BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17450.1
Length=827
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480629 jgi|Araly1|480629|fgenesh2_kg.3__3330__AT2G17450.1 1181 0.0
> Ahg480629 jgi|Araly1|480629|fgenesh2_kg.3__3330__AT2G17450.1
Length=798
Score = 1181 bits (639), Expect = 0.0
Identities = 712/747 (95%), Gaps = 6/747 (1%)
Strand=Plus/Plus
Query 1 ATTATAACGTGGATCAAGATTCTTTCTTATCTTCATCACTCCACACATTTTCTTGTCTTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTATAACGTGGATCAAGATTCTTTCTTATCTTCATCACTCCACACATTTTCTTGTCTTC 60
Query 61 AAACTCACACAAAG-AAAG----AAAAGTCTCCAAAGCTCAAAAAGCAATGACTCGACCG 115
|||||||||||||| |||| |||| ||||||||||||||||| |||||||||||||
Sbjct 61 AAACTCACACAAAGAAAAGAAAAAAAAATCTCCAAAGCTCAAAAA-AAATGACTCGACCG 119
Query 116 TCAAGATTACTTGAGACGGCGGCGCCACCACCACAACCGTCGGAGGAGATGATCGCAGCG 175
|||||||| || |||||||||||||| ||||||||||||||| ||||||||||||||| |
Sbjct 120 TCAAGATTGCTCGAGACGGCGGCGCCGCCACCACAACCGTCGAAGGAGATGATCGCAGAG 179
Query 176 GAATCCGACATGGTGGTGATCTTGTCGGCTCTTCTTTGCGCTCTTATCTGCGTTGCTGGT 235
|||||||||||||| |||||||||||||||||||||||||||||||| || || |||||
Sbjct 180 GAATCCGACATGGTAGTGATCTTGTCGGCTCTTCTTTGCGCTCTTATATGTGTAGCTGGC 239
Query 236 CTCGCCGCCGTCGTACGATGCGCTTGGCTCCGGCGGTTTACAGCCGGAGGAGATTCGCCG 295
||||||||||||||||| ||||||||||||||||| ||||| | ||||||||||||||||
Sbjct 240 CTCGCCGCCGTCGTACGTTGCGCTTGGCTCCGGCGATTTACCGTCGGAGGAGATTCGCCG 299
Query 296 TCACCGAACAAAGGCTTGAAAAAGAAAGCTCTTCAGTCTCTTCCAAGATCCACTTTCACC 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCACCGAACAAAGGCTTGAAAAAGAAAGCTCTTCAGTCTCTTCCAAGATCCACTTTCACC 359
Query 356 GCCGCGGAATCAACCTCCGGCGCCGCCGCTGAAGAGGGAGACTCGACGGAATGTGCTATT 415
||||||||||||||||||||||||||| |||| || |||||||| |||||||||||||||
Sbjct 360 GCCGCGGAATCAACCTCCGGCGCCGCCTCTGACGACGGAGACTCAACGGAATGTGCTATT 419
Query 416 TGCCTCACTGACTTCGCCGACGGTGAAGAAATAAGAGTGCTTCCTCTTTGTGGTCATTCT 475
|| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 420 TGTCTCACTGACTTCGCCGACGGCGAAGAAATAAGAGTGCTTCCTCTTTGTGGACATTCT 479
Query 476 TTCCACGTGGAGTGTATTGACAAATGGCTAGTTTCTAGGTCTTCTTGTCCTTCTTGTCGC 535
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 480 TTCCACGTGGAGTGTATTGACAAATGGCTAGTTTCTAGGTCTTCGTGTCCTTCTTGTCGC 539
Query 536 AGGATTCTTACGCCGGTGAGATGTGACCGGTGTGGTCATGCTTCTACGGCGGAGATGAAA 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CGGATTCTTACGCCGGTGAGATGTGACCGGTGTGGTCATGCTTCTACGGCGGAGATGAAA 599
Query 596 GATCAAGCTCATCGTCATCAACATCACCAACACTCTTCTACTACCATTCCTACGTTTCTT 655
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 600 GATCAAGCTCATCGTCATCAACATCACCAACACTCTTCTTCTACCATTCCAACGTTTCTT 659
Query 656 CCTTAATTAACACTAATTTTTGTTTTATTATGGCAATAATTAATTGCATAAAAGTTATGT 715
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 660 CCTTAATTAACACTAATTTTTGTTTTATTATGGCAATAATTGATTGCATAAAAGTTATGT 719
Query 716 AAAGTGAGTTTAATTAGGATTAGAGAG 742
||||||||||||||||||| |||||||
Sbjct 720 AAAGTGAGTTTAATTAGGAATAGAGAG 746
Score = 87.9 bits (47), Expect = 1e-16
Identities = 51/53 (96%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 774 GTTGTAATCCAGTGTATTTAATCAAATCTCAGATGGAGTTCAAATTTCGAGAT 826
||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 746 GTTGTAATCCACTGTACTTAATCAAATCTCAGATGGAGTTCAAATTTCGAGAT 798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30574579434
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5