BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G17442.1

Length=810
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg343360 jgi|Araly1|343360|fgenesh1_pg.C_scaffold_3003123           263    2e-69


> Ahg343360 jgi|Araly1|343360|fgenesh1_pg.C_scaffold_3003123
Length=579

 Score =  263 bits (142),  Expect = 2e-69
 Identities = 169/182 (93%), Gaps = 2/182 (1%)
 Strand=Plus/Plus

Query  405  GTTGGaaa-aaaaGGAAAAGATGTTGGACGATCTAGGGAAGTTGTTTAGGGCGCCTCGAA  463
            ||| |||| |||||||||||| |||||||||||||||| |||||| |||||| |||| ||
Sbjct  399  GTT-GAAAGAAAAGGAAAAGAAGTTGGACGATCTAGGGCAGTTGTATAGGGCTCCTCAAA  457

Query  464  TGGATGTGTTGAAAGGAAAGGAAAAGAAGTTGGACTATCTAGGGCAGTTGTATAGTGCTC  523
            ||||||||||||||| |||||||| |||||||||||||||||||||| ||||||| ||||
Sbjct  458  TGGATGTGTTGAAAGAAAAGGAAACGAAGTTGGACTATCTAGGGCAGCTGTATAGGGCTC  517

Query  524  CTCGAATGGATTTGTTGAAAGAAATTAAAAACGCCGATGGACGATATGCAGGAAGAAACT  583
            ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  518  CTCGAATGGATGTGTTGAAAGAAATTAAAAACGCCGATGGACGATACGCAGGAAGAAACT  577

Query  584  AA  585
            ||
Sbjct  578  AA  579


 Score =  110 bits (59),  Expect = 2e-23
 Identities = 63/65 (97%), Gaps = 0/65 (0%)
 Strand=Plus/Plus

Query  174  GAAGAAGGGATTATTTGGGAGAGCTTTTGCGAATTCACCAATATTTGCTCTTGGATACTT  233
            |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  123  GAAGAAGGGAATATTTGGGAGAGCTTTTGCGAATGCACCAATATTTGCTCTTGGATACTT  182

Query  234  CACAA  238
            |||||
Sbjct  183  CACAA  187



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29926489845


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5