BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17430.1
Length=1711
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480627 jgi|Araly1|480627|fgenesh2_kg.3__3328__AT2G17430.1 2623 0.0
> Ahg480627 jgi|Araly1|480627|fgenesh2_kg.3__3328__AT2G17430.1
Length=1680
Score = 2623 bits (1420), Expect = 0.0
Identities = 1600/1688 (95%), Gaps = 8/1688 (0%)
Strand=Plus/Plus
Query 1 ATGATCACAAGAAGCAGGTGTCGAAGATCTTTGTTATGGTTTCTAGTGTTCCATGGCGGA 60
||||||| ||||||||||||||||||||| |||||||| ||| | |||||||| ||||||
Sbjct 1 ATGATCAAAAGAAGCAGGTGTCGAAGATCGTTGTTATGTTTTTTGGTGTTCCACGGCGGA 60
Query 61 GCTACAGCCACCGGAGCTCCCTCTGGTGGGAAAGAGCTTTCTCAGACGCCTACTTGGGCA 120
|||||||| ||||||||||||||||| |||||| |||| ||||||||||| ||||||||
Sbjct 61 GCTACAGCTACCGGAGCTCCCTCTGGCGGGAAACAGCTCTCTCAGACGCCCACTTGGGCG 120
Query 121 GTCGCCGTCGTCTGCACCTTTCTCATCCTCATTTCCCATCTCCTTGAAAAGGGTCTTCAA 180
|||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 121 GTCGCCGTAGTCTGCACCTTCCTCATCCTAATTTCCCATCTCCTTGAAAAGGGTCTTCAA 180
Query 181 AGACTCGCCAACTGGCTATGGAAGAAGCATAAAAACTCTCTCCTTGAAGCCTTAGAGAAA 240
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGACTCGCTGACTGGCTATGGAAGAAGCATAAAAACTCTCTCCTTGAAGCCTTAGAGAAA 240
Query 241 ATCAAAGCTGAGCTGATGATCCTTGGATTCATTTCTTTATTACTCACTTTTGGAGAACCA 300
|| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 241 ATTAAAGCTGAGCTGATGATCATTGGATTCATTTCTTTATTACTCACTTTTAGAGAAACA 300
Query 301 TATATTCTCAAGATCTGTGTTCCTCGAAAAGCTGCTCTCTCTATGTTACCTTGTTTATCT 360
|||||| | |||||||||||| ||||||| |||| |||||||||||||||||||| || |
Sbjct 301 TATATTATGAAGATCTGTGTTTCTCGAAAGGCTGATCTCTCTATGTTACCTTGTTCATTT 360
Query 361 GAAGACACAGTGCTTTTCCAGAAACTTGCTCCATCATCTCTTAGCAGGCATCTTTTGGCT 420
|||||||||| ||||||||||||||||||| | ||||||||||||| |||||||| |||
Sbjct 361 GAAGACACAGAGCTTTTCCAGAAACTTGCT-C--CATCTCTTAGCAGACATCTTTTAGCT 417
Query 421 GCTGGTGATACATCTATTAATTGCAAACAAGGATCTGAGCCACTCATAACATTGAAAGGC 480
|||||||||| |||| | |||||||||||||||||||||||||| |||||||||||||||
Sbjct 418 GCTGGTGATATATCTGTGAATTGCAAACAAGGATCTGAGCCACTTATAACATTGAAAGGC 477
Query 481 TTGCACCAACTTCACATCTTGTTGTTCTTCTTGGCCATCTTTCATATCGTATATAGTTTA 540
||||||||||||||||||||||||||||||||||| | |||||| || | |||||||||
Sbjct 478 TTGCACCAACTTCACATCTTGTTGTTCTTCTTGGCGGTTTTTCATGTCCTCTATAGTTTA 537
Query 541 ATCACCATGATGCTTAGCAGGCTCAAGATTCGTGGATGGAAAAAGTGGGAGCAAGAGACA 600
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 538 ATCACTATGATGCTTAGCAGGCTCAAGATACGTGGATGGAAAAAGTGGGAGCAAGAGACA 597
Query 601 TTATCTAATGACTATGAGTTTTCTATTGATCATTCAAGACTTAGGCTCACTCATGAGACT 660
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTATCTCATGACTATGAGTTTTCTATTGATCATTCAAGACTTAGGCTCACTCATGAGACT 657
Query 661 TCTTTTGTGAGAGAACATACAAGTTTCTGGACAACAACTCCTTTCTTCTTTTACGTCGGA 720
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 658 TCTTTTGTGAGAGAACATACAAGTTTCTGGACAACAATTCCTTTCTTCTTTTACGTCGGA 717
Query 721 TGCTTCTTTAGGCAGTTCTTTGTATCTGTTGAAAGAACCGACTACTTGACTCTGCGCCAT 780
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 718 TGCTTCTTTAGGCAGTTCTTTGTATCCGTGGAAAGAACCGACTACTTGACTCTGCGCCAC 777
Query 781 GGATTCATCTCTGCCCATTTAGCTCCAGGAAGAAAGTTCAACTTCCAGAGATATATCAAA 840
||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 778 GGATTCATCTCTGCCCATTTAGCCCCGGGAAGAAAATTCAACTTCCAGAGATATATCAAA 837
Query 841 AGATCTCTCGAGGATGATTTCAAGTTGGTAGTTGGAATAAGTCCAGTTCTTTGGGCATCA 900
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 838 AGATCACTCGAGGATGATTTCAAGTTGGTAGTAGGAATAAGTCCAGTTCTTTGGGCATCA 897
Query 901 TTTGTAATCTTCTTGCTGTTCAATGTTAATGGCTGGAGAACATTGTTTTGGGCATCGATA 960
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 898 TTTGTGATCTTCTTGCTGTTTAATGTTAATGGCTGGAGAACATTGTTTTGGGCATCGATA 957
Query 961 CCTCCTCTACTCATAATCCTAGCTGTTGGAACAAAGCTTCAAGCAATTATGGCAACAATG 1020
||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 958 CCTCCCCTGCTCATAATCCTAGCTGTTGGCACAAAGCTTCAAGCGATTATGGCAACAATG 1017
Query 1021 GCGCTAGAAATCGTAGAGACACATGCAGTAGTTCAGGGGATGCCTTTAGTGCAAGGTTCA 1080
||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||
Sbjct 1018 GCGCTAGAAATCGTAGAGACACATGCAATAGTTCAAGGGATGCCTCTAGTGCAAGGTTCA 1077
Query 1081 GATCGATACTTTTGGTTCGACTGTCCTCAACTACTTCTTCATCTTATCCACTTTGCCTTG 1140
|||| ||||||||||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct 1078 GATCAATACTTTTGGTTCGATTGTCCTCAATTGCTTCTTCATCTTATCCACTTTGCCTTG 1137
Query 1141 TTTCAGAATGCTTTCCAGATAACACACTTCTTCTGGATATGGTATTCTTTTGGATTAAAA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TTTCAGAATGCTTTCCAGATAACACACTTCTTCTGGATATGGTATTCTTTTGGATTAAAA 1197
Query 1201 TCATGCTTCCATAAAGATTTCAATCTTGTAGTCAGCAAACTCTTTCTATGCCTAGGAGCT 1260
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1198 TCATGCTTCCATAAAGATTTCAATCTTGTAGTCATCAAACTCTTTCTATGCCTAGGAGCT 1257
Query 1261 TTGATCTTATGCAGCTACATCACTCTCCCATTGTACGCCCTCGTTACTCAGATGGGTTCA 1320
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1258 TTAATCTTATGCAGCTACATCACTCTCCCGTTGTACGCCCTAGTTACTCAGATGGGTTCA 1317
Query 1321 CACATGAAGAAAGCAGTGTTTGATGAGCAAATGGCAAAGGCATTGAAGAAGTGGCACAAA 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CACATGAAGAAAGCAGTGTTTGATGAGCAAATGGCAAAGGCATTGAAGAAGTGGCACAAA 1377
Query 1381 GACATCAAATTGAAGAAAGGTAAAGCGAGGAAGCTCCCGAGCAAGACACTTGGTGTTTCA 1440
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GACATCAAACTGAAGAAAGGCAAAGCGAGGAAGCTCCCGAGCAAGACACTTGGTGTTTCA 1437
Query 1441 GAGAGTTTCAGCCTCTCTTCCTCTTCCTCTGCAACCACTCTTCACCGTTCCAAGACCACT 1500
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1438 GAGAGTTTCAGCCTCTCTTCCTCTTCCTCCGCAACTACTCTTCACCGTTCCAAGACCACT 1497
Query 1501 GGTCACTCTTCTAACATCATATACTACAAACAAGAAGATGAAGAAGACGAAATGTCTGAT 1560
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 GGTCACTCTTCTAACATGATATACTACAAACAAGAAGATGAAGAAGACGAAATGTCTGAT 1557
Query 1561 CTTGAAGCTGGAGCAGAGGATGCTATTGACAGGATTCAACAACAGGAGATGCAATTCCAC 1620
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1558 CTTGAAGCTGGAGCAGAGGATGCTATTGACAGGATTCAACAACAACAGATGGAATTCCAC 1617
Query 1621 AACTCTTAGCTGCTTTAGTTTCTTCTGTTGTTACTTCATAGTTCAAATGAAACGATGCTG 1680
||||||||||| ||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct 1618 CACTCTTAGCTG-TTT--T--CTTCTGTTGTTACTTCAAAGTTCAAATGAAACGATGCTG 1672
Query 1681 TTTACTAA 1688
||||||||
Sbjct 1673 TTTACTAA 1680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64182062825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5