BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17470.1
Length=1684
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319696 jgi|Araly1|319696|fgenesh1_pm.C_scaffold_3002712 2584 0.0
Ahg475986 jgi|Araly1|475986|fgenesh2_kg.2__1116__AT1G68600.1 1234 0.0
Ahg912460 jgi|Araly1|912460|Al_scaffold_0001_2714 1064 0.0
> Ahg319696 jgi|Araly1|319696|fgenesh1_pm.C_scaffold_3002712
Length=1620
Score = 2584 bits (1399), Expect = 0.0
Identities = 1551/1624 (96%), Gaps = 11/1624 (1%)
Strand=Plus/Plus
Query 1 ATGGGTCCATTTCATCAGCAAAGCAGAGAGAGGCTTCTCTCGCAGAATGAATACTCAGAT 60
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGGGTCCATTTCATCCGCAAAGCAGAGAGAGGCTTCTCTCGCAGAATGGATACTCAGAT 60
Query 61 AT-GTGTTTCCGCAAGATCACAAACCTGTGCGAGTTGGGACATTCCGATCGTCGAAGGAT 119
| ||||||||| ||||||||||| |||||||||||||||||||| |||||| |||||||
Sbjct 61 -TCGTGTTTCCGAAAGATCACAAAACTGTGCGAGTTGGGACATTCAGATCGTAGAAGGAT 119
Query 120 CTTCTTCGCGGTGAAGATGGGAATGGCTCTTGCCCTCTGCTCCGTTGTTATTTTCCTCAA 179
|||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 120 CTTCTTCGCGGTCAAGATGGGAATGGCTCTTGCCCTCTGCTCCATTGTTATCTTCCTCAA 179
Query 180 AGAGCCGTTGCATGATGCTAGTAAATACTCTGTATGGGGCATCCTTACTGTCGTCGTGGT 239
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 180 AGAGCCGTTGCATGATGCTAGTAAATACTCTGTATGGGGCATCCTCACTGTGGTCGTGGT 239
Query 240 TTTCGAGTATTCCGTTGGAGCAACTTTGGTCAAAGGATTCAACAGAGCGATAGGCACAGT 299
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 TTTCGAGTATTACGTAGGAGCAACTTTGGTCAAAGGATTCAACAGAGCGATAGGCACGGT 299
Query 300 ATCTGCTGGAGGGCTCGCTCTTGGCATCGCGAGGCTCTCTGTTTTATCAAGAGATTTCGA 359
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 300 ATCTGCTGGAGGACTCGCTCTTGGCATCGCGAGGCTCTCTGTTTTATCAGGAGATTTAGA 359
Query 360 GCAAACCATCATCATAACCTGCATTTTCCTAGCAGGTTTCATTGCTAGTTATTCAAAACT 419
|||| |||||||||||| |||||||||||| |||||||||||| |||||||||| |||||
Sbjct 360 GCAAGCCATCATCATAATCTGCATTTTCCTTGCAGGTTTCATTTCTAGTTATTCGAAACT 419
Query 420 CCACCCGGCCATGAAGCCATATGAATACGCATTCAGGGTGTTCTTGTTGACATTCTGTAT 479
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 420 CCACCCGGCCATGAAACCATATGAATATGCATTCAGGGTGTTCTTGTTGACATTCTGTAT 479
Query 480 TGTTCTGGTTTCGGGGAACAATACCGGAGACTTCTTCAGCACGGCGTATTACAGGTTTTT 539
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 480 TGTTCTGGTTTCGGGGAACAATACCGGAGATTTCTTCAGCACAGCGTATTACAGGTTTTT 539
Query 540 GTTTATTGTTGTTGGTGCAACCACATGTTTGGTTGTGAATATATTCATATTTCCAATATG 599
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 540 GTTTATTGTTATTGGTGCAACCACATGTTTGGTTGTGAATATATTCATATTTCCGATATG 599
Query 600 GGCCGGGGAGGATCTCCATAAACTGGTGGCCAATAATTTCAAGAGTGTGGCAAATTCCCT 659
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GGCCGGGGAAGATCTCCATAAACTGGTGGCCAATAATTTCAAGAGTGTGGCAAATTCCCT 659
Query 660 AGAAGGATGTG-TAAATGGCTACTTGCAATGTGTGGAATATGAGAGAGTACCCTCGAAGA 718
||||||||||| | |||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 660 AGAAGGATGTGCT-AATGGCTATTTGCAATGTGTGGAATACGAGAGAGTACCCTCGAAGA 718
Query 719 TTCTCACGTACCAAACATCTGATGATCCATTATACAGTGGGTACAGGTCCGCTATTCAAT 778
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 719 TTCTCACGTACCAAACATCTGATGATCCATTATATAGTGGGTACAGGTCCGCTATTCAAT 778
Query 779 CTACAAATCAGGAAGAATCTCTGCTCGATTTTGCCATATGGGAGCCTCCACATGGACCTT 838
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CAACAAATCAAGAAGAATCTCTGCTCGATTTTGCCATATGGGAGCCTCCACATGGACCTT 838
Query 839 ACAGAACGTTTAACCATCCCTGGAAAAACTATGTCAAACTTAGTGGTGCAGTAAGGCATT 898
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 839 ACAGAACGTTTAACCATCCATGGAAAAACTATGTCAAACTTAGTGGTGCATTAAGGCATT 898
Query 899 GTGCTTTCACCGTCATGGCGATACATGGTTGCATACTTTCAGAGATACAGGCAGCTCCAG 958
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 899 GTGCTTTCACCGTCATGGCAATACATGGTTGCATTCTTTCAGAGATACAGGCAGCTCCAG 958
Query 959 AGAAACGACAGGCATTT-CGTCATGAGCTTCAAAGAGTTGGCAATGAAGGCGCAAAAGTT 1017
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AGAAACGACAGGC-TTTCCGTCATGAGCTTCAAAGAGTTGGCAATGAAGGCGCAAAAGTT 1017
Query 1018 CTGCGTTTGATTGGAGAAAAAGTGGAGAAAATGGAGAATCT-AGGCCCGGGAGAGATTCT 1076
||||||||||||||||| |||||||||||||||||||| || || ||| || ||||||||
Sbjct 1018 CTGCGTTTGATTGGAGACAAAGTGGAGAAAATGGAGAAGCTAAGCCCCAGG-GAGATTCT 1076
Query 1077 AAATGACGTTCAACGTGCAGCAGAGGAGCTACAGATGAAAATAGACAGTAAATCCTACCT 1136
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 AAATGACGTTCAACTTGCAGCAGAGGAGCTACAGATGAAAATAGACAGTAAATCCTACCT 1136
Query 1137 TCTTGTGAACTCAGAAAGCTGGGCAGCTACTAAAGAGAAAGCTGAAGCAGAAGAATATGA 1196
|||||||||||||||||||||||| |||||||||||| |||||||||| |||| | ||||
Sbjct 1137 TCTTGTGAACTCAGAAAGCTGGGCGGCTACTAAAGAGCAAGCTGAAGCTGAAGTAGATGA 1196
Query 1197 AGAAGAAGCTCACGAGACCAAAGTGATCAAATCCTTAAGTCAGATTTGGGATACCAACAG 1256
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1197 AGAAGAAGCTCACGAGACCAAAGTGATCAAATCCTTAAGTCAGATTTGGGATACCAGCAG 1256
Query 1257 TAGCAGCAACAATCAGAATCCAGCTAGTGGTAATGATGAATCTCAGATATGGGAATCAAC 1316
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1257 TAGCAGCAACAACCAGAATCCAACTAGTGGTAATGATGAATCTCAGATATGGGAATCAAC 1316
Query 1317 AGAGAGTATGATGTTAAGAAACCGTGAGACATGGCCAAGTGTGTCCTTCATTGGTGGTTC 1376
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1317 AGAGAGTATGATGTTAAGAAACCGCGAGACATGGCCAAGTGTGTCCTTCATTGGTGGTTC 1376
Query 1377 TGTGGTAAATGAGACAGTATATAAAGTATACGAAAGCGCGAGTTCTTTGTCTTTAGCTAC 1436
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 AGTGGTAAATGAGACAGTATATAAAGTATACGAAAGCGCGAGTTCTTTGTCTTTAGCTAC 1436
Query 1437 GTTTGCTTCCCTTCTCATCGAGTTTGTTGCAAGGCTGGAGAACCTTGTAAACGCTTTTGA 1496
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1437 GTTTGCTTCCCTTCTCATCGAGTTTGTTGCAAGGCTGGAGAACCTTGTAAACGCCTTTGA 1496
Query 1497 GGAGCTAAGCACAAAAGCAGATTTCAGAGACCCGGTTCCTCTTAACGTAGTGGATCAAGA 1556
||||||||||| |||||||||||||| ||| ||||||| | ||||||||||||||||||
Sbjct 1497 GGAGCTAAGCAGAAAAGCAGATTTCAAAGATCCGGTTCTTGTTAACGTAGTGGATCAAG- 1555
Query 1557 AGGATTATGGACAACACTCATGAGACTTAGGAGACTTAGGAGATATTTTGGCAGAAGTTA 1616
| ||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1556 -G-ATTATGGACAAGACTCATGAGACTTAGGAGACTTAGGAGATACTTTAGCAGAAGTTA 1613
Query 1617 AAAC 1620
||||
Sbjct 1614 AAAC 1617
> Ahg475986 jgi|Araly1|475986|fgenesh2_kg.2__1116__AT1G68600.1
Length=1867
Score = 1234 bits (668), Expect = 0.0
Identities = 1225/1483 (83%), Gaps = 82/1483 (6%)
Strand=Plus/Plus
Query 95 TGGGACATTCCGATCGTC-GAAGGATCTT-CTTCGCGGTGAAGATGGGAATGGCTCTT-G 151
|||||||||| ||||||| ||| | | || |||| | | |||||||| || ||| || |
Sbjct 247 TGGGACATTCTGATCGTCGGAA-GCT-TTACTTCTCCTTCAAGATGGGGATTGCT-TTGG 303
Query 152 CCCTCTGCTCCGTT-GTTAT-TTTCCTCAAAGAGCCG-TTGCATGATGCTAGTAAATACT 208
| ||||| | | || || || ||| |||||||| ||| || || ||||| ||||||| |
Sbjct 304 CACTCTG-TTCTTTCGTCATCTTT-CTCAAAGAACCGCTT-CAAGATGCCAGTAAATTCG 360
Query 209 CTGTATGGGGC-ATCCTTACTGTCG-TCGTGGTTTTCGAGTATTCCGTTGGAGCAACTTT 266
| || | |||| || || || |||| || | |||||||||||| || |||||||||||
Sbjct 361 CAGT-TTGGGCGATTCTCACCGTCGTTC-TCATTTTCGAGTATTATGTCGGAGCAACTTT 418
Query 267 GGTCAAAGGATTCAACAGAGCGATAGGCACAGTATCT-GCTGGAGGG-CTCGCTCTTGGC 324
||| ||||||||||| ||||| |||||||| | | | ||||| ||| || ||||| ||
Sbjct 419 GGTTAAAGGATTCAATAGAGCTTTAGGCACAATGT-TAGCTGG-GGGACTTGCTCTCGGG 476
Query 325 ATCGCG-AGGCTCTCTGTTTTATCAAGAGA-TTTCG-AGCAAACCATCATCATAACCTGC 381
||||| | ||||||||||||| || |||| ||| | || || ||||||| ||| ||||
Sbjct 477 GTCGCGCA-GCTCTCTGTTTTAGCAGGAGAGTTT-GAAG-AAGTCATCATCGTAATCTGC 533
Query 382 ATTTTCCTAGCAGGTTTCATTGCTAGTTATTCAAAACTCCACCCGGCCATGAAGCCATAT 441
|| ||||| |||||||| ||||||||||| |||||| || |||||||||| |||||
Sbjct 534 ATATTCCTTGCAGGTTTTGGTGCTAGTTATTTGAAACTCTACGCGGCCATGAAACCATAC 593
Query 442 GAATACGCATTCAGGGTGTTCTTGTTGACAT-TCTGTATTGTTCTGGTTTCGGGGAACAA 500
||||||||||||||||||||| |||||||| | ||||| ||||| ||||| ||||||||
Sbjct 594 GAATACGCATTCAGGGTGTTCAAGTTGACATAT-TGTATAGTTCTTGTTTCCGGGAACAA 652
Query 501 -TACCGGAGACTTCTTCAGCACGGCGTATTACAGGTTTTTGTTTATTGTTGTTGGTGCAA 559
| | |||||||||| |||||||| ||||||||| | ||| |||||||| |||||||||
Sbjct 653 CT-CAAGAGACTTCTTAAGCACGGCTTATTACAGGATCTTGCTTATTGTTCTTGGTGCAA 711
Query 560 CCACATGTTTGGTTGTGAATATA-TTCATATTTCCAATATGGGCCGGGGAGGATCTCCAT 618
||| |||||| |||||||| || ||| | ||||| |||||||| ||||| |||||||||
Sbjct 712 CCATTTGTTTGCTTGTGAATGTATTTC-TGTTTCCGATATGGGCGGGGGAAGATCTCCAT 770
Query 619 AAACTGGTGGCCAATAATTTCAAGAGTGTGGCAAATTCCCTAGAAGGATGTGTAAATGGC 678
||||||||||| || || ||||||| ||||||||||||| ||||||||||||| |||||
Sbjct 771 AAACTGGTGGCTAAAAACTTCAAGACTGTGGCAAATTCCTTAGAAGGATGTGTTAATGGT 830
Query 679 TACTTGCAATGTGTGGAATATGAGAGAGTACCCTCGAAGATTCTCACGTACCAAACATCT 738
|||||||||||||||||||| |||||| |||| |||||||| |||||||||||| | ||
Sbjct 831 TACTTGCAATGTGTGGAATACGAGAGAATACCGTCGAAGATACTCACGTACCAAGCTTCA 890
Query 739 GATGATCCATTATACAGTGGGTACAGGTCCGCTATTCAATCTACAAATCAGGAAGAATCT 798
||||||||||||||||| || ||||| |||||| |||||||||||| || ||||| |||
Sbjct 891 GATGATCCATTATACAGCGGATACAGATCCGCTGTTCAATCTACAAGCCAAGAAGATTCT 950
Query 799 CTGCTCGATTTTGCCATATGGGAGCCTCCACATGGACCTTACAGAACGTTTAACCATCCC 858
|||| ||||| || |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 951 TTGCTTGATTTCGCTATATGGGAGCCTCCACATGGACCTTACAAAACGTTTAACCATCCT 1010
Query 859 TGGAAAAACTATGTCAAACTTAGTGGTGCAGTAAGGCATTGTGCTTTCACCGTCATGGCG 918
||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 1011 TGGAAAAACTACGTCAAACTTAGTGGTGCAGTGAGGCATTGCGCTTTCACAGTCATGGCA 1070
Query 919 ATACATGGTTGCATACTTTCAGAGATACAGGCAGCTCCAGAGAAACGACAGGCATTTC-G 977
|| ||||| ||||| |||||||| ||||||||||||||||||||| |||| | |||| |
Sbjct 1071 ATGCATGGATGCATTCTTTCAGAAATACAGGCAGCTCCAGAGAAAAGACATGT-TTTCAG 1129
Query 978 TCATGAGCTTCAAAGAGTTGGCAATGAAGGCGCAAAAGTTCTGCGTTTGATTGGAGAAAA 1037
| | ||||||| |||||||| |||||||| |||||| || | |||||| ||||||||||
Sbjct 1130 TAACGAGCTTCGGAGAGTTGGTAATGAAGGAGCAAAAATTTTACGTTTGTTTGGAGAAAA 1189
Query 1038 AGTGGAGAAAATGGAGAATCTA-G-----GCC-CGGGAGAGATTCT-AAATGACGTTCAA 1089
|||||||||||||||||| ||| | ||| ||| ||||||||| ||| |||||||||
Sbjct 1190 AGTGGAGAAAATGGAGAAGCTAAGCCTAAGCCTCGG-AGAGATTCTGAAA-GACGTTCAA 1247
Query 1090 CGTGCAGCAGAGG-AGCTACAGATGAAAATAGACAGTAAATCCTACCTTCTTGTGAACTC 1148
|| ||||| |||| | ||||| ||||| ||||| |||||||| || |||||||| |||||
Sbjct 1248 CGAGCAGCCGAGGCA-CTACAAATGAAGATAGATAGTAAATCATATCTTCTTGTCAACTC 1306
Query 1149 AGAAAGCTGGGCAGCTACTAAAGAGAAAGCTGAAGCAGAAGAATAT-GA-A----GA--A 1200
||| ||||||||||||| | ||||| |||||||||| |||||| | || | || |
Sbjct 1307 AGAGAGCTGGGCAGCTATTCAAGAGCAAGCTGAAGCCGAAGAAGCTCGAGAAAACGACCA 1366
Query 1201 -GAAGCTCA----CGA-GA--CCAAAGTGATCAAATCCTTAAGTCAGATTTGGGATACCA 1252
||||| || ||| || |||||||||||||||||||||| |||||||||||||| |
Sbjct 1367 AGAAGC-CAAAGACGATGAGACCAAAGTGATCAAATCCTTAAGCCAGATTTGGGATACTA 1425
Query 1253 ACAGTAGCAGCAACAATCAGAATCCAGCTAGTGGTAATGATGAATCTCAGATATGGGAA- 1311
||| | || | |||||| || || ||| | |||| ||||||||| || |||
Sbjct 1426 ACA--A-CA--A-CAATCA---TC-AG--AGTC--A-TGATCAATCTCAGA-ATTGGATG 1469
Query 1312 TCAACAGAGAGTATGATGTT-AAGAAACCGTGAGACATGGCCAAGTGTGTCCTTCATTGG 1370
|||||||||||||||||| | ||||| ||| || | |||||||| |||||||||||||
Sbjct 1470 TCAACAGAGAGTATGATGCTCAAGAA-CCGAGAAATGTGGCCAAGCATGTCCTTCATTGG 1528
Query 1371 TGGTTCTGTGGTAAATGAGACAGTATATAAAGTATACGAAAGCGCGAGTTCTTTGTCTTT 1430
|||| ||||||| ||||||| | || |||||||||||||||||||||||| |||||| |
Sbjct 1529 TGGTACTGTGGTGAATGAGATTGAATGTAAAGTATACGAAAGCGCGAGTTCGTTGTCTCT 1588
Query 1431 AGCTACGTTTGCTTCCCTTCTCATCGAGTTTGTTGCAAGGCTGGAGAACCTTGTAAACGC 1490
|||||| ||||||||||||||||||||||||||||||||||| | ||| |||| || ||
Sbjct 1589 AGCTACATTTGCTTCCCTTCTCATCGAGTTTGTTGCAAGGCTCCAAAACATTGTCAATGC 1648
Query 1491 TTTTGAGGAGCTAAGCACAAAAGCAGATTTCAGAGACCCGGTT 1533
||||||||||| ||||||||||| | ||||| ||| || |||
Sbjct 1649 ATTTGAGGAGCTTAGCACAAAAGCTGGTTTCAAAGATCCTGTT 1691
> Ahg912460 jgi|Araly1|912460|Al_scaffold_0001_2714
Length=1704
Score = 1064 bits (576), Expect = 0.0
Identities = 1187/1476 (80%), Gaps = 66/1476 (4%)
Strand=Plus/Plus
Query 90 CGAGTTGGGACATTCCGATCGTC-GAAGGATCTT-CTTCGCGGTGAAGATGGGAATGGCT 147
|||| |||| | ||||||||||| ||| | | || |||| | || |||||||| ||||||
Sbjct 174 CGAGATGGGTCGTTCCGATCGTCGGAAAG-T-TTACTTCTCCGTCAAGATGGGGATGGCT 231
Query 148 CTTGCCCTCTGCTCCGTT-GTTATTTTCCTCAAAGAGCCGTTGCATGATGCTAGTAAATA 206
|| || ||||| | | || || || | ||||||||| | | | ||| ||||| || ||
Sbjct 232 CTCGCACTCTG-TTCTTTCGTCATCTACCTCAAAGAAACACTCCGTGACGCTAGCAAGTA 290
Query 207 CTCTGTATGGGGC-ATCCTTACTGTCGTCGTGGTTTTCGAGTATTCCGT-T-GGAGCAAC 263
| | || | |||| ||||||||||| ||||| || ||||| || | || | ||||||||
Sbjct 291 CGCCGT-TTGGGCGATCCTTACTGTTGTCGTCGTCTTCGAATA-T-AGTATAGGAGCAAC 347
Query 264 TTTGGTCAAAGGATTCAACAGAGC-GATAGGCACAGTATCTGCTGGAGGGCTCGCTCTTG 322
||||||||||||||||| ||||| | |||| ||| | ||||||||||| || |||||||
Sbjct 348 ATTGGTCAAAGGATTCAATAGAGCTG-TAGGAACACTCTCTGCTGGAGGACTTGCTCTTG 406
Query 323 GCATCGCGAGGCTCTCTGTTTTATCAAGAGATTTCG-AGCAAAC-CATCATCATAACCTG 380
|||| || || |||||||||| | | |||| |||| || ||| ||| ||||| | | |
Sbjct 407 GCATAGCTAGACTCTCTGTTTCAGCTGGAGAATTCGAAG--AACTCATTATCATTATCAG 464
Query 381 CATTTTCCTAGCAGGTTTCAT-TGCTAGTTATTCAAAACTCCACCCGGCCATGAAGCCAT 439
|||||| | |||||||| | ||| ||||||| ||||| ||||||| |||||| | |
Sbjct 465 TATTTTCATTGCAGGTTT-TTCTGCAAGTTATTTGAAACTATACCCGGCGATGAAGTCGT 523
Query 440 ATGAATACGCATTCAGGGTGTTCTTGTTGACATTCTGTATTGTTCTGGTTTCGGGGAACA 499
||||||| |||||||||||||| |||||||||| ||| |||||||| || || || ||||
Sbjct 524 ATGAATATGCATTCAGGGTGTTTTTGTTGACATACTGCATTGTTCTTGTGTCTGGAAACA 583
Query 500 A-TACCGGAGACTTCTTCAGCACGGCGTATTACAGGTTTTTGTTTATTGTTGTTGGTGCA 558
| | | |||| || || |||| || ||||| ||||||||| ||||| | ||||||||
Sbjct 584 ACT-CTAGAGATTTTTTTTGCACTGCTTATTATAGGTTTTTGCTTATTCTGGTTGGTGCT 642
Query 559 ACCA-CATGTTTGGTTGTGAATATATTCATATTTCCAATATGGGCCGGGGAGGATCTCCA 617
| | | | ||||| |||||| ||||| ||| |||| || ||||| || || || |||||
Sbjct 643 GCTATC-TCTTTGGGTGTGAACATATTTATACTTCCCATTTGGGCTGGAGAAGACCTCCA 701
Query 618 TAAACTGGTGGCCAATAATTTCAAGAGTGTGGCAAATTCCCTAGAAGGATGTGTAAATGG 677
|||||| |||| || ||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 702 TAAACTAGTGGTTAAGAATTTCAAGAGTGTGGCCAATTCCCTTGAAGGATGTGTTAATGG 761
Query 678 CTACTTGCAATGTGTGGAATATGAGA-GAGTACCCTCGAAGATTCTCACGTACCAAACAT 736
|||||||||||||| ||||| |||| || | || |||||||||||||| |||||| | |
Sbjct 762 GTACTTGCAATGTGTTGAATACGAGAGGA-TTCCTTCGAAGATTCTCACTTACCAAGCTT 820
Query 737 CTGATGATCCATTATACAGTGGGTACAGGTCCGCTA-TTCAATCTACAAATCAGGAAGAA 795
| |||||||||||||||||||| |||||||| | || | |||||||| | || |||||
Sbjct 821 CGGATGATCCATTATACAGTGGATACAGGTCTG-TAGTCCAATCTACGAGCCAAGAAGAT 879
Query 796 TCTCTGCTCGATTTTGCCATATGGGAGCCTCCACATGGACCTTAC-AGAACGTTT-AACC 853
|||||||| |||||||| ||||||||||||||||||||||| ||| || || ||| |||
Sbjct 880 TCTCTGCTTGATTTTGCAATATGGGAGCCTCCACATGGACCATACAAG-AC-TTTCCACC 937
Query 854 ATCCCTGGAAAAACTATGTCAAACTTAGTGGTGCAGTAAGGCATTGTGCTTTCACCGTCA 913
|||| ||| |||||||||||||||||||||||| ||||||||||| ||||||| ||||
Sbjct 938 ATCCATGGGCAAACTATGTCAAACTTAGTGGTGCGGTAAGGCATTGCGCTTTCATGGTCA 997
Query 914 TGGCGATACATGGTTGCATACTTTCAGAGATACAGGCAGCTCCAGAGAAACGACAGGCAT 973
|||| || ||||| ||||| ||||| || || |||||||||||||| ||| | ||||| |
Sbjct 998 TGGCAATGCATGGCTGCATTCTTTCGGAAATTCAGGCAGCTCCAGAAAAAAGGCAGGCTT 1057
Query 974 TTCGTCATGAGCTTCAAAGAGTTGGCAATGAAGGCGCAAAAGTTC-TGCGTTTGATTGGA 1032
||||||| || ||||| |||||||| |||||||| || |||| || || | ||| |||||
Sbjct 1058 TTCGTCAAGAACTTCAGAGAGTTGGAAATGAAGGAGCCAAAG-TCTTGAGATTGTTTGGA 1116
Query 1033 GAAAAAGTGGAGAAAATGGAGAATCTAGGCCCGGGAGA-GATTCTAAATGACGTTCAACG 1091
||||||||||||||||||||||| ||| |||| ||| | | |||| ||||| ||||| ||
Sbjct 1117 GAAAAAGTGGAGAAAATGGAGAAACTAAGCCCAGGAAACG-TTCTCAATGAAGTTCAGCG 1175
Query 1092 TGCAGCAGAGGAGCTACAGATGAAAATAGACAGTAAATCCTACCTTCTTGTGAACTCAGA 1151
||||||||||| ||||||||||||||||||| ||| |||| ||||||||| ||||||||
Sbjct 1176 AGCAGCAGAGGAACTACAGATGAAAATAGACACTAACTCCTTCCTTCTTGTCAACTCAGA 1235
Query 1152 AAGCTGGGCAGCTACT-AAAGAGAAAGCTGAAGC--A-GAAG---AA------TATGAAG 1198
||||||||| |||| | ||||||||||| ||||| | |||| || ||| | |
Sbjct 1236 AAGCTGGGCTGCTA-TGAAAGAGAAAGCCGAAGCTGAAGAAGCGCAACAAAACTATCACG 1294
Query 1199 AAGAAGCTCACGA-GA--CCAAAGTGATCAAATCCTTAAGTCAGATTTGGGATACCAACA 1255
||||| |||| || ||||||||||| ||||| | || ||||| ||||| | ||||
Sbjct 1295 AAGAAAAAGACGATGAGTCCAAAGTGATCCAATCCCTCAGCCAGATGTGGGACAATAACA 1354
Query 1256 GTAGC-AGCAACAATCAGAATCCAG-CTAGTGGTAATGATGAATCTCAGATATGGGAAT- 1312
| | | || || |||||||||| | | |||||||||| |||||| ||||| | |
Sbjct 1355 ACAACCATCATCA-TCAGAATCCACAC-ACTGGTAATGAT---TCTCAGCTATGG-ATTT 1408
Query 1313 CAACAGAGAGTATGATG-TTAAGAAACCGTGAGA-CATGGCCAAGTGTGTCCTTCATTGG 1370
||||||||||||||||| ||| ||| ||| || | | |||||||| || || || || ||
Sbjct 1409 CAACAGAGAGTATGATGCTTAGGAA-CCGCGAAAAC-TGGCCAAGCGTCTCTTTTATAGG 1466
Query 1371 TGGTTCTGTGGTAAATGAGACAGTATATAAAGTATACGAAAGCGCGAGTTCTTTGTCTTT 1430
|||||| || | |||||||||| || ||||||| | |||||||||||||||||||| |
Sbjct 1467 CGGTTCTATGATCAATGAGACAGAATCTAAAGTACATGAAAGCGCGAGTTCTTTGTCGCT 1526
Query 1431 AGCTACGTTTGCTTCCCTTCTCATCGAGTTTGTTGCAAGGCTGGAGAACCTTGTAAACGC 1490
||| || ||||| || ||| | |||||||||||||||||||| |||| |||| |||||
Sbjct 1527 AGCCACATTTGCGTCTCTTTTGATCGAGTTTGTTGCAAGGCTCCAGAATATTGTTAACGC 1586
Query 1491 TTTTGAGGAGCTAAGCACAAAAGCAGATTTCAGAGA 1526
||||||||||||||||| ||||| ||||||| |||
Sbjct 1587 GTTTGAGGAGCTAAGCACTAAAGCTGATTTCAAAGA 1622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63153626210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5