BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17525.1
Length=2290
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343373 jgi|Araly1|343373|fgenesh1_pg.C_scaffold_3003136 2756 0.0
> Ahg343373 jgi|Araly1|343373|fgenesh1_pg.C_scaffold_3003136
Length=3171
Score = 2756 bits (1492), Expect = 0.0
Identities = 1682/1776 (95%), Gaps = 4/1776 (0%)
Strand=Plus/Plus
Query 384 TCTTCTTTGCTTTCTGTGCCCAGCGATGATCATATCGTCCGTCTCATTCTAGACCAGAAA 443
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 TCTTCTTTGCTTTCTGTACCCAGCGATGATCATATCGTCCGTCTCATTCTAGACCAGAAA 126
Query 444 TCAGCTTCTGGAGCTTTGGAAACTTTTCGATGGGCTTCGACTTTTCCTGGGTTTATCCAT 503
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 127 TCAGCTTCTGGAGCTTTGGAAACTTTTCGATGGGCTTCAACTTTTCCTGGGTTTATCCAT 186
Query 504 TCTCGTTCCACTTACCGTGCTCTGTTTCATAAACTTTGTGTTTTCCGACGTTTTGATACT 563
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 187 TCTCGTTCCACTTACCGTGCTCTGTTTTATAAACTTTGTGTTTTCCGTCGTTTTGATACT 246
Query 564 GTCTACCAACTGCTCGACGAAATGCCTGACTCAATTGGTTTGCCTCCGGATGATGCTATT 623
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 247 GTCTACCAACTGCTCGACGAAATGCCTGAGTCAACCGGTTTGCCTCCGGATGATGCTATC 306
Query 624 TTTGTAACTATCATTAGAGGGTTTGGGCGTGCTCGGTTGATCAAACGTGTGATTAGTGTT 683
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 307 TTTGTAACTATCATTAGAGGGTTTGGGCGTGCTCGATTGACCAAACGTGTGATTAGTGTT 366
Query 684 GTTGATCTAGTTTCGAAATTTGGGATCAAACCATCTCTGAAAGTTTTCAATTCGATTCT- 742
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 367 GTTGATCTGGTTTCGAAATTTGGGATCAAACCATCTTTGAAAGTTTTCAATTCGAT-CTT 425
Query 743 GGATGTTTTGGTTAAAGAAGACATTGACATAGCTAGAGAGTTTTTTACAAGGAAGATGAT 802
||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 426 GGATGTTTTGGTTAAGGAAGACATTGACATAGCTAGAGAGTTTTTCAGAAGGAAGATGAT 485
Query 803 GGCTAGTGGGATTCATGGTGATGTGTATACATATGGGATTTTGATGAAAGGGCTTTCTTT 862
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||
Sbjct 486 GGCTAGTGGGATTCATGGTGATGAGTACACATATGGGATTTTGATGAAAGGGCTTTGTTT 545
Query 863 AACGAATAGGATTGGTGATGGTTTTAAGCTTCTTCAGATCATGAAGACAAGTGGTGTGGC 922
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 546 AACGAATAGGATTGGTGATGGTTTTAAGCTCCTTCAGATCATGAAGACAAGCGGTGTGGC 605
Query 923 TCCAAACGCTGTGGTTTATAACACTTTGCTTCATGCTCTTTGTAAGAATGGGAAAGTCGG 982
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 606 TCCAAACACTGTGGTTTATAACACCTTGCTTCATGCTCTTTGTAAGAATGGGAAAGTTGG 665
Query 983 GAGAGCTAGGAGTTTAATGAGTGAAATGAAGGAACCAAATGATGTAACTTTCAACATTTT 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 666 GAGAGCTAGGAGTTTAATGAGTGAAATGAAGGAACCAAATGATGTAACTTTCAACATCTT 725
Query 1043 GATTTCTGCGTACTGCAATGAGCAGAAGTTGATTCAGTCAATGGTGTTGTTGGAGAAATG 1102
||| ||||| |||||||| |||||||||||||||||||| ||||||||| ||||||||||
Sbjct 726 GATATCTGCTTACTGCAACGAGCAGAAGTTGATTCAGTCGATGGTGTTGCTGGAGAAATG 785
Query 1103 TTTTAGTTTGGGTTTTGTTCCGGATGTTGTGACGGTAACTAAGGTGATGGAGGTTCTCTG 1162
||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 786 TTTTAGTTTGGGTCTTGTTCCGGATGTTGTGACGGTAACTAAGGTGATGGAAGTGCTCTG 845
Query 1163 CAATGAAGGCCGTGTGTCTGAGGCACTCGAGGTTTTGGAGAGAGTGGAAAGCAAAGGAGG 1222
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 846 CAATGAAGGCCGTGTGTCTGAGGCACTCGAGGTTTTAGAGAGAGTGGAAAGCAAAGGAGG 905
Query 1223 TAAAGTCGATGTTGTAGCTTGTAACACTTTGGTTAAAGGGTATTGTGCGCTAGGGAAAAT 1282
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 906 TAAAGTCGATGTTGTAGCTTGTAACACCTTGGTTAAAGGGTATTGTGCGGTAGGGAAAAT 965
Query 1283 GAGAGTTGCTCAACGGTTCTTTATAGAGATGGAGAGAAAAGGTTACTTGCCTAATGTGGA 1342
||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||
Sbjct 966 GAGAGTTGCTCAACGGTTCTTCAAAGAGATGGAGAGAAAAGGTTACTTGCCGAATGTGGA 1025
Query 1343 AACATACAACTTGTTGATAGCTGGGTATTGTGATGTTGGAATGTTGGATTCAGCTCTTGA 1402
|||||| | |||||||| ||||| | ||| |||||||||||||||||||||||||| ||
Sbjct 1026 AACATATAGTTTGTTGATTGCTGGATTTTGCGATGTTGGAATGTTGGATTCAGCTCTGGA 1085
Query 1403 CACTTTCAATGATATGAAAACAGATGCGATTAGATGGAACTTTGCTACATTTAACACGTT 1462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 CACTTTCAATGATATGAAAACAGATGCGATTAGATGGAACTTTGCTACATTTAACACGTT 1145
Query 1463 GATCAGAGGGCTTTCAATAGGGGGGAGGACAGACGATGGTTTAAAGATATTAGAAATGAT 1522
|||||||||||||||| || | |||||||||||||||||| |||||||||||||| ||||
Sbjct 1146 GATCAGAGGGCTTTCAGTAAGAGGGAGGACAGACGATGGTATAAAGATATTAGAACTGAT 1205
Query 1523 GCAGGACAGCGATACCGTTCATGGGGCCAGAATCGACCCTTACAATTGTGTTATTTATGG 1582
|||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 1206 GCAGGACAGCGAAACCGTTCATGGGGCCAGAATCGATCCGTACAACAGTGTTATTTATGG 1265
Query 1583 CTTTTACAAGGAAAACCGTTGGGAGGACGCCCTGGAATTCCTCTTAAAGATGGAGAAACT 1642
|||||||||||||||||| ||||||||||| || |||||||| |||||||||||||||||
Sbjct 1266 CTTTTACAAGGAAAACCGGTGGGAGGACGCTCTCGAATTCCTGTTAAAGATGGAGAAACT 1325
Query 1643 TTTTCCGAGGGCAGTTGACAGGAGCTTCAAGTTGATAAGTTTATGCGAGAAAGGCGGTAT 1702
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1326 TTTTCCAAGGGCAGTTGACAGGAGCTTCAAGTTGATTAGTTTATGCGAGAAAGGCGGTAT 1385
Query 1703 GGATGATTTAAAGACGGCCTATGATCAGATGATTGGAGAAGGAGGAGTTCCTAGCATTAT 1762
||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1386 GGATGATGTAAAGACGGCCTATGATCAGATGACTGGAGAAGGAGGAGTTCCTAGTGTTAT 1445
Query 1763 AGTATCCCATTGCTTGATTCATAGATACAGCCAACATGGCAAA-ATAGAAGAATCACTTG 1821
||| |||||||||||||||||||||||||||||| | || | | || |||||| ||||||
Sbjct 1446 AGTTTCCCATTGCTTGATTCATAGATACAGCCAAGAAGG-ATACATGGAAGAAACACTTG 1504
Query 1822 AGCTTATTAACGACATGGTGACCAGAGGCTATTTGCCTCGATCATCAACATTCAATGCTG 1881
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1505 AGCTTATTAACGACATGGTCACCAGAGGCTATTTGCCTCGATCATCAACATTCAATGCTG 1564
Query 1882 TGATTATCGGGTTCTGTAAGCAAGACAAAGTCATGAATGGTATTAAGTTCGTGGAAGACA 1941
|||||||||||||||||||| |||| ||||||||||||||||| ||||| ||||||||||
Sbjct 1565 TGATTATCGGGTTCTGTAAGGAAGATAAAGTCATGAATGGTATCAAGTTTGTGGAAGACA 1624
Query 1942 TGGCTGAAAGAGGTTGCGTTCCTGATACAGAGAGCTACAATCCATTGCTCGAAGAGTTGT 2001
||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| ||||
Sbjct 1625 TGGCTGAGAGAGGTTGCGTTCCTGATAGAGAGAGCTACAATCCGTTGCTCGAAGAATTGT 1684
Query 2002 GCGTGAAGGGTGATATTCAGAAGGCTTGGTTGCTTTTCTCACGAATGGTGGAGAAGAGTA 2061
|||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1685 GCGTGAAGGGTGATTTTCAGAAGGCTTGGTTGCTTTTGTCACTAATGGTGGAGAAGAGTA 1744
Query 2062 TTGTCCCTGATCCTTCTATGTGGAGTTCACTGATGTTTTGTCTCAGCCAGAAAACCGCAA 2121
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1745 TTGTACCTGATTCTTCTATGTGGAGTTCACTGATGTTTTGTCTCAGCCAGAAAACCGCAA 1804
Query 2122 TCCACGTAAACTCCTCATTGCAGGACATAATCCAAA 2157
||||| | ||| |||||||||||||||||||| |||
Sbjct 1805 TCCACTTGAACACCTCATTGCAGGACATAATCGAAA 1840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86236314680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5