTCAGGAGACCA-AGATGAATT 875
Query 924 TCCAGCCAATCCTGATACTAAAGTTGTTGAGGAGAACAATGACAGGATAGATGAGGGTGA 983
|||||| ||| ||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 876 TCCAGCGAATTCTGATACCAAAGTTGTTGAGGAGAACAATGACAGTATGGATGAGGGTGA 935
Query 984 GGCTAACAATTTGAATTTGGCTGGCGATGGAAGTGGAG-CAGTCGATCATGATTAC-T-T 1040
|||||||||| ||||||||||||||||||||||||| | ||| ||||||||| | | |
Sbjct 936 GGCTAACAATATGAATTTGGCTGGCGATGGAAGTGG-GCCAGACGATCATGA-T-CGTGG 992
Query 1041 GACCAAAACGGAGCTGGACAAAGTGCTAGAGGTGCCTGGTTCTGAGACCATATCAAAACT 1100
||||| ||| ||||| ||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 993 GACCATAACAGAGCTTGACAAAGGGCTAGAGGTGCCTGGTTCTGAGACCATATCAGAACT 1052
Query 1101 GGAGGATAGGCCATCTGAGCATCTCTCAGAAACCTCAATGAACGTGGAAAAAGAACTAGA 1160
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1053 GGAGGATAAGCCATCTGAGCCTCTCTCAGAAACCTCAATGAACGTGGAAAAAGAACTAGA 1112
Query 1161 AATGCCTGCCGTTGAAATTTTGCCAGACAATGACAAAAACTCTGATGTGTTGGCAGTTGG 1220
||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1113 CATGCCTGCCACAGAAAATTTGACAGACAATGACAAAAACTCTGATGTGTTGGCAGTTGG 1172
Query 1221 AGTTTCTGGAGACAGTGACAATGTGG-TATCTGTCTTGCCCGCTTCCCAAACTTCCTCTG 1279
|||||| || ||||||||||| | || ||||||||||||||||| ||||||||| |||||
Sbjct 1173 AGTTTCAGGCGACAGTGACAAAG-GGTTATCTGTCTTGCCCGCTACCCAAACTTTCTCTG 1231
Query 1280 ATCGTGATGAAGGAATGATTACAGTTGATGCTGAACCTACGGAAGACATGAAACTTGATG 1339
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 ATCATGATGAAGGAATGACTACAGTTGATGCTGAACCTACGGAAGACATGAAACTTGATG 1291
Query 1340 TTCCAGATTCTAAATTGGTTACTGATACTACTGTTGACTCTACTAATAACAAGGATGCCC 1399
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1292 TTCCAGATTCTAAATTGGTTGCTGATACTACTTTTGACTCTACTAATAACAAGGATGCCA 1351
Query 1400 ATGTTGAGGCTAATACTGAAAGGCAAGATAATTCTAGTGCACTTGTGCTAAATGATGCAA 1459
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1352 ATGTTGAGGCTAATACTGAAAAGCAAGATAATTCTAGTGCACTTGTGCTAAATGATGCAA 1411
Query 1460 ATAATGAAAGTGCACCAGTGAAACGTGTAC-CTGG---TCCTTATGTTGCATCTTCCAAT 1515
||||||||||||||||||||| ||||| || | || ||||| |||||| ||||| | |
Sbjct 1412 ATAATGAAAGTGCACCAGTGAGACGTGAACAC-GGTCCTCCTTGTGTTGCTTCTTCTATT 1470
Query 1516 ATAAAGTCTGAAGCGCGGGGTAGTGGAGATTTGAACAATGGAGTACATAAAATAGTTCGG 1575
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1471 ATAAAGTCTGAAGCGCGGGGTAGTGGAGATTTGAACAATGGAGTCCATAAAATAGTTCGG 1530
Query 1576 ACCCCACCTGTCTTTGATGGGACCATGCGCGCAAAGCGCTCTTTCCTCTTGGATGATGCG 1635
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1531 ACACCACCTGTCTTTGATGGGACCATGCGCGCAAAGCGCTCTTTCCTCTTGGATGATGCG 1590
Query 1636 TCTGATGGTAATGAATCTGGAACGGAAGAGGATCAATCTGCTTTTATGAAAGAATTGGAT 1695
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1591 TCTGACGGTAATGAATCTGGAACGGAAGAGGACCAATCTGCTTTTATGAAAGAATTGGAT 1650
Query 1696 AGtttttttAGAGAGCGAAACATGGATTTCAAACCTCCAAAATTTTACGGGGAGGGACTG 1755
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1651 AGTTTTTTTAGAGAGCGAAACATGGATTTCAAACCTCCAAAATTTTATGGGGAGGGACTG 1710
Query 1756 AACTGCCTCAAGTTGTGGAGAGCTGTAACTAGATTGGGCGGATATGACAAGGTTACTGGA 1815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1711 AACTGCCTCAAGTTGTGGAGAGCTGTAACTAGATTGGGCGGATATGACAAGGTTACTGGA 1770
Query 1816 AGCAAATTATGGCGGCAAGTGGGAGAGTCTTTCAGGCCCCCAAAGACATGTACAACAGTA 1875
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1771 AGCAAATTATGGCGGCAAGTGGGAGAATCTTTCAGGCCCCCAAAGACATGTACAACAGTA 1830
Query 1876 TCATGGACTTTCCGAGGTTTCTACGAAAAGGCTCTTCTTGAATATGAGCGGCATAAAGTT 1935
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1831 TCATGGACTTTCCGAGGTTTCTATGAAAAGGCTCTTCTTGAATATGAGCGGCATAAAGTT 1890
Query 1936 AGTGAAGGTGAACTTCAGATACCCCTTCCGTTGGAACTAGAACCGATGAATATTGATAAT 1995
|||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1891 AGTGGAGGTGAACTTCAGATACCCCTTCCGTTGGAACTAGAACCAATGAACATTGATAAT 1950
Query 1996 CAGGCGTCTGGATCAGGGAGAGCAAGGAGAGATGCAGCATCACGTGCTATGCAAGGTTGG 2055
|||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||
Sbjct 1951 CAGGCGTCTGGATCAGGGAGGGCTAGGAGAGATGCAGCAGCACGTGCTATGCAAGGTTGG 2010
Query 2056 CATTCACAGCGTCTTAATGGTAACGGTGAAGTTAGTGACCCTGCAATCAAGGATAAGAAC 2115
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 2011 CATTCACAGCGTCTTAATGGTAACGGTGAAGTTAGTGACTCTGTAATCAAGGATAAGAAC 2070
Query 2116 TTAGTTCTTCATCAAAAGCGCGAAAAACAGATTGGAACCACCCCTGGTTTGCTCAAACGT 2175
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2071 TTAGTTATTCATCAAAAGCGCGAAAAACAGATTGGAACCACCCCTGGTTTGCTCAAACGC 2130
Query 2176 AAGAGGGCTGCTGAACATGGTGCAAAAAATGCCATCCATGTATCTAAATCTATGTTGGAT 2235
|||||| ||||||||||||||||||||||| ||||||| ||||||||| |||||||||||
Sbjct 2131 AAGAGGCCTGCTGAACATGGTGCAAAAAATACCATCCAAGTATCTAAACCTATGTTGGAT 2190
Query 2236 GTGACTGTTGTTGATGTTGGACCACCAGCTGACTGGGTGAAGATTAACGTACAGAGAACG 2295
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 2191 GTGACAGTTGTTGATGTTGGACCACCAGCTGACTGGGTCAAGATTAACGTACAGAGGACG 2250
Query 2296 CAAGATTGCTTTGAGGTGTATGCATTAGTCCCAGGATTAGTCCGTGAAGAGGTCCGAGTC 2355
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2251 CAAGATTGCTTTGAGGTGTATGCATTAGTCCCAGGACTAGTCCGTGAAGAGGTCCGAGTC 2310
Query 2356 CAATCAGATCCGGCTGGGCGGTTAGTAATAAGTGGCGAACCCGAGAACCCTATGAATCCT 2415
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2311 CAATCAGATCCGGCTGGGCGGTTGGTAATAAGTGGCGAACCCGAGAACCCTATGAATCCC 2370
Query 2416 TGGGGAGCTACTCCTTTCAAAAAGGTGGTAAGTTTACCAACGAGAATCGATCCGCATCAC 2475
|||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 2371 TGGGGAGCGACTCCTTTCAAAAAGGTGGTAAGTTTGCCGACGAGAATCGATCCGCATCAC 2430
Query 2476 ACATCGGCTGTGGTAACCCTAAACGGGCAGTTATTTGTTCGTGTGCCTCTGGAGCAATTG 2535
|||||||||||||||||||| |||||||||||||| || ||||||||||| |||||||||
Sbjct 2431 ACATCGGCTGTGGTAACCCTTAACGGGCAGTTATTCGTCCGTGTGCCTCTCGAGCAATTG 2490
Query 2536 GAGTAGAAACATTTACAGTTTAACAAA-GCCTT-TGAAGATCTGAAAGAGAGAAGATTGT 2593
|| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 2491 GATTAGAAACATTTACAGTTTAACAAAAGCCTTATGAAGATCTGAAAGAGAGAAGATTGT 2550
Query 2594 TAGAAGTAGTTGTTGAGAGTATTTTGTTTGTATATTATGAGAG-ATTAAGCACAACATGA 2652
||||||||||||||||||||||||||| |||||||| |||||| || || |||||| |||
Sbjct 2551 TAGAAGTAGTTGTTGAGAGTATTTTGTCTGTATATTCTGAGAGCATAAA-CACAACCTGA 2609
Query 2653 GAAGAGC--C-TTTAGGAATCCTTAATTAGGCCATCTAGTTTTTATTGTCTCTCCTCTCT 2709
||||||| | |||||||||||||||||||| |||||||||| ||| |||||||||||||
Sbjct 2610 GAAGAGCAGCCTTTAGGAATCCTTAATTAGGTCATCTAGTTTCTATGGTCTCTCCTCTCT 2669
Query 2710 TTGATTAGATTCTTCTTCTAAGTGTCATCACTATTGATTTGTTGTAGCACCAAACTTCTT 2769
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 2670 TTGATTAGATTCTTCTTCTAAGTGTCATCACTATTGATTTGTTGTAGCACCAAAAT-CTT 2728
Query 2770 T-AAACCTTTCTATTAAGAACACACAAATCTACAACCttttt 2810
| |||||||| |||||||||||||||||||||||||||||||
Sbjct 2729 TTAAACCTTTTTATTAAGAACACACAAATCTACAACCTTTTT 2770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106386054285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5