BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17520.1
Length=2915
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480637 jgi|Araly1|480637|fgenesh2_kg.3__3338__AT2G17520.1 4340 0.0
> Ahg480637 jgi|Araly1|480637|fgenesh2_kg.3__3338__AT2G17520.1
Length=2894
Score = 4340 bits (2350), Expect = 0.0
Identities = 2749/2933 (94%), Gaps = 62/2933 (2%)
Strand=Plus/Plus
Query 4 AAGAAGATTCAAAAGGAGAACGCGTTAGACACACTAAGGGTGGGGGCAAGGGAGGAGAAA 63
||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1 AAGAAGATTCAAAAGGAAAACGCGTTAGGCACACT-AGGGTGGGGGCAAGGGAGGAGAAA 59
Query 64 CTCGCCGGACAGAGACGGAGATCCCTAAACCGCAGCCTCAGACTAAAGCTTCGCATCTTA 123
|||| | | | |||||||||||||||||||||||| || ||| ||||||||||||
Sbjct 60 CTCG-C---C---G--GGAGATCCCTAAACCGCAGCCTCACACAAAACCTTCGCATCTTA 110
Query 124 TCTCCGATCCATCGTTGACTTCACTCTTAGCTGATCATCATCATCATCTCTATCTCTGTT 183
||||| || | ||||||||||| | | | | | | |||||||||||||||||||||
Sbjct 111 TCTCC-AT---TGGTTGACTTCAC-C--A--TCAGC-TGATCATCATCTCTATCTCTGTT 160
Query 184 CGGATTCTCCATAATTGATCCGGACCATGCCGCCGAGATGTCCTTTCCTCCGCCATCTTT 243
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 161 CAGATTCTCCATAATTGATCCGGACCATGCCGCCGAGATGTCGTTTCCTCCGCCATCTAT 220
Query 244 TCTTCTTACTACTATTACTCTCACCATGGATCATGTCTCCTTGCGGCGGCGCTGCCGACG 303
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 TCTTCTTACTACTGTTACTCTCACCATGGATCATGTCTCCTTGCGGCGGCGCTGCCGACG 280
Query 304 ATGTGACGTATCCGATCGTTCCATCTAGTCCCGGCCGCAGATCAATTTTGCAGATTCGTC 363
||||||||||||||||||| ||||||||||| || |||||| | |||||||||| | ||
Sbjct 281 ATGTGACGTATCCGATCGTGCCATCTAGTCCTGGTCGCAGAACGATTTTGCAGA-T--TC 337
Query 364 GTGAACCACCAACAGAGCCAAATACGAAAC-TTGTTGTTGAT-CGTGATGGGAAGGTGTT 421
|| | | ||||| |||||| ||| ||| ||||||| ||| |||||| |||||
Sbjct 338 GT-------C-A-TGAGCCCAATACG-AACTTTGATGTTGATCCGT-CTGGGAAAGTGTT 386
Query 422 TTTAAAGCAGCAA-C-CGAAAG-AAACACCATACTGGTCCTTTTCAACAGGATCACCAAT 478
||||||||||||| | | | | ||||| ||| ||||||||||||||||||||||| ||
Sbjct 387 TTTAAAGCAGCAATCACCAGCGCAAACA--ATA-TGGTCCTTTTCAACAGGATCACCTAT 443
Query 479 GCACTCGTTATATCAGGCT-C-C----TGCTAATAACAACACAGAAAATGCTACTGAGAT 532
||| ||||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 444 GCATTCGTTATATCAGGCTCCTCTAAGTGCTAATAACAACACAGAAAATGCTACTGAGAT 503
Query 533 AA-CTCGTCCTCACATAATTGTTGAATATCTGAACAACTCAAAGGCGGCTACTACTGTCG 591
|| | ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 504 AAGC-CGTCCTCACATAATTGTAGAATATCTGAACAACTCAAAGGCGGCTACAACTGTTG 562
Query 592 ATGGCTATCATAATTGGACAGTTCAGGAGTTTTTTAGGCAGAAGCCACTTGTAACAGATG 651
|||||||||||||||||||||||||||| ||||||||||||| ||||||||| || ||||
Sbjct 563 ATGGCTATCATAATTGGACAGTTCAGGACTTTTTTAGGCAGAGGCCACTTGTGACGGATG 622
Query 652 ATGGTGTGACTCTTGGATCAGAAACAACTAGTGCCTATTTGGTTGATGGTAGATCAGGGA 711
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 623 ATGGTGTGACTCTTGGGTCAGAAACAACTACTGCCTATTTGGTTGATGGTAGATCAGGGA 682
Query 712 GGCTGATTCATGTTTACAAATCAACTGGAGATACTAAGATTACTAATGCTCTCGTGAAGC 771
||||||||||||||||||||||||| ||||||||||| |||||||||||| | |||||||
Sbjct 683 GGCTGATTCATGTTTACAAATCAACCGGAGATACTAAAATTACTAATGCTATGGTGAAGC 742
Query 772 CCGCTAGCACTGAAGATTTTGTGAATGAACCTCTTCTTATCAGGCGAACAGATTCCAAAC 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 CCGCTAGCACTGAAGATTTTGTGAATGAACCTCTTCTTATCAGGCGAACAGATTCCAAAC 802
Query 832 TTGAGCATTTTAGTAAAACCACTGGGAAGCTTGTCTGGAATTTGACGGTTTCTCACTTCA 891
| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 803 TAGAGCATTTTAGTAAAACCACTGGAAAGCTTGTGTGGAATTTGACGGTTTCTCACTTCA 862
Query 892 GAGCTGCTTTACTATGTGATCCTGTTTTCAATTCTGGCTATGACCTCGGTCCTAAACTTC 951
||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 863 GAGCTTCTTTACTATGTGATCCAGTTTTCAATTCTGGCTATGAGCTCGGTCCTAAACTTC 922
Query 952 AAACTGGAATTTATATGCCATTGTTATGTGGATCACAAATTGACGTTCGTGGCCCAGAAA 1011
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 923 AAACTGGAATTTATATGCCATTGGTATGTGGGTCACAAATTGACGTTCGTGGCCCAGAAA 982
Query 1012 TTGTTATCAGGGTGCTCCATGATCAGCCAATGAATGTGAAAATGCTACCCTCCCCTTCCC 1071
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 TTGTTATTAGGGTGCTCCATGATCAGCCAATGAATGTGAAAATGCTACCCTCCCCTTCCC 1042
Query 1072 TAAATCACTTCGAGAGCGAAAACAGCATCATGCCTTTTGGAAAAGCCAGAGAGTCAAGAA 1131
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1043 AAAATCACTTAGAGAGCGAAAACAGCATCATGCCTTTTGGAAAAGCCAGAGAATCAAGGA 1102
Query 1132 AGTTACAAGAGCAACATAAGCAGAAATATACATATTTGTTTGGACAATGGTCACCAGTAA 1191
||||||||||||||||| ||| ||||||| |||| ||||||||||||||||||||||||
Sbjct 1103 AGTTACAAGAGCAACATGGGCACAAATATAGATATGTGTTTGGACAATGGTCACCAGTAA 1162
Query 1192 AGTTATTGGCCCCTTTAGTGCTTCTAGGTGTTGTTGTCTCTGTTTTCATTAAAAAGTTTT 1251
||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1163 AGTTATTGGTCCCTTTAGTGCTTCTGGGTGTTGTTATCTCTGTTTTCATTAAAAAGTTTT 1222
Query 1252 CGTCGAGGGGCAGTGATGTTAGTTTGAAAGCTGGACCTTCCAAAAAGAAGAAGAACCGTA 1311
| ||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1223 CTTCGAGTGGCAGTGATGTTAGTTCGAAATCTGGACCTTCCAAAAAGAAGAAGAACCGTA 1282
Query 1312 AATCCGCGAAGGATACAAATAGGCAGTCAGTTCCTCGTGGCCAGGATCAGTTCGAGCTCA 1371
|||| | ||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1283 AATCAGGGAAGGATGCAAATAGGCAGTCAGTTCCTCGTGGCCAGGATCAATTCGAGCTCA 1342
Query 1372 TTGAAGGAGGTCAAATGTTACTAGGCTTCAATAACTTTCAAAGTGGTGCAACTGATGGGA 1431
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1343 TTGAAGGAGGTCAAATGTTACTAGGCTTCAATAACTTTCCAAGTGGTGCAACTGATGGGC 1402
Query 1432 GAAAGATCGGTAAGTTGTTTCTGTCAAGTAAAGAAATTGCAAAGGGAAGTAACGGAACTG 1491
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1403 GAAAGATCGGTAAGTTGTTTTTGTCAAGTAAAGAAATTGCAAAGGGAAGTAACGGAACTG 1462
Query 1492 TGGTGTTTGAGGGTATTTACGAAGGCCGGCCTGTAGCTGTAAAACGCCTTGTTCGATCTC 1551
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1463 TGGTGTTTGAGGGTATTTACGAAGGCCGGCCTGTAGCAGTAAAACGCATTGTTCGATCTC 1522
Query 1552 ATCATGAGGTTGCTTTCAAAGAGATTCAAAACCTCATTGCATCAGACCAACACACAAACA 1611
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1523 ATCATGAGGTTGCTTTCAAGGAGATTCAAAACCTCATTGCATCAGACCAACACTCAAACA 1582
Query 1612 TCATTCGGTGGTATGGTGTGGAGTATGATCAAGATTTTGTATACCTTTCTCTAGAGCGTT 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1583 TCATTCGGTGGTATGGTGTGGAGTATGATCAAGATTTTGTATACCTTTCTCTAGAACGTT 1642
Query 1672 GCACCTGCAGTTTAGATGATCTAATCAAATCCTATTTAGAGTTTTCTATGACAAAAGTAT 1731
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1643 GCACGTGCAGTTTAGATGATCTAATCAAATCCTATTTAGAGTTTTCTATGACAAAAATAT 1702
Query 1732 TGGAAAACAACGATTCTACTGAAGGAGTGGCTGCTTATAAGATCCAACTTGATTCTTTGG 1791
||| || ||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1703 TGGGAAGCAACGATTCTACTGAAGGAGTGGCTGCCTGTAAGATCCAACTTGATTCTTTGG 1762
Query 1792 AGGGAGTTATCAAAGGAAACAACTTTTGGAAAGTGGGGGGTCACCCGTCACCTCTCATGC 1851
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1763 AGGGAGTTATCAAAGGAAACAACTTTTGGAAAGTGGGGGGCCACCCGTCACCCCTCATGC 1822
Query 1852 TTAAACTAATGAGGGATATAGTTTGTGGAATCGTCCACTTACACGAATTGGGAATAGTTC 1911
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1823 TTAAACTAATGAGTGATATAGTTTGTGGGATCGTCCACTTACACGAATTGGGAATAGTTC 1882
Query 1912 ATCGGGACTTGAAGCCACAAAATGTGTTAATTAGTAAAGATATGACTTTGAGTGCAAAAC 1971
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1883 ATCGGGACTTGAAGCCACAAAATGTGTTAATTAGTAAAGAGATGACTTTGAGTGCAAAAC 1942
Query 1972 TGTCCGATATGGGCATTAGCAAGCGTATGTCCAGAGATATGTCATCATTGGGTCACCTTG 2031
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1943 TTTCCGATATGGGCATTAGCAAGCGTATGTCCAGAGATATGTCATCATTGGGTCACCTTG 2002
Query 2032 CCACAGGTTCTGGCAGTTCGGGCTGGCAAGCACCAGAGCAGCTTCTACAAGGTCGTCAAA 2091
| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 2003 CAACAGGTTCTGGTAGTTCGGGTTGGCAAGCACCAGAGCAGCTTCTACATGGTCGTCAAA 2062
Query 2092 CTCGTGCAGTCGATATGTTTAGTTTAGGTTGTGTCATCTTTTACACTATAACCGGTTGTA 2151
|||||||||| || |||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 2063 CTCGTGCAGTGGACATGTTTAGTTTAGGTTGTCTCATCTTTTACACGATAACCGGTTGTA 2122
Query 2152 AGCATCCCTTTGGTGATGATCTTGAACGAGATGTCAATATTGTGAAGAACAAAGTCGACC 2211
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2123 AGCATCCATTTGGAGATGATCTTGAACGAGATGTCAATATTGTGAAGAACAAAGTCGACC 2182
Query 2212 TATTTCTAGTAGAACACGTTCCAGAAGCTTCAGACCTCATATCCCGTTTGTTAAACCCAG 2271
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2183 TATTTCTAGTAGAACACGTTCCAGAAGCTTCAGACCTCATATCCCGTTTGTTGAACCCAG 2242
Query 2272 ACCCTGATTTACGTCCTAGCGCAA-CTGAAGTGCTACTCCATCCTATGTTTTGGAACTCA 2330
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 2243 ACCCTGATTTACGTCCTAGCGCAAGC-GAAGTGCTACTCCATCCTATGTTTTGGAACTCA 2301
Query 2331 GAGATGAGACTGTCTTTCCTTCGTGATGCTAGTGACCGAGTTGAGCTTGAAAATAGAGAA 2390
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2302 GAGATGAGACTATCTTTCCTTCGGGATGCTAGTGACCGAGTTGAGCTTGAAAATAGAGAA 2361
Query 2391 GCTGATTCTGAAATCTTGAAAGCAATGGAGAGTACAGCTCCAGTGGCTATAGGAGGGAAA 2450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2362 GCTGATTCTGAAATCTTGAAAGCAATGGAGAGTACAGCTCCAGTGGCTATAGGAGGGAAA 2421
Query 2451 TGGGATGAAAAGCTAGAACCTGTTTTCATCACAAACATCGGGCGCTACAGGCGTTACAAA 2510
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2422 TGGGATGAAAAGCTAGAACCTGTTTTCATCACAAACATTGGGCGCTACAGGCGTTACAAA 2481
Query 2511 TACGATAGCATCCGTGACTTGTTACGAGTCATCAGGAACAAACTGAATCATCATCGAGAA 2570
||||||||||| ||||||||| ||||||| ||||| ||||||||||||||| ||||||||
Sbjct 2482 TACGATAGCATTCGTGACTTGCTACGAGTTATCAGAAACAAACTGAATCATTATCGAGAA 2541
Query 2571 CTTCCTCCGGAAATTCAGGAACTTGTCGGAACAGTTCCAGAAGGATTCGACGAGTACTTT 2630
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2542 CTTCCTCCAGAAATTCAGGAACTTGTCGGAACAGTTCCAGAAGGATTCGACGAGTACTTT 2601
Query 2631 GCTGTACGGTTTCCGAAATTGTTGATTGAAGTCTATAGAGTCATCTCTCTGCATTGTAGG 2690
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 2602 GCTGTACGGTTTCCGAAGTTGTTGATTGAAGTCTATAGAGTCATCTCTCTGCACTGCAGG 2661
Query 2691 GAAGAAGAAGTATTCAGAAAGTACTTCAAATGCGACATCATCTAAAAGACTGTTTCGCTT 2750
|||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||
Sbjct 2662 GAAGAAGAAGTATTCAAAAAGTACTTCAAATGCAACATCATCTAAAAGACCGTTTCGCTT 2721
Query 2751 CCAGCACTTTATATGTTAGTTATTGTATGTTTGTCATTGTTATATAACATAACTTAACTG 2810
|||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 2722 CCAGCACTTTATTTGTTAGTTATTGTATGTTTGTCATTGTTATATTACATAAATTAACTG 2781
Query 2811 ATATCTAAATGTTTAACGTATAACTTAA-ACTGCAACATAT-GTAGT-AT-T--T-ATAT 2863
||||||||||||||||||||||||||| |||||||||||| ||| | || | | ||||
Sbjct 2782 CTATCTAAATGTTTAACGTATAACTTAAGACTGCAACATATAGTACTTATATAGTTATAT 2841
Query 2864 ATGTATATATCTCTTCAAGTAA---CTATGTTTCAAGTGACGTATTCTGCAAC 2913
||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 2842 ATGTATATATCTCTTCATGTAAAAACTATGTTTCAAGTGACGTATTCTGCAAC 2894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110042717805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5