BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17440.1
Length=2091
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480628 jgi|Araly1|480628|fgenesh2_kg.3__3329__AT2G17440.1 2462 0.0
Ahg888523 jgi|Araly1|888523|Al_scaffold_0007_509 767 0.0
> Ahg480628 jgi|Araly1|480628|fgenesh2_kg.3__3329__AT2G17440.1
Length=1902
Score = 2462 bits (1333), Expect = 0.0
Identities = 1680/1839 (91%), Gaps = 57/1839 (3%)
Strand=Plus/Plus
Query 40 aagaagaaaggaagtgacgaagaaagaatgagaagac---gaagaaagagaaaacaagaT 96
||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1 AAGAAGAAAAGAACTGACGAAGAAAGAATGAGAAGACGAAGAAGAAAGAGAAAACAA-A- 58
Query 97 CCGATTCAAAATATGGAAACTTGAATAtcttcttcttcttcttccttctcctttctcatc 156
| | |||| ||||||||| ||||||| || || | | ||||| | || || |
Sbjct 59 -C-AAACAAACTATGGAAACATGAATAT-TT-TT-GAC--AAT-CTTCTTC-TT-TC-T- 106
Query 157 tctcACTTTGAGGGTGAATTT-T-GATTTTGTAGAAAATGGATTCGAAGGAGATGGTTGT 214
|||| |||||| | ||| | || || | | ||||||| ||||||| ||||||
Sbjct 107 TCTC-CTTTGA---T---TTTGTAGAAAATG--G-ATTTGGATTCCAAGGAGAAGGTTGT 156
Query 215 GGAAGAAATCATGAGAATTCACAGATCTCTACCATTG-AGACCAGAGATCGACGATGTAG 273
||||||||| |||||||||||||||||||| || ||| |||||||||||||| |||||||
Sbjct 157 GGAAGAAATAATGAGAATTCACAGATCTCTTCC-TTGTAGACCAGAGATCGAAGATGTAG 215
Query 274 AAACGGCAACTTCTCTGATACAAAACGTTGAAAAGGAAGATCGGAATCGTTTAGAAGCCA 333
|||| |||||||||||||||||| |||||||||| ||||||||| |||| ||||||||||
Sbjct 216 AAACCGCAACTTCTCTGATACAAGACGTTGAAAAAGAAGATCGGGATCGCTTAGAAGCCA 275
Query 334 TTGATAAAC--TTG-TTAAAACCTCTTCCTCTGAGGTTCCTTTAGAGCTTTTCAATGTGT 390
||||||||| || || ||| | |||||||||| |||||| |||||||||||||||||
Sbjct 276 TTGATAAACAGATGATT-AAA-C-CTTCCTCTGATGTTCCTAAAGAGCTTTTCAATGTGT 332
Query 391 TCAAGGAGATGAAGAAAAGTCTTGTTCGTTTCCAGAGCACAGAACAGACAAGAGAAGCTA 450
| ||||||||||||||||||||||||| |||||| |||| |||||||| |||||||||||
Sbjct 333 TGAAGGAGATGAAGAAAAGTCTTGTTCATTTCCAAAGCAAAGAACAGAGAAGAGAAGCTA 392
Query 451 CGAAAATTCTCGATCTGGAATCTGTACACGTTGTGTTCGACGAATTGATTCAGAGAGCTT 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 CGAAAATTCTCGATCTGGAATCTGTACACGTTGTGTTCGACGAATTGATTCAGAGAGCTT 452
Query 511 CTTTTTGCATTGCTTCTCCCAACAGCACC---ACC-GCT-T-TGCCTCGGTCTGTTCCGG 564
||||||||||||||||||| ||| ||||| ||| || | ||| ||||||| ||||||
Sbjct 453 CTTTTTGCATTGCTTCTCCTAACGGCACCAGTACCACCTCTCTGCATCGGTCTCTTCCGG 512
Query 565 TACCGGCGCCGGTTGTTTCTTCTGATGAGATTCCTT-TCAAGTCAAAGGAAATTATCTCG 623
|| | ||||||||||||||| |||||||| ||| | |||||||||||||||||||||
Sbjct 513 CACAAGAACCGGTTGTTTCTTCTCATGAGATT-CTTGTGAAGTCAAAGGAAATTATCTCG 571
Query 624 CGTGACGATACGTTTGTGAAGAAAGCTAAATCTTCGTTTTATAGTGATGGGTTGTTAGCT 683
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 CGTGATGATACGTTTGTGAAGAAAGCTAAATCTTCGTTTTATAGTGATGGGTTGTTAGCT 631
Query 684 CCTAGTAAGCCCCAGGTTCTGGATTCAACACTTCATCAGGCTAAGAACGT------TGCA 737
||| |||||||||||||| ||||||||||| ||||||||||||||||||| || |
Sbjct 632 CCTTGTAAGCCCCAGGTTTTGGATTCAACATTTCATCAGGCTAAGAACGTCACAGGTGTA 691
Query 738 GGCAATGATGGGGAGAAGTTGAGTCTCATAAAACTTGCTAGTTTGATTGAGGTATCTGCC 797
||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 692 GGCCATGATGGGGAGAAGTTGAGTCTCATAAAACTTGCTAGTTTGATTGAAGTATCGGCC 751
Query 798 AAGAAAGCTACTCAAGAGCTAAATTTGCAGCACAGGCTGATGGATCAGCTCGAATGGCTT 857
||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 752 AAGAAAGCTACTCCGGAGCTAAATCTGCAGCACAAGCTGATGGATCAGCTCGAATGGCTT 811
Query 858 CCGGATTCTCTAGGCAAGTTATCGAGTCTTGTCAGGCTAGATCTGTCTGAGAATTGTATC 917
||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 812 CCGGATTCTTTAGGCAAGTTATCGAGTCTTGTTAGGCTAGATTTGTCTGAGAATTGTATT 871
Query 918 ATGGTACTACCGGCAACCATAGGAGGGCTTATT-TCTTTGACGAGGCTTGATTTGCATTC 976
|||||||||||||||||||||||||||||| || || ||||||| |||||||||||||||
Sbjct 872 ATGGTACTACCGGCAACCATAGGAGGGCTT-TTGTCCTTGACGAAGCTTGATTTGCATTC 930
Query 977 GAATAGAATTGGTCAGCTCCCTGAGTCTATAGGAGATTTGCTAAACTTGGTCAACCTGAA 1036
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 931 GAATAGAATTGCTCAGCTCCCTGAGTCTATAGGAGATTTGCTAAACTTGATCAACCTGAA 990
Query 1037 TCTTAGTGGAAACCAATTATCATCTCTTCCATC-GTCATTTAATAGATTGATACATCTTG 1095
||||||||||||||||||||||| ||||||||| | |||||| ||||||||||||||| |
Sbjct 991 TCTTAGTGGAAACCAATTATCATTTCTTCCATCAG-CATTTAGTAGATTGATACATCTCG 1049
Query 1096 AGGAACTTGATTTGAGCTCTAACAGCCTCTCTATTCTCCCTGAATCTATTGGTTCTCTCG 1155
||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||
Sbjct 1050 AGGAACTTGATTTGAGCTCTAACAGCCTCACCATTCTCCCTGAATCTATCGGTTCTCTCG 1109
Query 1156 TGAGCCTAAAGAAGCTCGATGTTGAAACAAATAACATCGAAGAGATTCCACATAGTATCT 1215
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1110 TGAGCCTAAAGAAGCTTGAGGTTGAAACAAATAACATCGAAGAGATTCCGCATAGTATCT 1169
Query 1216 CTGGCTGTTC-TTCCATGGAAGAACTCCGTGCAGATTACAACAGACTTAAAGCTCTTCCA 1274
|||||||||| |||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1170 CTGGCTGTTCTTTCC-TGAAAGAACTCCGTGCAGATTACAACCGACTTAAAGCTCTTCCA 1228
Query 1275 GAAGCTGTTGGGAAGTTATCTACCTTAGAGATTCTGACTGTCCGTTATAATAACATTCGG 1334
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1229 GAAGCTGTTGGGAAGTTATCTACCTTAGAGATTCTGACTGTCCGTTACAATAACATTCGG 1288
Query 1335 CAGCTACCCACAACAATGTCCTCCATGGCTAACCTCAAAGAGCTAGATGTGAGTTTCAAC 1394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 CAGCTACCCACAACAATGTCCTCCATGGCTAACCTCAAAGAGCTAGATGTGAGTTTCAAC 1348
Query 1395 GAGCTTGAGTCAGTACCAGAGAGTTTATGTTATGCCAAAACACTTGTTAAGCTTAACATC 1454
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 1349 GAGCTTGAGTCAGTACCAGAGAGCTTATGTTATGCCAAAACACTTGTCAAGCTGAACATT 1408
Query 1455 GGGAACAATTTTGCCAACCTAAGATCACTCCCGGGATTAATAGGCAACCTTGAGAAGCTA 1514
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1409 GGGAACAATTTTGCCAACCTGAGATCACTCCCGGGGTTAATAGGCAACCTTGAGAAGCTA 1468
Query 1515 GAAGAGCTTGATATGAGCAATAACCAGATCCGTTTCCTTCCCTACTCTTTTAAAACGCTT 1574
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1469 GAAGAGCTTGATATGAGCAATAACCAGATCCGTTTCCTTCCTTACTCTTTCAAAACGCTT 1528
Query 1575 TCAAATCTGCGTGTTCTTCAAACAGAACAAAATCCACTTGAAGAGCTTCCAAGGGATATA 1634
||| | |||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1529 TCACAGCTGCGTGTTCTTCACACAGAACAAAATCCACTTGAAGAGCTTCCAAGAGATATA 1588
Query 1635 ACCGAAAAAGGCGCACAGGCCGTGGTTCAATACATGAATGATCTTGTGGAGGCAAGAAAC 1694
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1589 ACCGAAAAGGGCGCACAGGCCGTGGTTCAATACATGAATGATCTCGTGGAGGCAAGAAAC 1648
Query 1695 ACCAAATCTCAAAGAACTAAGCCGAAAAAGAGTTGGGTTAACAGTATTTGCTTCTTCTGC 1754
|||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||
Sbjct 1649 ACCAAATCTCAAAGAACTAAGCCGAAAAAGAGCTGGTTTAACAGTAGTTGCTTCTTCTGC 1708
Query 1755 AAGTCCTCTACCAACTAGAGAAAACAGAGCAGCATGGAGATCCTCTAAACCACTCTGAAC 1814
|||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1709 AAGTCCTCCACCAACTAGAGAAAACAGAGCAGCACGAAGATCCTCTAAACCACTCTGAAC 1768
Query 1815 AAATCCGACCTTTTAATCGTCAGGCAGGACAGAAGAATC 1853
||||| |||||||||||| |||||||| |||||||||||
Sbjct 1769 AAATCTGACCTTTTAATCTTCAGGCAGAACAGAAGAATC 1807
> Ahg888523 jgi|Araly1|888523|Al_scaffold_0007_509
Length=1653
Score = 767 bits (415), Expect = 0.0
Identities = 869/1084 (80%), Gaps = 47/1084 (4%)
Strand=Plus/Plus
Query 738 GGCAATGATGGGGAGAAGTTGAGTCTCATAAAACTTGCTAGTTTGATTGAGGTATCTGCC 797
||||||||||| |||||| ||||| | ||||||||||||||||||||||||||||| ||
Sbjct 598 GGCAATGATGGAGAGAAGCTGAGTTTGATAAAACTTGCTAGTTTGATTGAGGTATCAGCT 657
Query 798 AAGAAAGCTACTCAAGAGCTAAATTTGCAGCACAGGCTGATGGATCA-GCTCGAATGGCT 856
||||||||||||| |||| ||||| | ||| ||| | | | |||||| | |||| |||||
Sbjct 658 AAGAAAGCTACTCCAGAGATAAATCTACAGAACAAGTTAACGGATCAAG-TCGAGTGGCT 716
Query 857 TCCGGATTCTCTAGGCAAGTTATCGAGTCTTGTCAG-GCTAGATCTGTCTGAGAATTGTA 915
|||||||||||| |||||||||||||| ||| | ||| ||| ||||||||||| |
Sbjct 717 TCCGGATTCTCTTGGCAAGTTATCGAG-CTTAACTTCGCTTGATTTGTCTGAGAATCACA 775
Query 916 TCATGGTACTACCGGCAAC-C-ATAGGAGGGCTTAT-TTCTTTGACGAGGCTTGATTTGC 972
| |||| | || ||| | |||||||| ||| | ||| ||||| | ||| |||||||
Sbjct 776 TTGTGGTGTTGCCA--AACACTATAGGAGGACTT-TCTTCCTTGACAAAGCTCGATTTGC 832
Query 973 ATTCGAATAGAATTGGTCAGCTCCCTGAGTCTATAGGAGATTTGCTAAACTTGGTCAACC 1032
|||| || ||||| |||||||| ||||||||||| ||||| ||| | |||||||| |||
Sbjct 833 ATTCTAACAGAATCGGTCAGCTTCCTGAGTCTATTGGAGAATTGTTGAACTTGGTTTACC 892
Query 1033 TGAATCTTAGTGGAAACCAATTATCATCT-CTTCCATC-GTCATTTAATAGATTGATAC- 1089
| |||||| || | ||||| ||||| | | || || || | | |||| |||||| | |
Sbjct 893 TTAATCTTGGTAGCAACCAGTTATCGT-TGCTGCCTTCAG-CGTTTAGCAGATTGGTGCG 950
Query 1090 ATCTTGAGGAACTTGATTTGAGCTCTAACAGCCTCTCTATTCTCCCTGAATCTATTGGTT 1149
| || ||||| ||||||||||||| ||||| |||| | |||||||||||||| || ||||
Sbjct 951 A-CTCGAGGAGCTTGATTTGAGCTGTAACAACCTCCCGATTCTCCCTGAATCGATCGGTT 1009
Query 1150 CTCTCGTGAGCCTAAAGAAGCTCGATGTTGAAACAAATAACATCGAAGAGATTCCACATA 1209
|||| ||||| |||||||||||||| ||||| |||||| | ||||||||||| ||| ||
Sbjct 1010 CTCTTGTGAGTCTAAAGAAGCTCGACGTTGAGACAAATGATATCGAAGAGATCCCATATT 1069
Query 1210 GTATCTC-TGGCTGTTCTTC-CATGGAAGAACTCCGTGCAGATTACAACAGACTTAAAGC 1267
||| | ||| |||||||| | || ||||||||||||||||||| |||| ||| || ||
Sbjct 1070 CTAT-TGGTGGATGTTCTTCTC-TGAAAGAACTCCGTGCAGATTATAACAAACTCAAGGC 1127
Query 1268 TCTTCCAGAAGCTGTTGGGAAG-TTATCTACCTTAGAGATTCT-GACTGTCCGTTATAAT 1325
|||||| |||||| |||||||| ||| |||| |||||||| || | |||||||||| |||
Sbjct 1128 TCTTCCTGAAGCTATTGGGAAGATTA-CTACATTAGAGAT-CTTGTCTGTCCGTTACAAT 1185
Query 1326 AACATTC-GGCAGCTACCCACAACAATGTCCTCCATGGCTAACCTCAAAGAGCTAGATGT 1384
||||| | ||||| |||| || || ||||| || | ||||||||||||||||| |||||
Sbjct 1186 AACAT-CAGGCAGTTACCTACGACGATGTCTTCTTTAGCTAACCTCAAAGAGCTGGATGT 1244
Query 1385 GAGTTTCAACGAGCTTGAGTCAGTACCAGAGAGTTTATGTTATGCCAAAACACTTGTTAA 1444
|||||||||||||| |||||||| ||||||||||| |||| ||||| || ||||| ||
Sbjct 1245 CAGTTTCAACGAGCTCGAGTCAGTGCCAGAGAGTTTGTGTTTTGCCACTACGCTTGTGAA 1304
Query 1445 GCTTAACATCGGGAACAATTTTGCCAACCTAAGATCACTCCCGGGATTAATAGGCAACCT 1504
||| || || || |||||||| || || | | ||| |||||| ||| ||||||||||||
Sbjct 1305 GCTGAATATTGGAAACAATTTCGCTGACATGATATCGCTCCCGAGATCAATAGGCAACCT 1364
Query 1505 TGAGAAGCTAGAAGAGCTTGATATGAGCAATAACCAGATCCGT-TTCCTTCCCT-ACTCT 1562
||||| ||| |||||||||||||| |||||||| ||||||||| ||| | || | | ||
Sbjct 1365 TGAGATGCTTGAAGAGCTTGATATAAGCAATAATCAGATCCGTGTTC-TACC-TGAATCC 1422
Query 1563 TTTAAAACGCTTTCAAA-TCTGCGTGTTCTTCAAACAGAACAAAATCCACTTGAAG-AGC 1620
|| |||| |||| |||| | ||||||| |||| | | | |||||||| ||| | |
Sbjct 1423 TTCAAAATGCTTACAAAGT-TGCGTGTGCTTCGTGCTCAGGAGAATCCACTACAAGTACC 1481
Query 1621 TTCCAAGGGATATAACCGAAAAAGGCGCACAGGCCGTGGTTCAATACATGAATGATCTTG 1680
| || | |||||| ||||||| ||| | |||||||| ||||||||||||||||||||||
Sbjct 1482 T-CCTCGTGATATAGCCGAAAAGGGCCCTCAGGCCGTTGTTCAATACATGAATGATCTTG 1540
Query 1681 TGGAGGCAAGAAACACCAAATCTCAAA-GAACTAAGCCGAAA-AAGAGTTGGGTTAACAG 1738
||||| | ||||| | ||||||| | | |||||| ||| ||||| ||||| |||
Sbjct 1541 TGGAGACGAGAAATGCGAAATCTCTATTGGT-TAAGCC-AAAGAAGAGCTGGGTC--CAG 1596
Query 1739 TATTTGCTTCTTCTGCAAGTCCTCTACCAACTAGAGAAAACAGAGCAGCATGGAGATCCT 1798
|| |||||||||| ||| ||| || || |||||||||||||||||||||||| |
Sbjct 1597 -ATGTGCTTCTTCTCCAAATCCA--AC-AA---GAGAAAACAGAGCAGCATGGAGATTGT 1649
Query 1799 CTAA 1802
||||
Sbjct 1650 CTAA 1653
Score = 148 bits (80), Expect = 1e-34
Identities = 251/328 (77%), Gaps = 34/328 (10%)
Strand=Plus/Plus
Query 216 GAAGAAATCATGAGAATTCACAGATCTCTACCATTGAGACCAGAGA-TCGACGATGTAGA 274
||||||||||||||||||||||||||||||||| ||||||| || | ||||| || ||
Sbjct 52 GAAGAAATCATGAGAATTCACAGATCTCTACCACCAAGACCAG-GAATTGACGAAGTTGA 110
Query 275 AACGGC-AACT-TCTCTGATACAAAACGTTGA-AAAGGAAGATCG-GAATCGTTTAGAAG 330
| | || || | | |||| | |||||||| |||| |||||| | | |||||||||
Sbjct 111 AGCTGCCAAGGGT-T-TGATTGACAACGTTGAGAAAG-AAGATCAAGCTT-GTTTAGAAG 166
Query 331 CCATTGATAAACTT-GTTAAAACCTCTTCCTCTGAGGTTCCTT-TAGAGCTTTTCAATG- 387
|||||| ||||| | |||| |||| || |||||| | |||||| ||| ||
Sbjct 167 CCATTGCTAAACAGAGG-AAAAGCTCT------GAAGTTCCTGGT-GAGCTTCTCA-TGG 217
Query 388 TGTT-CAAGGAGATGAAGAAAAGTCT-TGTTC-GTTTCCAGAGCACAGAACAGACAA-GA 443
|||| |||| | ||||||||| || | ||||| ||||| | || |||||||| || ||
Sbjct 218 TGTTGCAAGAA-ATGAAGAAAGGT-TATGTTCAGTTTCGT-ACCAAAGAACAGA-AACGA 273
Query 444 GAAGCTACGAAAA-TTCTCGATCTGGAATCTGTACACG-TTGTGTTCGACGAATTGATTC 501
|||||| | ||| |||||||||||||| | | |||| || ||||||| || || ||||
Sbjct 274 GAAGCTTC-AAAGCTTCTCGATCTGGAAAGTATTCACGCTT-TGTTCGATGATTTCATTC 331
Query 502 AGAGAGCTTCTTTTTGCATTGCTTCTCC 529
| ||||||||| | |||||||||||||
Sbjct 332 AAAGAGCTTCTAATCGCATTGCTTCTCC 359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78656355925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5