BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G17442.1 Length=810 Score E Sequences producing significant alignments: (Bits) Value Ahg343360 jgi|Araly1|343360|fgenesh1_pg.C_scaffold_3003123 263 2e-69 > Ahg343360 jgi|Araly1|343360|fgenesh1_pg.C_scaffold_3003123 Length=579 Score = 263 bits (142), Expect = 2e-69 Identities = 169/182 (93%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 405 GTTGGaaa-aaaaGGAAAAGATGTTGGACGATCTAGGGAAGTTGTTTAGGGCGCCTCGAA 463 ||| |||| |||||||||||| |||||||||||||||| |||||| |||||| |||| || Sbjct 399 GTT-GAAAGAAAAGGAAAAGAAGTTGGACGATCTAGGGCAGTTGTATAGGGCTCCTCAAA 457 Query 464 TGGATGTGTTGAAAGGAAAGGAAAAGAAGTTGGACTATCTAGGGCAGTTGTATAGTGCTC 523 ||||||||||||||| |||||||| |||||||||||||||||||||| ||||||| |||| Sbjct 458 TGGATGTGTTGAAAGAAAAGGAAACGAAGTTGGACTATCTAGGGCAGCTGTATAGGGCTC 517 Query 524 CTCGAATGGATTTGTTGAAAGAAATTAAAAACGCCGATGGACGATATGCAGGAAGAAACT 583 ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 518 CTCGAATGGATGTGTTGAAAGAAATTAAAAACGCCGATGGACGATACGCAGGAAGAAACT 577 Query 584 AA 585 || Sbjct 578 AA 579 Score = 110 bits (59), Expect = 2e-23 Identities = 63/65 (97%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 174 GAAGAAGGGATTATTTGGGAGAGCTTTTGCGAATTCACCAATATTTGCTCTTGGATACTT 233 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 123 GAAGAAGGGAATATTTGGGAGAGCTTTTGCGAATGCACCAATATTTGCTCTTGGATACTT 182 Query 234 CACAA 238 ||||| Sbjct 183 CACAA 187 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29926489845 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5